Wall clock time and date at job start Sat Apr 11 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47585 * 180.02562 * 10 9 7 12 12 C 1.47710 * 111.00025 * 69.86493 * 11 10 9 13 13 C 1.54412 * 107.19894 * 122.14656 * 12 11 10 14 14 C 1.55329 * 103.13070 * 22.18533 * 13 12 11 15 15 C 1.46720 * 111.00235 * 190.34260 * 11 10 9 16 16 C 1.53610 * 111.40922 * 94.55774 * 15 11 10 17 17 C 1.54704 * 101.51754 * 214.38979 * 16 15 11 18 18 N 1.46880 * 105.51663 * 24.52721 * 17 16 15 19 19 C 1.46502 * 124.37004 * 163.15978 * 18 17 16 20 20 C 1.52996 * 109.47323 * 90.02754 * 19 18 17 21 21 H 1.08997 * 110.21910 * 63.06489 * 20 19 18 22 22 C 1.54476 * 110.24631 * 184.99766 * 20 19 18 23 23 C 1.54626 * 101.76504 * 93.58240 * 22 20 19 24 24 C 1.51279 * 104.19675 * 24.79679 * 23 22 20 25 25 O 1.21285 * 124.93845 * 163.71003 * 24 23 22 26 26 N 1.34411 * 110.11503 * 343.75140 * 24 23 22 27 27 C 1.34747 * 111.25263 * 343.17705 * 18 17 16 28 28 O 1.21281 * 125.12878 * 180.98275 * 27 18 17 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 31 31 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 32 32 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 33 33 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 34 34 H 1.09001 * 109.89450 * 241.53617 * 12 11 10 35 35 H 1.09000 * 109.89770 * 2.75284 * 12 11 10 36 36 H 1.09002 * 110.68327 * 140.59489 * 13 12 11 37 37 H 1.08994 * 110.68415 * 263.60767 * 13 12 11 38 38 H 1.09002 * 111.00891 * 83.47738 * 14 13 12 39 39 H 1.08993 * 111.01305 * 207.30797 * 14 13 12 40 40 H 1.09004 * 111.01625 * 332.44625 * 16 15 11 41 41 H 1.08998 * 111.01961 * 96.32479 * 16 15 11 42 42 H 1.08997 * 110.24021 * 143.54085 * 17 16 15 43 43 H 1.08999 * 110.23679 * 265.52091 * 17 16 15 44 44 H 1.09008 * 109.46903 * 210.02166 * 19 18 17 45 45 H 1.09002 * 109.47453 * 330.01946 * 19 18 17 46 46 H 1.09001 * 110.97316 * 211.70116 * 22 20 19 47 47 H 1.09007 * 110.97202 * 335.42806 * 22 20 19 48 48 H 1.09000 * 110.49009 * 143.48092 * 23 22 20 49 49 H 1.09001 * 110.48873 * 265.98611 * 23 22 20 50 50 H 0.96998 * 124.34774 * 179.59526 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4905 -2.6367 -0.0002 12 6 6.0189 -2.1637 1.2956 13 6 6.9147 -3.2871 1.8609 14 6 7.2982 -4.1029 0.5959 15 6 6.0165 -3.9839 -0.2474 16 6 6.3247 -4.2010 -1.7365 17 6 5.9733 -5.6976 -1.9097 18 7 5.0079 -6.0003 -0.8449 19 6 4.1392 -7.1798 -0.8269 20 6 4.8522 -8.3274 -0.1088 21 1 5.0388 -8.0624 0.9319 22 6 4.0047 -9.6165 -0.1885 23 6 4.5910 -10.3020 -1.4444 24 6 5.9943 -9.7468 -1.5492 25 8 6.8825 -10.2261 -2.2219 26 7 6.1138 -8.6456 -0.7878 27 6 5.0242 -5.0527 0.1130 28 8 4.3406 -5.0612 1.1147 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8905 32 1 3.6579 -3.1514 0.8880 33 1 3.6585 -3.1495 -0.8920 34 1 6.6080 -1.2586 1.1478 35 1 5.1955 -1.9652 1.9817 36 1 7.8035 -2.8695 2.3339 37 1 6.3588 -3.9046 2.5664 38 1 8.1472 -3.6516 0.0825 39 1 7.5050 -5.1426 0.8492 40 1 5.6888 -3.5751 -2.3626 41 1 7.3785 -4.0198 -1.9481 42 1 5.5223 -5.8683 -2.8872 43 1 6.8670 -6.3106 -1.7937 44 1 3.2141 -6.9417 -0.3019 45 1 3.9100 -7.4780 -1.8500 46 1 4.1507 -10.2347 0.6973 47 1 2.9495 -9.3816 -0.3283 48 1 4.6175 -11.3835 -1.3115 49 1 4.0085 -10.0415 -2.3282 50 1 6.9291 -8.1277 -0.6987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:25 Heat of formation + Delta-G solvation = -55.440383 kcal Electronic energy + Delta-G solvation = -30788.288206 eV Core-core repulsion = 26815.263491 eV Total energy + Delta-G solvation = -3973.024715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50023 -40.55573 -37.84212 -36.89792 -36.25519 -33.74421 -32.25351 -31.91446 -31.70506 -29.15029 -28.80939 -27.83793 -25.46786 -24.57917 -23.44426 -21.89062 -21.69564 -21.02547 -20.70606 -19.81864 -18.86915 -17.80337 -17.11163 -16.78501 -16.17955 -15.94994 -15.89142 -15.36690 -15.19591 -14.56571 -14.23547 -14.10807 -14.04723 -13.92422 -13.66240 -13.48805 -13.13634 -13.03951 -13.01549 -12.66285 -12.51376 -12.46067 -12.11545 -11.93140 -11.75103 -11.61736 -11.38470 -11.30209 -11.16516 -11.02351 -10.72400 -10.63824 -10.20251 -9.96798 -9.90832 -9.82882 -9.73906 -9.67881 -9.17993 -8.71507 -8.50518 -7.83904 -6.01432 -3.99099 2.26984 2.55066 2.77535 3.01178 3.33677 3.40674 3.46777 3.98912 4.06569 4.08764 4.32219 4.35958 4.41457 4.48638 4.59219 4.67546 4.74823 4.80674 4.92558 5.05138 5.10211 5.14227 5.21732 5.31706 5.33154 5.35727 5.41662 5.47632 5.53246 5.54556 5.68172 5.73496 5.80512 5.94383 6.03052 6.08994 6.18979 6.32439 6.38303 6.43429 6.50598 6.69117 6.81543 7.00002 7.10340 7.23007 7.49125 7.61855 7.86018 7.91436 8.18997 8.57131 9.03272 9.61049 11.12074 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.003148 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.811143 B = 8893.508199 C = 9762.879199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.289 1.289 7 C -0.518 4.518 8 H 0.069 0.931 9 C -0.003 4.003 10 C 0.053 3.947 11 N -0.500 5.500 12 C 0.042 3.958 13 C -0.140 4.140 14 C -0.104 4.104 15 C 0.066 3.934 16 C -0.114 4.114 17 C 0.106 3.894 18 N -0.621 5.621 19 C 0.115 3.885 20 C 0.113 3.887 21 H 0.093 0.907 22 C -0.125 4.125 23 C -0.158 4.158 24 C 0.519 3.481 25 O -0.539 6.539 26 N -0.721 5.721 27 C 0.511 3.489 28 O -0.510 6.510 29 H 0.262 0.738 30 H 0.021 0.979 31 H 0.011 0.989 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.543 -17.756 -1.453 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.187 1.187 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.074 4.074 11 N -0.223 5.223 12 C -0.086 4.086 13 C -0.179 4.179 14 C -0.142 4.142 15 C -0.028 4.028 16 C -0.153 4.153 17 C -0.018 4.018 18 N -0.357 5.357 19 C -0.009 4.009 20 C 0.006 3.994 21 H 0.111 0.889 22 C -0.164 4.164 23 C -0.198 4.198 24 C 0.305 3.695 25 O -0.416 6.416 26 N -0.377 5.377 27 C 0.297 3.703 28 O -0.383 6.383 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.115 0.885 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 14.465 -17.662 -1.673 22.891 hybrid contribution 0.233 0.656 0.615 0.929 sum 14.698 -17.006 -1.058 22.503 Atomic orbital electron populations 1.69920 1.06304 1.26825 1.51326 1.24992 0.94708 0.99117 0.94559 0.86769 0.80509 0.83507 0.78500 1.20370 1.18741 1.21473 1.21065 0.89404 0.94435 1.50735 0.91259 1.19522 0.96453 0.91473 0.96620 1.22575 0.83187 1.00773 1.00833 1.63852 1.11103 1.16390 1.30958 1.22903 0.98241 0.97448 0.90011 1.22863 0.99925 0.97730 0.97355 1.22490 0.95510 1.00358 0.95851 1.22042 0.94552 0.89427 0.96738 1.22557 1.03434 0.94190 0.95081 1.22179 0.91930 0.96536 0.91114 1.48327 1.40070 1.23145 1.24120 1.21846 0.93427 0.83731 1.01845 1.22195 0.84313 0.95249 0.97665 0.88851 1.22605 1.00588 0.94882 0.98315 1.22361 0.94466 1.02655 1.00294 1.20939 0.90228 0.80282 0.78028 1.90766 1.45957 1.63033 1.41809 1.46330 1.13852 1.29093 1.48397 1.21295 0.83538 0.82965 0.82477 1.90720 1.44241 1.76530 1.26846 0.92789 0.96020 0.97099 0.92477 0.92420 0.90619 0.91583 0.90863 0.91083 0.89592 0.91323 0.88811 0.89013 0.90468 0.91691 0.88380 0.89945 0.89458 0.88502 0.87946 0.87617 0.75302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 -0.07 4.07 -27.88 -0.11 -0.19 16 10 C 0.05 1.12 3.50 -3.82 -0.01 1.11 16 11 N -0.50 -8.52 4.85 -218.21 -1.06 -9.58 16 12 C 0.04 0.66 6.24 -2.64 -0.02 0.64 16 13 C -0.14 -1.75 6.85 -24.76 -0.17 -1.92 16 14 C -0.10 -1.13 5.96 -25.03 -0.15 -1.28 16 15 C 0.07 0.89 0.68 -132.30 -0.09 0.80 16 16 C -0.11 -1.21 6.46 -25.52 -0.16 -1.38 16 17 C 0.11 0.94 7.03 -2.94 -0.02 0.92 16 18 N -0.62 -6.84 2.82 -172.53 -0.49 -7.32 16 19 C 0.12 1.02 5.54 -4.04 -0.02 1.00 16 20 C 0.11 0.81 3.80 -67.01 -0.25 0.56 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.13 -0.64 6.70 -25.10 -0.17 -0.81 16 23 C -0.16 -0.94 6.86 -26.74 -0.18 -1.13 16 24 C 0.52 4.92 8.43 -10.87 -0.09 4.83 16 25 O -0.54 -7.45 18.03 5.55 0.10 -7.35 16 26 N -0.72 -5.65 5.28 -52.77 -0.28 -5.93 16 27 C 0.51 7.49 5.36 -11.23 -0.06 7.43 16 28 O -0.51 -9.40 15.31 5.56 0.09 -9.31 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 31 H 0.01 0.27 6.55 -51.93 -0.34 -0.07 16 32 H 0.06 1.34 5.81 -51.93 -0.30 1.03 16 33 H 0.06 1.26 7.71 -51.93 -0.40 0.86 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.19 6.88 -51.93 -0.36 0.83 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.80 7.78 -51.93 -0.40 0.39 16 39 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 40 H 0.09 1.16 8.12 -51.93 -0.42 0.73 16 41 H 0.09 0.76 7.63 -51.93 -0.40 0.37 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.47 7.03 -51.93 -0.36 0.11 16 44 H 0.10 1.00 7.95 -51.92 -0.41 0.59 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.38 7.89 -51.93 -0.41 -0.03 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.41 3.12 7.98 -40.82 -0.33 2.79 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -36.43 387.19 -9.96 -46.39 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.31 Total: 0.39 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.95 Total: -3.03 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.05 Total: -50.41 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.19 Total: -16.67 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.43 -9.96 -46.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.045 kcal (2) G-P(sol) polarization free energy of solvation -36.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds