Wall clock time and date at job start Sat Apr 11 2020 04:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46896 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.48066 * 111.00374 * 290.42434 * 11 10 9 13 13 C 1.54976 * 104.81968 * 213.97343 * 12 11 10 14 14 C 1.55307 * 101.74061 * 36.66536 * 13 12 11 15 15 C 1.46654 * 110.99968 * 170.00101 * 11 10 9 16 16 C 1.53883 * 110.90325 * 2.15190 * 15 11 10 17 17 C 1.54648 * 101.59409 * 263.46130 * 16 15 11 18 18 N 1.46844 * 105.50182 * 335.22983 * 17 16 15 19 19 C 1.46498 * 124.36893 * 196.85347 * 18 17 16 20 20 C 1.52997 * 109.47367 * 270.03242 * 19 18 17 21 21 H 1.09003 * 110.21535 * 296.92672 * 20 19 18 22 22 C 1.54482 * 110.24643 * 174.99952 * 20 19 18 23 23 C 1.54634 * 101.76432 * 215.58192 * 22 20 19 24 24 C 1.51278 * 104.19384 * 24.79626 * 23 22 20 25 25 O 1.21283 * 124.94012 * 163.74510 * 24 23 22 26 26 N 1.34418 * 110.11723 * 343.74853 * 24 23 22 27 27 C 1.34656 * 111.26700 * 16.88614 * 18 17 16 28 28 O 1.21282 * 125.07624 * 179.14914 * 27 18 17 29 29 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 31 31 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.08997 * 110.37225 * 332.81253 * 12 11 10 35 35 H 1.09002 * 110.37116 * 95.13702 * 12 11 10 36 36 H 1.09002 * 110.97582 * 278.54665 * 13 12 11 37 37 H 1.08998 * 111.00524 * 154.79444 * 13 12 11 38 38 H 1.08999 * 110.74668 * 206.63122 * 14 13 12 39 39 H 1.08994 * 110.90379 * 83.35713 * 14 13 12 40 40 H 1.09000 * 111.00297 * 21.53740 * 16 15 11 41 41 H 1.08997 * 111.00386 * 145.38208 * 16 15 11 42 42 H 1.09005 * 110.23632 * 216.22595 * 17 16 15 43 43 H 1.08996 * 110.31099 * 94.28359 * 17 16 15 44 44 H 1.09004 * 109.47113 * 30.03053 * 19 18 17 45 45 H 1.09003 * 109.47371 * 150.02787 * 19 18 17 46 46 H 1.09006 * 110.96959 * 333.69920 * 22 20 19 47 47 H 1.08997 * 110.97176 * 97.46020 * 22 20 19 48 48 H 1.09003 * 110.48563 * 143.47392 * 23 22 20 49 49 H 1.09000 * 110.48532 * 265.98415 * 23 22 20 50 50 H 0.97002 * 124.34655 * 179.57117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5106 -4.9343 -0.0075 12 6 0.8338 -5.1557 1.2907 13 6 0.8861 -6.6892 1.5085 14 6 2.2794 -7.0444 0.9216 15 6 2.4143 -6.0630 -0.2523 16 6 3.8702 -5.5823 -0.3835 17 6 4.0260 -5.4782 -1.9186 18 7 3.0354 -6.4069 -2.4775 19 6 3.0527 -6.9037 -3.8555 20 6 2.2452 -5.9593 -4.7483 21 1 1.2011 -5.9461 -4.4355 22 6 2.3550 -6.3963 -6.2260 23 6 2.3618 -5.0342 -6.9579 24 6 2.8816 -4.0600 -5.9238 25 8 3.3020 -2.9485 -6.1661 26 7 2.8097 -4.6056 -4.6974 27 6 2.1085 -6.7426 -1.5601 28 8 1.1679 -7.4822 -1.7580 29 1 -0.4851 0.8401 0.0004 30 1 0.6283 -2.5592 0.8921 31 1 0.6202 -2.5546 -0.8878 32 1 2.8677 -3.6020 -0.9008 33 1 2.8758 -3.6067 0.8792 34 1 1.3674 -4.6406 2.0895 35 1 -0.2002 -4.8143 1.2426 36 1 0.0907 -7.1891 0.9556 37 1 0.8352 -6.9351 2.5691 38 1 2.2978 -8.0751 0.5674 39 1 3.0657 -6.8765 1.6575 40 1 4.0046 -4.6096 0.0897 41 1 4.5625 -6.3153 0.0306 42 1 5.0316 -5.7752 -2.2165 43 1 3.8196 -4.4611 -2.2517 44 1 4.0817 -6.9497 -4.2123 45 1 2.6120 -7.9001 -3.8882 46 1 3.2830 -6.9396 -6.4042 47 1 1.4923 -6.9935 -6.5213 48 1 3.0285 -5.0676 -7.8197 49 1 1.3527 -4.7626 -7.2677 50 1 3.0947 -4.1617 -3.8834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040737.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:27 Heat of formation + Delta-G solvation = -76.623941 kcal Electronic energy + Delta-G solvation = -31012.577354 eV Core-core repulsion = 27038.634051 eV Total energy + Delta-G solvation = -3973.943303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42816 -41.24363 -39.20275 -37.95236 -36.97902 -35.64591 -33.67869 -33.25304 -32.22830 -30.34031 -29.92466 -28.84187 -26.51328 -25.73712 -24.56149 -23.41317 -22.63810 -22.13703 -21.50199 -20.94672 -19.86252 -18.74877 -18.43491 -17.78852 -17.49494 -17.31350 -16.56748 -16.43548 -16.27708 -15.95915 -15.72950 -15.21186 -14.88328 -14.82770 -14.79477 -14.40874 -14.32336 -14.09420 -14.03620 -13.80544 -13.55546 -13.40445 -13.18150 -12.98331 -12.76137 -12.66584 -12.63495 -12.47546 -12.27562 -12.17387 -11.96506 -11.85683 -11.72458 -11.61470 -11.34724 -11.26107 -10.98352 -10.82011 -10.58020 -10.33640 -9.65290 -9.21104 -8.22031 -6.33303 1.37250 1.39693 1.45046 1.49417 1.55420 1.95067 2.36574 2.37897 3.07061 3.12496 3.31956 3.38156 3.43436 3.55704 3.72918 3.78067 3.84252 3.97847 4.10834 4.15707 4.22378 4.27693 4.34419 4.40991 4.48512 4.53617 4.57465 4.60118 4.74760 4.78854 4.83653 4.85927 4.88855 4.94674 5.00559 5.05721 5.09344 5.10851 5.16401 5.28308 5.44097 5.54326 5.61768 5.76109 5.77311 5.98725 6.01393 6.03253 6.17214 6.29163 6.84956 7.17085 7.18719 7.36550 8.90246 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.004973 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.667728 B = 5629.194465 C = 8302.931111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.039 3.961 10 C 0.077 3.923 11 N -0.529 5.529 12 C 0.046 3.954 13 C -0.119 4.119 14 C -0.109 4.109 15 C 0.060 3.940 16 C -0.156 4.156 17 C 0.102 3.898 18 N -0.616 5.616 19 C 0.120 3.880 20 C 0.106 3.894 21 H 0.060 0.940 22 C -0.107 4.107 23 C -0.147 4.147 24 C 0.502 3.498 25 O -0.595 6.595 26 N -0.724 5.724 27 C 0.540 3.460 28 O -0.558 6.558 29 H 0.262 0.738 30 H -0.010 1.010 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.110 0.890 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 -21.051 -6.323 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.001 3.999 10 C -0.050 4.050 11 N -0.254 5.254 12 C -0.081 4.081 13 C -0.157 4.157 14 C -0.148 4.148 15 C -0.034 4.034 16 C -0.194 4.194 17 C -0.020 4.020 18 N -0.349 5.349 19 C -0.002 4.002 20 C 0.001 3.999 21 H 0.078 0.922 22 C -0.145 4.145 23 C -0.187 4.187 24 C 0.290 3.710 25 O -0.476 6.476 26 N -0.378 5.378 27 C 0.327 3.673 28 O -0.435 6.435 29 H 0.071 0.929 30 H 0.008 0.992 31 H -0.004 1.004 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.128 0.872 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 10.157 -20.835 -7.137 24.253 hybrid contribution 0.105 1.872 1.035 2.141 sum 10.261 -18.963 -6.102 22.409 Atomic orbital electron populations 1.70125 1.07950 1.27614 1.51668 1.25945 0.95631 1.03318 0.94779 0.85505 0.79035 0.78683 0.78204 1.20544 1.20833 1.17919 1.21602 0.93644 0.91890 1.50449 0.91540 1.18872 0.94226 0.92339 0.94418 1.22338 0.95362 0.87370 0.99891 1.63108 1.28260 1.01099 1.32962 1.23058 0.98802 0.97025 0.89239 1.22704 0.97365 0.93470 1.02174 1.22617 0.98255 0.98459 0.95455 1.21976 0.93419 0.93113 0.94848 1.23365 0.94699 1.05360 0.96003 1.22319 0.93613 0.92486 0.93598 1.48368 1.28583 1.46470 1.11485 1.21985 1.02730 0.97308 0.78156 1.22359 0.97396 0.81397 0.98792 0.92189 1.22692 1.06756 0.95956 0.89110 1.22385 1.04553 0.93951 0.97804 1.21819 0.76244 0.86869 0.86022 1.90735 1.50022 1.22868 1.84016 1.46690 1.63710 1.18310 1.09121 1.20689 0.80621 0.79249 0.86773 1.90623 1.30777 1.39023 1.83114 0.92949 0.99153 1.00362 0.90913 0.94007 0.92991 0.92660 0.91977 0.88175 0.90110 0.88027 0.87929 0.86385 0.86618 0.92845 0.86478 0.87599 0.86713 0.86615 0.86026 0.87156 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.09 5.02 29.85 0.15 2.24 16 10 C 0.08 3.05 3.34 86.30 0.29 3.34 16 11 N -0.53 -18.96 4.85 -841.83 -4.08 -23.04 16 12 C 0.05 1.54 5.82 86.75 0.51 2.05 16 13 C -0.12 -3.06 7.08 32.06 0.23 -2.83 16 14 C -0.11 -2.45 5.86 31.59 0.19 -2.26 16 15 C 0.06 1.62 0.99 3.27 0.00 1.62 16 16 C -0.16 -3.18 5.51 31.45 0.17 -3.01 16 17 C 0.10 1.98 6.45 86.88 0.56 2.54 16 18 N -0.62 -13.45 2.78 -818.11 -2.27 -15.72 16 19 C 0.12 1.87 5.58 86.38 0.48 2.35 16 20 C 0.11 1.99 3.80 45.44 0.17 2.16 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 C -0.11 -1.09 6.69 31.65 0.21 -0.88 16 23 C -0.15 -2.34 6.86 30.59 0.21 -2.13 16 24 C 0.50 14.09 8.43 87.90 0.74 14.84 16 25 O -0.60 -23.31 18.03 -3.04 -0.05 -23.37 16 26 N -0.72 -18.42 5.76 -439.45 -2.53 -20.94 16 27 C 0.54 15.75 6.97 87.62 0.61 16.36 16 28 O -0.56 -19.93 17.43 -3.04 -0.05 -19.98 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H -0.01 -0.58 7.51 -2.39 -0.02 -0.59 16 31 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 32 H 0.07 2.74 5.06 -2.39 -0.01 2.72 16 33 H 0.04 1.55 6.80 -2.39 -0.02 1.53 16 34 H 0.05 1.70 7.62 -2.39 -0.02 1.69 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 1.74 7.79 -2.39 -0.02 1.72 16 39 H 0.10 1.75 7.81 -2.39 -0.02 1.73 16 40 H 0.10 2.37 4.85 -2.39 -0.01 2.36 16 41 H 0.12 1.62 7.83 -2.39 -0.02 1.60 16 42 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.05 1.28 4.89 -2.39 -0.01 1.26 16 44 H 0.12 1.10 8.09 -2.38 -0.02 1.08 16 45 H 0.11 1.53 7.94 -2.39 -0.02 1.51 16 46 H 0.11 0.56 7.88 -2.38 -0.02 0.54 16 47 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.40 11.57 6.35 -92.71 -0.59 10.98 16 Total: -1.00 -83.87 385.69 -1.11 -84.97 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.36 Total: 22.43 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.22 Total: 6.74 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -8.60 Total: -117.93 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.11 Total: -43.35 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.87 -1.11 -84.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040737.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.350 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds