Wall clock time and date at job start Sat Apr 11 2020 04:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47585 * 180.02562 * 10 9 7 12 12 C 1.47710 * 111.00025 * 69.86493 * 11 10 9 13 13 C 1.54412 * 107.19894 * 122.14656 * 12 11 10 14 14 C 1.55329 * 103.13070 * 22.18533 * 13 12 11 15 15 C 1.46720 * 111.00235 * 190.34260 * 11 10 9 16 16 C 1.53610 * 111.40922 * 94.55774 * 15 11 10 17 17 C 1.54704 * 101.51754 * 214.38979 * 16 15 11 18 18 N 1.46880 * 105.51663 * 24.52721 * 17 16 15 19 19 C 1.46502 * 124.37004 * 163.15978 * 18 17 16 20 20 C 1.52996 * 109.47323 * 90.02754 * 19 18 17 21 21 H 1.08997 * 110.21910 * 63.06489 * 20 19 18 22 22 C 1.54476 * 110.24631 * 184.99766 * 20 19 18 23 23 C 1.54626 * 101.76504 * 93.58240 * 22 20 19 24 24 C 1.51279 * 104.19675 * 24.79679 * 23 22 20 25 25 O 1.21285 * 124.93845 * 163.71003 * 24 23 22 26 26 N 1.34411 * 110.11503 * 343.75140 * 24 23 22 27 27 C 1.34747 * 111.25263 * 343.17705 * 18 17 16 28 28 O 1.21281 * 125.12878 * 180.98275 * 27 18 17 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 31 31 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 32 32 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 33 33 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 34 34 H 1.09001 * 109.89450 * 241.53617 * 12 11 10 35 35 H 1.09000 * 109.89770 * 2.75284 * 12 11 10 36 36 H 1.09002 * 110.68327 * 140.59489 * 13 12 11 37 37 H 1.08994 * 110.68415 * 263.60767 * 13 12 11 38 38 H 1.09002 * 111.00891 * 83.47738 * 14 13 12 39 39 H 1.08993 * 111.01305 * 207.30797 * 14 13 12 40 40 H 1.09004 * 111.01625 * 332.44625 * 16 15 11 41 41 H 1.08998 * 111.01961 * 96.32479 * 16 15 11 42 42 H 1.08997 * 110.24021 * 143.54085 * 17 16 15 43 43 H 1.08999 * 110.23679 * 265.52091 * 17 16 15 44 44 H 1.09008 * 109.46903 * 210.02166 * 19 18 17 45 45 H 1.09002 * 109.47453 * 330.01946 * 19 18 17 46 46 H 1.09001 * 110.97316 * 211.70116 * 22 20 19 47 47 H 1.09007 * 110.97202 * 335.42806 * 22 20 19 48 48 H 1.09000 * 110.49009 * 143.48092 * 23 22 20 49 49 H 1.09001 * 110.48873 * 265.98611 * 23 22 20 50 50 H 0.96998 * 124.34774 * 179.59526 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4905 -2.6367 -0.0002 12 6 6.0189 -2.1637 1.2956 13 6 6.9147 -3.2871 1.8609 14 6 7.2982 -4.1029 0.5959 15 6 6.0165 -3.9839 -0.2474 16 6 6.3247 -4.2010 -1.7365 17 6 5.9733 -5.6976 -1.9097 18 7 5.0079 -6.0003 -0.8449 19 6 4.1392 -7.1798 -0.8269 20 6 4.8522 -8.3274 -0.1088 21 1 5.0388 -8.0624 0.9319 22 6 4.0047 -9.6165 -0.1885 23 6 4.5910 -10.3020 -1.4444 24 6 5.9943 -9.7468 -1.5492 25 8 6.8825 -10.2261 -2.2219 26 7 6.1138 -8.6456 -0.7878 27 6 5.0242 -5.0527 0.1130 28 8 4.3406 -5.0612 1.1147 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8905 32 1 3.6579 -3.1514 0.8880 33 1 3.6585 -3.1495 -0.8920 34 1 6.6080 -1.2586 1.1478 35 1 5.1955 -1.9652 1.9817 36 1 7.8035 -2.8695 2.3339 37 1 6.3588 -3.9046 2.5664 38 1 8.1472 -3.6516 0.0825 39 1 7.5050 -5.1426 0.8492 40 1 5.6888 -3.5751 -2.3626 41 1 7.3785 -4.0198 -1.9481 42 1 5.5223 -5.8683 -2.8872 43 1 6.8670 -6.3106 -1.7937 44 1 3.2141 -6.9417 -0.3019 45 1 3.9100 -7.4780 -1.8500 46 1 4.1507 -10.2347 0.6973 47 1 2.9495 -9.3816 -0.3283 48 1 4.6175 -11.3835 -1.3115 49 1 4.0085 -10.0415 -2.3282 50 1 6.9291 -8.1277 -0.6987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:24 Heat of formation + Delta-G solvation = -83.404163 kcal Electronic energy + Delta-G solvation = -30789.500807 eV Core-core repulsion = 26815.263491 eV Total energy + Delta-G solvation = -3974.237315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51889 -41.31056 -38.92409 -37.89794 -37.24198 -35.62634 -33.85938 -33.07058 -32.26774 -30.80511 -29.70705 -28.79848 -26.39545 -26.16693 -24.53050 -23.18130 -22.51026 -21.89611 -21.47741 -21.29568 -20.01788 -19.03678 -18.52845 -17.87823 -17.24072 -17.02798 -16.73765 -16.49557 -16.20098 -16.05762 -15.65207 -15.35707 -14.93622 -14.82018 -14.79695 -14.57226 -14.40765 -14.22366 -14.06879 -13.74820 -13.55676 -13.39445 -13.24706 -13.08416 -12.87584 -12.81391 -12.61070 -12.30095 -12.19078 -12.08889 -11.91660 -11.82990 -11.72301 -11.62074 -11.55261 -11.42431 -10.98578 -10.95976 -10.79823 -10.53508 -9.60110 -9.20638 -8.33051 -6.38068 1.33810 1.36012 1.42478 1.49746 1.57198 1.92436 2.34228 2.34936 2.87198 3.01973 3.36251 3.41015 3.46840 3.56275 3.67240 3.76276 3.84586 4.03066 4.06053 4.12314 4.15356 4.23850 4.33235 4.41366 4.52054 4.54685 4.59258 4.63122 4.73401 4.80103 4.85027 4.89087 4.91314 4.92742 4.99222 5.04039 5.08992 5.10093 5.16615 5.20575 5.28884 5.42857 5.54728 5.58082 5.76972 5.97781 6.00449 6.01594 6.08169 6.25268 6.68269 7.11872 7.21260 7.26371 8.84092 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.003148 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.811143 B = 8893.508199 C = 9762.879199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.245 1.245 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.022 0.978 9 C 0.007 3.993 10 C 0.078 3.922 11 N -0.501 5.501 12 C 0.034 3.966 13 C -0.134 4.134 14 C -0.093 4.093 15 C 0.055 3.945 16 C -0.109 4.109 17 C 0.106 3.894 18 N -0.616 5.616 19 C 0.110 3.890 20 C 0.121 3.879 21 H 0.083 0.917 22 C -0.117 4.117 23 C -0.151 4.151 24 C 0.514 3.486 25 O -0.586 6.586 26 N -0.713 5.713 27 C 0.500 3.500 28 O -0.561 6.561 29 H 0.268 0.732 30 H 0.024 0.976 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.120 0.880 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.483 -17.842 -2.343 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.168 1.168 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.040 0.960 9 C -0.031 4.031 10 C -0.050 4.050 11 N -0.224 5.224 12 C -0.093 4.093 13 C -0.172 4.172 14 C -0.131 4.131 15 C -0.039 4.039 16 C -0.147 4.147 17 C -0.016 4.016 18 N -0.349 5.349 19 C -0.013 4.013 20 C 0.014 3.986 21 H 0.101 0.899 22 C -0.155 4.155 23 C -0.191 4.191 24 C 0.303 3.697 25 O -0.467 6.467 26 N -0.366 5.366 27 C 0.287 3.713 28 O -0.439 6.439 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.138 0.862 50 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 17.420 -17.776 -2.583 25.022 hybrid contribution -0.768 0.604 0.902 1.330 sum 16.652 -17.171 -1.681 23.979 Atomic orbital electron populations 1.70072 1.08327 1.28312 1.52338 1.26020 0.95674 1.03586 0.93756 0.85586 0.79578 0.77783 0.79281 1.19186 1.16819 1.20499 1.21345 0.91937 0.92942 1.51072 0.95953 1.19369 0.93351 0.93867 0.96533 1.22033 0.86444 0.97798 0.98722 1.63814 1.07695 1.19209 1.31718 1.23001 0.97871 0.99480 0.88992 1.22807 1.00011 0.96551 0.97849 1.22557 0.94770 1.01393 0.94372 1.22339 0.95226 0.87079 0.99243 1.22607 1.05065 0.94762 0.92288 1.22383 0.92445 0.95948 0.90863 1.48442 1.40028 1.22887 1.23539 1.22014 0.92754 0.83509 1.03029 1.22088 0.84275 0.95654 0.96582 0.89867 1.22639 1.00919 0.93463 0.98480 1.22396 0.92273 1.03237 1.01157 1.21471 0.90979 0.80160 0.77131 1.90743 1.47729 1.64362 1.43884 1.46328 1.13993 1.28605 1.47721 1.21587 0.83356 0.83988 0.82403 1.90694 1.46285 1.77785 1.29120 0.92334 0.95730 0.96769 0.95444 0.93889 0.89027 0.94960 0.87813 0.93201 0.86644 0.89640 0.90788 0.85677 0.89216 0.88997 0.90209 0.87938 0.88389 0.87029 0.86849 0.86171 0.75211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.01 0.40 5.47 84.66 0.46 0.86 16 3 Si 0.96 45.82 27.47 68.60 1.88 47.70 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.24 -10.96 6.54 99.48 0.65 -10.31 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.53 -32.86 9.66 25.60 0.25 -32.61 16 8 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 9 C 0.01 0.33 4.07 29.85 0.12 0.46 16 10 C 0.08 3.46 3.50 86.30 0.30 3.76 16 11 N -0.50 -16.94 4.85 -844.28 -4.09 -21.03 16 12 C 0.03 1.06 6.24 86.63 0.54 1.60 16 13 C -0.13 -3.12 6.85 31.87 0.22 -2.90 16 14 C -0.09 -1.73 5.96 31.69 0.19 -1.54 16 15 C 0.05 1.39 0.68 3.17 0.00 1.39 16 16 C -0.11 -2.03 6.46 31.38 0.20 -1.83 16 17 C 0.11 1.62 7.03 86.89 0.61 2.23 16 18 N -0.62 -13.02 2.82 -818.17 -2.31 -15.33 16 19 C 0.11 1.87 5.54 86.38 0.48 2.35 16 20 C 0.12 1.58 3.80 45.44 0.17 1.75 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 22 C -0.12 -0.94 6.70 31.65 0.21 -0.73 16 23 C -0.15 -1.45 6.86 30.59 0.21 -1.24 16 24 C 0.51 8.89 8.43 87.90 0.74 9.64 16 25 O -0.59 -15.69 18.03 -3.05 -0.05 -15.74 16 26 N -0.71 -9.86 5.28 -439.46 -2.32 -12.18 16 27 C 0.50 14.78 5.36 87.51 0.47 15.25 16 28 O -0.56 -21.90 15.31 -3.03 -0.05 -21.95 16 29 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.02 1.22 7.20 -2.38 -0.02 1.21 16 31 H 0.01 0.70 6.55 -2.39 -0.02 0.69 16 32 H 0.03 1.38 5.81 -2.38 -0.01 1.37 16 33 H 0.04 1.98 7.71 -2.39 -0.02 1.96 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.03 1.20 6.88 -2.39 -0.02 1.19 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 1.54 7.78 -2.39 -0.02 1.52 16 39 H 0.09 1.36 8.00 -2.39 -0.02 1.34 16 40 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 41 H 0.13 1.51 7.63 -2.39 -0.02 1.49 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 0.98 7.03 -2.39 -0.02 0.96 16 44 H 0.08 1.70 7.95 -2.38 -0.02 1.68 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.11 0.63 7.89 -2.38 -0.02 0.61 16 48 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 50 H 0.41 5.37 7.98 -92.71 -0.74 4.63 16 Total: -1.00 -85.19 387.19 -1.31 -86.50 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.15 Total: 14.75 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.18 Total: -1.57 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -8.42 Total: -109.69 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.10 Total: -37.69 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -85.19 -1.31 -86.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.093 kcal (2) G-P(sol) polarization free energy of solvation -85.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds