Wall clock time and date at job start Sat Apr 11 2020 04:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48501 * 109.47356 * 270.00220 * 3 2 1 5 5 H 1.48504 * 109.47313 * 29.99917 * 3 2 1 6 6 H 1.48499 * 109.47570 * 150.00031 * 3 2 1 7 7 C 1.37875 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99578 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.48725 * 110.99909 * 307.15277 * 11 10 9 13 13 C 1.55187 * 103.42020 * 201.24730 * 12 11 10 14 14 C 1.54804 * 102.85252 * 36.84376 * 13 12 11 15 15 C 1.47077 * 110.99999 * 190.00209 * 11 10 9 16 16 C 1.53867 * 110.70209 * 266.25970 * 15 11 10 17 17 C 1.54648 * 101.58126 * 96.21165 * 16 15 11 18 18 N 1.46854 * 105.50635 * 24.75859 * 17 16 15 19 19 C 1.46494 * 124.36727 * 163.10533 * 18 17 16 20 20 C 1.53003 * 109.47224 * 90.02978 * 19 18 17 21 21 H 1.08996 * 110.21921 * 63.06371 * 20 19 18 22 22 C 1.54482 * 110.24934 * 185.00056 * 20 19 18 23 23 C 1.54628 * 101.76707 * 93.57710 * 22 20 19 24 24 C 1.51287 * 104.19493 * 24.80208 * 23 22 20 25 25 O 1.21273 * 124.94263 * 163.71282 * 24 23 22 26 26 N 1.34426 * 110.11120 * 343.74452 * 24 23 22 27 27 C 1.34667 * 111.25848 * 343.12745 * 18 17 16 28 28 O 1.21278 * 125.07384 * 180.87208 * 27 18 17 29 29 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47080 * 60.00426 * 9 7 2 31 31 H 1.08995 * 109.47746 * 300.00292 * 9 7 2 32 32 H 1.08998 * 109.47122 * 60.00413 * 10 9 7 33 33 H 1.09001 * 109.46879 * 300.00118 * 10 9 7 34 34 H 1.09000 * 110.64787 * 319.65719 * 12 11 10 35 35 H 1.09003 * 110.64339 * 82.72337 * 12 11 10 36 36 H 1.09005 * 110.70773 * 278.53776 * 13 12 11 37 37 H 1.08995 * 110.82293 * 155.20342 * 13 12 11 38 38 H 1.09002 * 110.37261 * 219.32603 * 14 13 12 39 39 H 1.08999 * 110.36953 * 97.10209 * 14 13 12 40 40 H 1.09002 * 111.00584 * 214.28738 * 16 15 11 41 41 H 1.08993 * 111.00195 * 338.10493 * 16 15 11 42 42 H 1.09000 * 110.24240 * 143.76747 * 17 16 15 43 43 H 1.09001 * 110.24319 * 265.74591 * 17 16 15 44 44 H 1.08999 * 109.47300 * 210.02600 * 19 18 17 45 45 H 1.08999 * 109.47355 * 330.02665 * 19 18 17 46 46 H 1.08998 * 110.96779 * 211.70168 * 22 20 19 47 47 H 1.09007 * 110.96537 * 335.46365 * 22 20 19 48 48 H 1.09003 * 110.48463 * 143.47399 * 23 22 20 49 49 H 1.09004 * 110.48868 * 266.12170 * 23 22 20 50 50 H 0.97008 * 124.34131 * 179.59767 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5109 -4.9342 0.0020 12 6 0.5187 -4.9763 1.1091 13 6 0.2630 -6.4943 1.3060 14 6 1.6612 -7.1132 1.0647 15 6 2.4186 -6.0667 0.2402 16 6 2.8971 -6.6699 -1.0919 17 6 4.2582 -5.9608 -1.2826 18 7 4.6969 -5.5837 0.0672 19 6 6.0701 -5.2117 0.4167 20 6 6.2471 -3.7010 0.2510 21 1 5.5946 -3.1672 0.9419 22 6 7.7206 -3.3056 0.4936 23 6 8.2942 -3.3300 -0.9421 24 6 7.0897 -3.0952 -1.8269 25 8 7.1381 -2.7654 -2.9929 26 7 5.9581 -3.3046 -1.1322 27 6 3.6741 -5.6245 0.9422 28 8 3.7530 -5.3459 2.1200 29 1 -0.4849 0.8401 0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 2.8727 -3.6039 0.8909 33 1 2.8714 -3.6046 -0.8891 34 1 0.9355 -4.5376 2.0156 35 1 -0.4002 -4.4656 0.8211 36 1 -0.4537 -6.8628 0.5720 37 1 -0.0806 -6.7010 2.3195 38 1 1.5725 -8.0449 0.5059 39 1 2.1678 -7.2876 2.0139 40 1 3.0270 -7.7489 -1.0081 41 1 2.2105 -6.4228 -1.9016 42 1 4.9780 -6.6420 -1.7365 43 1 4.1370 -5.0720 -1.9018 44 1 6.2695 -5.4895 1.4516 45 1 6.7662 -5.7334 -0.2401 46 1 7.7906 -2.3070 0.9248 47 1 8.2219 -4.0381 1.1264 48 1 9.0258 -2.5328 -1.0743 49 1 8.7424 -4.3000 -1.1575 50 1 5.0651 -3.2063 -1.4983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:21 Heat of formation + Delta-G solvation = -86.305695 kcal Electronic energy + Delta-G solvation = -31635.562295 eV Core-core repulsion = 27661.199160 eV Total energy + Delta-G solvation = -3974.363135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56764 -41.27637 -38.88764 -37.92770 -37.09413 -35.76479 -33.85753 -33.02634 -32.23701 -30.37917 -29.71547 -28.80692 -26.44440 -26.16359 -24.65920 -23.28387 -22.56141 -21.85705 -21.47857 -21.36847 -19.81521 -18.82244 -18.46909 -17.83905 -17.42907 -16.89471 -16.77089 -16.45965 -16.28673 -16.10129 -15.88893 -15.33320 -14.99127 -14.86493 -14.59791 -14.48833 -14.35944 -14.15269 -13.79444 -13.65030 -13.56700 -13.43500 -13.28469 -13.01033 -12.90823 -12.76601 -12.57743 -12.38144 -12.28821 -12.24568 -12.04515 -11.88020 -11.81757 -11.55570 -11.36164 -11.33191 -11.03493 -10.96260 -10.62784 -10.52936 -9.58318 -9.40756 -8.28265 -6.38885 1.30823 1.32105 1.40888 1.42200 1.57417 1.94002 2.31228 2.35656 2.94133 3.05337 3.33404 3.39981 3.44636 3.56674 3.67102 3.78920 3.91367 4.04340 4.08896 4.14844 4.21107 4.27325 4.34568 4.38093 4.45967 4.53395 4.58150 4.66033 4.72882 4.75702 4.86067 4.88681 4.91479 4.96512 5.02185 5.03551 5.10629 5.13818 5.16213 5.25761 5.34109 5.51450 5.56599 5.66220 5.73262 5.85619 5.99547 6.03314 6.05997 6.18141 6.75511 7.09233 7.18073 7.29663 8.83750 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007240 B = 0.006393 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.667268 B = 4378.832182 C = 7283.870292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.038 3.962 10 C 0.075 3.925 11 N -0.484 5.484 12 C 0.033 3.967 13 C -0.110 4.110 14 C -0.104 4.104 15 C 0.047 3.953 16 C -0.107 4.107 17 C 0.100 3.900 18 N -0.611 5.611 19 C 0.117 3.883 20 C 0.106 3.894 21 H 0.059 0.941 22 C -0.112 4.112 23 C -0.141 4.141 24 C 0.507 3.493 25 O -0.591 6.591 26 N -0.721 5.721 27 C 0.505 3.495 28 O -0.569 6.569 29 H 0.265 0.735 30 H -0.002 1.002 31 H -0.008 1.008 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.117 0.883 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.111 0.889 49 H 0.135 0.865 50 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.102 -18.907 0.736 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.001 3.999 10 C -0.053 4.053 11 N -0.209 5.209 12 C -0.095 4.095 13 C -0.148 4.148 14 C -0.143 4.143 15 C -0.046 4.046 16 C -0.145 4.145 17 C -0.022 4.022 18 N -0.344 5.344 19 C -0.005 4.005 20 C 0.000 4.000 21 H 0.077 0.923 22 C -0.150 4.150 23 C -0.181 4.181 24 C 0.296 3.704 25 O -0.472 6.472 26 N -0.374 5.374 27 C 0.292 3.708 28 O -0.447 6.447 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.010 0.990 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.148 0.852 48 H 0.130 0.870 49 H 0.153 0.847 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 13.984 -18.514 0.308 23.204 hybrid contribution -0.292 2.029 0.722 2.174 sum 13.693 -16.484 1.030 21.454 Atomic orbital electron populations 1.70081 1.07531 1.27778 1.51150 1.25835 0.95710 1.02870 0.94622 0.85571 0.78666 0.79067 0.78517 1.19816 1.20217 1.19274 1.21439 0.92952 0.92245 1.51138 0.93073 1.18908 0.94042 0.91858 0.95127 1.22136 0.95893 0.89104 0.98183 1.65043 1.12031 1.01721 1.42064 1.23285 0.95922 0.98634 0.91672 1.22554 0.97403 0.91844 1.02992 1.22333 0.94760 0.97714 0.99445 1.22412 0.90488 0.94106 0.97572 1.22719 0.95158 1.01097 0.95485 1.22362 0.97567 0.99753 0.82551 1.48418 1.08937 1.66708 1.10291 1.22039 0.81657 0.93239 1.03595 1.22261 0.99310 0.96217 0.82251 0.92315 1.22644 0.90888 1.04779 0.96713 1.22384 0.95253 1.07005 0.93453 1.21776 0.87574 0.74424 0.86665 1.90722 1.87659 1.50192 1.18657 1.46579 1.08801 1.68633 1.13349 1.21514 0.87389 0.75998 0.85857 1.90674 1.85361 1.51434 1.17244 0.92630 0.98390 0.98964 0.96923 0.91960 0.96393 0.91199 0.88786 0.89868 0.86745 0.91840 0.86281 0.88029 0.87058 0.92827 0.88328 0.86447 0.89767 0.85181 0.87039 0.84695 0.76301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.04 2.08 4.65 29.85 0.14 2.22 16 10 C 0.07 3.26 4.16 86.30 0.36 3.62 16 11 N -0.48 -17.36 5.03 -839.36 -4.22 -21.57 16 12 C 0.03 1.19 5.11 86.70 0.44 1.63 16 13 C -0.11 -2.76 7.09 31.96 0.23 -2.53 16 14 C -0.10 -2.38 6.18 31.29 0.19 -2.19 16 15 C 0.05 1.30 0.79 3.06 0.00 1.31 16 16 C -0.11 -2.02 6.33 31.45 0.20 -1.82 16 17 C 0.10 1.92 6.51 86.87 0.57 2.48 16 18 N -0.61 -14.14 2.80 -818.13 -2.29 -16.44 16 19 C 0.12 2.08 5.54 86.38 0.48 2.56 16 20 C 0.11 2.28 3.80 45.45 0.17 2.45 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 C -0.11 -1.49 6.70 31.65 0.21 -1.27 16 23 C -0.14 -2.04 6.86 30.59 0.21 -1.83 16 24 C 0.51 13.42 8.43 87.90 0.74 14.17 16 25 O -0.59 -21.53 18.03 -3.01 -0.05 -21.58 16 26 N -0.72 -19.03 5.28 -439.43 -2.32 -21.35 16 27 C 0.51 15.59 4.46 87.61 0.39 15.98 16 28 O -0.57 -22.20 16.58 -3.02 -0.05 -22.25 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H -0.01 -0.47 6.81 -2.39 -0.02 -0.49 16 32 H 0.01 0.61 5.91 -2.39 -0.01 0.59 16 33 H 0.06 2.63 6.74 -2.39 -0.02 2.61 16 34 H 0.02 0.75 7.98 -2.39 -0.02 0.73 16 35 H 0.07 2.75 7.72 -2.39 -0.02 2.73 16 36 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.11 1.75 7.40 -2.39 -0.02 1.73 16 39 H 0.06 1.59 7.44 -2.39 -0.02 1.58 16 40 H 0.12 1.42 7.57 -2.39 -0.02 1.40 16 41 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.25 6.34 -2.39 -0.02 1.24 16 44 H 0.10 1.71 7.95 -2.39 -0.02 1.69 16 45 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.13 0.81 7.89 -2.38 -0.02 0.79 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 49 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.40 12.54 7.64 -92.70 -0.71 11.83 16 Total: -1.00 -82.88 387.81 -1.37 -84.24 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.23 Total: 21.75 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.03 Total: 6.25 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -8.55 Total: -116.51 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.10 Total: -43.83 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -82.88 -1.37 -84.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.064 kcal (2) G-P(sol) polarization free energy of solvation -82.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds