Wall clock time and date at job start Sat Apr 11 2020 04:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46896 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.48066 * 111.00374 * 290.42434 * 11 10 9 13 13 C 1.54976 * 104.81968 * 213.97343 * 12 11 10 14 14 C 1.55307 * 101.74061 * 36.66536 * 13 12 11 15 15 C 1.46654 * 110.99968 * 170.00101 * 11 10 9 16 16 C 1.53883 * 110.90325 * 2.15190 * 15 11 10 17 17 C 1.54648 * 101.59409 * 263.46130 * 16 15 11 18 18 N 1.46844 * 105.50182 * 335.22983 * 17 16 15 19 19 C 1.46498 * 124.36893 * 196.85347 * 18 17 16 20 20 C 1.52997 * 109.47367 * 270.03242 * 19 18 17 21 21 H 1.09003 * 110.21535 * 296.92672 * 20 19 18 22 22 C 1.54482 * 110.24643 * 174.99952 * 20 19 18 23 23 C 1.54634 * 101.76432 * 215.58192 * 22 20 19 24 24 C 1.51278 * 104.19384 * 24.79626 * 23 22 20 25 25 O 1.21283 * 124.94012 * 163.74510 * 24 23 22 26 26 N 1.34418 * 110.11723 * 343.74853 * 24 23 22 27 27 C 1.34656 * 111.26700 * 16.88614 * 18 17 16 28 28 O 1.21282 * 125.07624 * 179.14914 * 27 18 17 29 29 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 31 31 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.08997 * 110.37225 * 332.81253 * 12 11 10 35 35 H 1.09002 * 110.37116 * 95.13702 * 12 11 10 36 36 H 1.09002 * 110.97582 * 278.54665 * 13 12 11 37 37 H 1.08998 * 111.00524 * 154.79444 * 13 12 11 38 38 H 1.08999 * 110.74668 * 206.63122 * 14 13 12 39 39 H 1.08994 * 110.90379 * 83.35713 * 14 13 12 40 40 H 1.09000 * 111.00297 * 21.53740 * 16 15 11 41 41 H 1.08997 * 111.00386 * 145.38208 * 16 15 11 42 42 H 1.09005 * 110.23632 * 216.22595 * 17 16 15 43 43 H 1.08996 * 110.31099 * 94.28359 * 17 16 15 44 44 H 1.09004 * 109.47113 * 30.03053 * 19 18 17 45 45 H 1.09003 * 109.47371 * 150.02787 * 19 18 17 46 46 H 1.09006 * 110.96959 * 333.69920 * 22 20 19 47 47 H 1.08997 * 110.97176 * 97.46020 * 22 20 19 48 48 H 1.09003 * 110.48563 * 143.47392 * 23 22 20 49 49 H 1.09000 * 110.48532 * 265.98415 * 23 22 20 50 50 H 0.97002 * 124.34655 * 179.57117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5106 -4.9343 -0.0075 12 6 0.8338 -5.1557 1.2907 13 6 0.8861 -6.6892 1.5085 14 6 2.2794 -7.0444 0.9216 15 6 2.4143 -6.0630 -0.2523 16 6 3.8702 -5.5823 -0.3835 17 6 4.0260 -5.4782 -1.9186 18 7 3.0354 -6.4069 -2.4775 19 6 3.0527 -6.9037 -3.8555 20 6 2.2452 -5.9593 -4.7483 21 1 1.2011 -5.9461 -4.4355 22 6 2.3550 -6.3963 -6.2260 23 6 2.3618 -5.0342 -6.9579 24 6 2.8816 -4.0600 -5.9238 25 8 3.3020 -2.9485 -6.1661 26 7 2.8097 -4.6056 -4.6974 27 6 2.1085 -6.7426 -1.5601 28 8 1.1679 -7.4822 -1.7580 29 1 -0.4851 0.8401 0.0004 30 1 0.6283 -2.5592 0.8921 31 1 0.6202 -2.5546 -0.8878 32 1 2.8677 -3.6020 -0.9008 33 1 2.8758 -3.6067 0.8792 34 1 1.3674 -4.6406 2.0895 35 1 -0.2002 -4.8143 1.2426 36 1 0.0907 -7.1891 0.9556 37 1 0.8352 -6.9351 2.5691 38 1 2.2978 -8.0751 0.5674 39 1 3.0657 -6.8765 1.6575 40 1 4.0046 -4.6096 0.0897 41 1 4.5625 -6.3153 0.0306 42 1 5.0316 -5.7752 -2.2165 43 1 3.8196 -4.4611 -2.2517 44 1 4.0817 -6.9497 -4.2123 45 1 2.6120 -7.9001 -3.8882 46 1 3.2830 -6.9396 -6.4042 47 1 1.4923 -6.9935 -6.5213 48 1 3.0285 -5.0676 -7.8197 49 1 1.3527 -4.7626 -7.2677 50 1 3.0947 -4.1617 -3.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:27 Heat of formation + Delta-G solvation = -49.752894 kcal Electronic energy + Delta-G solvation = -31011.412138 eV Core-core repulsion = 27038.634051 eV Total energy + Delta-G solvation = -3972.778087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35102 -40.23454 -37.98938 -36.82281 -35.91171 -33.73471 -32.33499 -31.89112 -31.40363 -28.99444 -28.57781 -27.76626 -25.19061 -24.31138 -23.52898 -21.85665 -21.73384 -21.15041 -20.53441 -19.58726 -18.71600 -17.51954 -17.02804 -16.66772 -16.31215 -16.02747 -15.29476 -15.15887 -14.86280 -14.63770 -14.48028 -13.86784 -13.78043 -13.74635 -13.67800 -13.42363 -13.09814 -13.06763 -12.82294 -12.57050 -12.37781 -12.16554 -11.98038 -11.79399 -11.72713 -11.40137 -11.27892 -11.08872 -10.95451 -10.88997 -10.69437 -10.68603 -10.52065 -9.90591 -9.86308 -9.75859 -9.38293 -9.28367 -9.15325 -8.66782 -8.35640 -7.86909 -6.01032 -4.04484 2.58683 2.64727 2.86256 3.32586 3.32791 3.39150 3.40374 4.19459 4.22510 4.25246 4.32313 4.42743 4.47113 4.52659 4.77106 4.83024 4.85471 4.90161 5.00482 5.12055 5.16790 5.27692 5.30640 5.35366 5.37998 5.43697 5.49943 5.61034 5.66264 5.69739 5.76331 5.80584 5.84454 5.90864 6.03646 6.13062 6.21539 6.35800 6.42300 6.47336 6.78404 6.83082 7.04152 7.05548 7.32741 7.40126 7.70468 7.82830 8.03636 8.26274 8.28121 8.38038 9.02443 9.59992 11.10133 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.004973 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.667728 B = 5629.194465 C = 8302.931111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.031 3.969 10 C 0.054 3.946 11 N -0.505 5.505 12 C 0.050 3.950 13 C -0.129 4.129 14 C -0.117 4.117 15 C 0.069 3.931 16 C -0.164 4.164 17 C 0.105 3.895 18 N -0.623 5.623 19 C 0.122 3.878 20 C 0.111 3.889 21 H 0.089 0.911 22 C -0.125 4.125 23 C -0.155 4.155 24 C 0.516 3.484 25 O -0.534 6.534 26 N -0.722 5.722 27 C 0.550 3.450 28 O -0.521 6.521 29 H 0.261 0.739 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -18.979 -5.969 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.072 4.072 11 N -0.230 5.230 12 C -0.077 4.077 13 C -0.167 4.167 14 C -0.156 4.156 15 C -0.025 4.025 16 C -0.202 4.202 17 C -0.018 4.018 18 N -0.358 5.358 19 C -0.001 4.001 20 C 0.004 3.996 21 H 0.107 0.893 22 C -0.163 4.163 23 C -0.196 4.196 24 C 0.302 3.698 25 O -0.410 6.410 26 N -0.379 5.379 27 C 0.336 3.664 28 O -0.395 6.395 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.096 -18.718 -6.779 21.134 hybrid contribution 1.133 1.245 0.927 1.922 sum 8.229 -17.473 -5.852 20.181 Atomic orbital electron populations 1.69971 1.06037 1.26630 1.50301 1.24969 0.94796 0.99158 0.95162 0.86628 0.79790 0.83588 0.78219 1.20560 1.21210 1.19904 1.21125 0.92846 0.90942 1.51373 0.92834 1.19054 0.93874 0.89826 0.97926 1.22740 0.97149 0.88306 0.98980 1.63358 1.26924 1.00670 1.32011 1.23085 1.00493 0.94527 0.89631 1.22771 0.96902 0.96422 1.00562 1.22590 0.98443 0.98705 0.95834 1.21832 0.92447 0.94016 0.94206 1.23380 0.96144 1.05150 0.95519 1.22192 0.92156 0.93521 0.93910 1.48278 1.29380 1.47330 1.10829 1.21729 1.00906 0.97527 0.79917 1.22215 0.98952 0.82486 0.95941 0.89316 1.22629 1.04096 0.96933 0.92662 1.22340 1.04210 0.94426 0.98589 1.20874 0.77249 0.86970 0.84699 1.90782 1.47187 1.20102 1.82980 1.46458 1.64586 1.17219 1.09675 1.20475 0.80616 0.79470 0.85823 1.90649 1.29256 1.37182 1.82367 0.92959 0.96480 0.95870 0.91712 0.95251 0.93086 0.89784 0.90333 0.90959 0.90826 0.90653 0.86790 0.89873 0.90405 0.90900 0.89805 0.88559 0.89732 0.88860 0.88100 0.87714 0.74741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.78 5.02 -27.88 -0.14 0.64 16 10 C 0.05 1.05 3.34 -3.83 -0.01 1.04 16 11 N -0.50 -8.82 4.85 -217.43 -1.06 -9.87 16 12 C 0.05 0.81 5.82 -2.14 -0.01 0.80 16 13 C -0.13 -1.70 7.08 -24.46 -0.17 -1.87 16 14 C -0.12 -1.45 5.86 -25.20 -0.15 -1.59 16 15 C 0.07 0.98 0.99 -132.20 -0.13 0.84 16 16 C -0.16 -1.89 5.51 -25.40 -0.14 -2.03 16 17 C 0.11 1.14 6.45 -2.99 -0.02 1.12 16 18 N -0.62 -7.38 2.78 -172.50 -0.48 -7.86 16 19 C 0.12 1.12 5.58 -4.04 -0.02 1.09 16 20 C 0.11 1.11 3.80 -67.01 -0.25 0.85 16 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.12 -0.84 6.69 -25.09 -0.17 -1.01 16 23 C -0.16 -1.38 6.86 -26.74 -0.18 -1.57 16 24 C 0.52 7.21 8.43 -10.86 -0.09 7.12 16 25 O -0.53 -10.08 18.03 5.55 0.10 -9.98 16 26 N -0.72 -9.19 5.76 -52.77 -0.30 -9.49 16 27 C 0.55 8.26 6.97 -11.12 -0.08 8.18 16 28 O -0.52 -9.29 17.43 5.56 0.10 -9.20 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.20 5.06 -51.93 -0.26 0.94 16 33 H 0.03 0.55 6.80 -51.93 -0.35 0.20 16 34 H 0.05 0.82 7.62 -51.93 -0.40 0.43 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 39 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 40 H 0.11 1.45 4.85 -51.93 -0.25 1.19 16 41 H 0.08 0.77 7.83 -51.93 -0.41 0.36 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.90 4.89 -51.93 -0.25 0.64 16 44 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.10 0.84 7.94 -51.93 -0.41 0.42 16 46 H 0.08 0.42 7.88 -51.93 -0.41 0.01 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.41 5.79 6.35 -40.82 -0.26 5.53 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -35.48 385.69 -10.07 -45.55 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.97 Total: 3.97 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.98 Total: 0.48 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -1.10 Total: -53.34 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.20 Total: -19.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.48 -10.07 -45.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.204 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds