Wall clock time and date at job start Sat Apr 11 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47145 * 240.00338 * 3 2 1 5 5 H 1.48500 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47131 * 120.00271 * 3 2 1 7 7 C 1.37883 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.46245 * 180.02562 * 9 7 2 11 11 C 1.53187 * 109.31488 * 181.38436 * 10 9 7 12 12 N 1.46931 * 108.77665 * 305.36515 * 11 10 9 13 13 C 1.34776 * 120.62977 * 233.59013 * 12 11 10 14 14 O 1.21345 * 119.99894 * 7.85144 * 13 12 11 15 15 C 1.49452 * 119.99682 * 187.85874 * 13 12 11 16 16 O 1.21349 * 120.00012 * 6.96703 * 15 13 12 17 17 N 1.34776 * 119.99504 * 186.96265 * 15 13 12 18 18 C 1.49148 * 127.10115 * 0.02688 * 17 15 13 19 19 C 1.56165 * 105.42977 * 168.89624 * 18 17 15 20 20 C 1.52311 * 100.52503 * 335.58631 * 19 18 17 21 21 H 1.09006 * 113.19178 * 285.70411 * 20 19 18 22 22 C 1.50342 * 128.16862 * 128.71834 * 20 19 18 23 23 C 1.53858 * 81.32550 * 227.51325 * 22 20 19 24 24 C 1.43190 * 127.09198 * 180.02562 * 17 15 13 25 25 C 1.53001 * 110.54942 * 100.99431 * 24 17 15 26 26 N 1.46898 * 109.46870 * 299.52674 * 25 24 17 27 27 C 1.46921 * 118.73807 * 53.85815 * 12 11 10 28 28 C 1.53043 * 109.45963 * 300.06765 * 9 7 2 29 29 H 0.97005 * 120.00271 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45394 * 60.02846 * 9 7 2 31 31 H 1.09002 * 109.49160 * 61.43189 * 10 9 7 32 32 H 1.08998 * 109.49402 * 301.33805 * 10 9 7 33 33 H 1.08999 * 109.58653 * 185.57963 * 11 10 9 34 34 H 1.08997 * 109.70694 * 65.21902 * 11 10 9 35 35 H 1.08993 * 110.25348 * 287.88337 * 18 17 15 36 36 H 1.08997 * 110.25178 * 49.82067 * 18 17 15 37 37 H 1.09005 * 111.20426 * 93.40496 * 19 18 17 38 38 H 1.09000 * 111.20450 * 217.72082 * 19 18 17 39 39 H 1.08998 * 114.53360 * 341.05729 * 22 20 19 40 40 H 1.09008 * 114.52802 * 114.70477 * 22 20 19 41 41 H 1.08997 * 114.94616 * 291.70431 * 23 22 20 42 42 H 1.09000 * 113.52348 * 158.55810 * 23 22 20 43 43 H 1.09002 * 109.47008 * 59.52355 * 25 24 17 44 44 H 1.08993 * 109.47446 * 179.52541 * 25 24 17 45 45 H 1.00899 * 111.00751 * 56.04701 * 26 25 24 46 46 H 1.00898 * 110.99789 * 180.02562 * 26 25 24 47 47 H 1.09008 * 109.58830 * 65.92922 * 27 12 11 48 48 H 1.09002 * 109.59048 * 186.35665 * 27 12 11 49 49 H 1.09002 * 109.49901 * 298.56591 * 28 9 7 50 50 H 1.09001 * 109.49774 * 58.63262 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2457 -3.6623 -0.0005 11 6 1.4766 -4.9867 -0.0355 12 7 0.5222 -5.0089 1.0814 13 6 0.5113 -6.0351 1.9550 14 8 1.3823 -6.8789 1.9107 15 6 -0.5735 -6.1339 2.9782 16 8 -1.5118 -5.3652 2.9439 17 7 -0.5097 -7.0770 3.9390 18 6 0.5627 -8.0958 4.1298 19 6 0.2903 -8.7282 5.5315 20 6 -0.4806 -7.5983 6.2015 21 1 0.1527 -6.7603 6.4929 22 6 -1.8041 -7.6696 6.9110 23 6 -2.0796 -6.4393 6.0292 24 6 -1.4576 -7.3074 4.9872 25 6 -2.3609 -8.4934 4.6432 26 7 -3.0954 -8.2061 3.4039 27 6 -0.4241 -3.8941 1.2243 28 6 0.3704 -2.5795 1.2486 29 1 -0.4851 0.8401 0.0004 30 1 0.6245 -2.5566 -0.8906 31 1 2.8555 -3.6193 0.9019 32 1 2.8882 -3.5914 -0.8781 33 1 2.1751 -5.8175 0.0642 34 1 0.9373 -5.0738 -0.9786 35 1 0.5012 -8.8583 3.3535 36 1 1.5429 -7.6194 4.1134 37 1 -0.3212 -9.6266 5.4465 38 1 1.2218 -8.9370 6.0576 39 1 -2.3997 -8.5503 6.6705 40 1 -1.7574 -7.4546 7.9786 41 1 -1.5012 -5.5516 6.2850 42 1 -3.1407 -6.2403 5.8793 43 1 -1.7514 -9.3865 4.5056 44 1 -3.0690 -8.6583 5.4553 45 1 -2.4614 -7.9861 2.6504 46 1 -3.6999 -8.9748 3.1554 47 1 -1.1154 -3.8913 0.3815 48 1 -0.9801 -4.0038 2.1554 49 1 0.9983 -2.5470 2.1391 50 1 -0.3217 -1.7375 1.2606 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337856708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:59 Heat of formation + Delta-G solvation = 53.624362 kcal Electronic energy + Delta-G solvation = -31032.673631 eV Core-core repulsion = 27064.378318 eV Total energy + Delta-G solvation = -3968.295313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64750 -40.20949 -38.01025 -36.98438 -35.12218 -33.97498 -33.43293 -31.25908 -31.04220 -30.00256 -26.96220 -26.16109 -25.03073 -24.95111 -23.76912 -22.58266 -22.38627 -21.23907 -19.71882 -18.88863 -18.33855 -16.98244 -16.80943 -16.66853 -16.32834 -15.99944 -15.74547 -15.41178 -15.05636 -14.52627 -14.26927 -14.08568 -13.83069 -13.45553 -13.10865 -13.06630 -12.96196 -12.80438 -12.70398 -12.58757 -12.30075 -12.19006 -11.80231 -11.65612 -11.51711 -11.32171 -11.06006 -10.90872 -10.83662 -10.73110 -10.56136 -10.35851 -10.06075 -9.78719 -9.59199 -9.16195 -9.14396 -8.90203 -8.72499 -8.47736 -8.30705 -8.03404 -5.98540 -4.05389 1.69734 2.39378 3.15892 3.31992 3.37013 3.39376 3.46188 3.72406 4.21923 4.28319 4.39875 4.41897 4.43749 4.52253 4.66884 4.80766 4.99409 5.08229 5.24672 5.30824 5.34966 5.39120 5.52029 5.57288 5.64532 5.67176 5.74260 5.82882 5.86856 5.89820 5.95385 6.02290 6.09301 6.20220 6.28515 6.46155 6.57730 6.69150 6.81227 6.89735 7.01661 7.17999 7.20175 7.30976 7.32904 7.68784 7.78950 7.93334 7.97961 8.10569 8.32568 8.43912 8.97578 9.59305 11.06745 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.003000 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.750791 B = 9330.447071 C = 9751.578821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.562 5.562 13 C 0.499 3.501 14 O -0.544 6.544 15 C 0.518 3.482 16 O -0.489 6.489 17 N -0.576 5.576 18 C 0.117 3.883 19 C -0.122 4.122 20 C -0.145 4.145 21 H 0.108 0.892 22 C -0.134 4.134 23 C -0.100 4.100 24 C 0.109 3.891 25 C 0.065 3.935 26 N -0.840 5.840 27 C 0.064 3.936 28 C -0.121 4.121 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.093 0.907 45 H 0.340 0.660 46 H 0.340 0.660 47 H 0.061 0.939 48 H 0.124 0.876 49 H 0.035 0.965 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -19.915 12.244 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.160 4.160 11 C -0.014 4.014 12 N -0.293 5.293 13 C 0.281 3.719 14 O -0.423 6.423 15 C 0.302 3.698 16 O -0.363 6.363 17 N -0.310 5.310 18 C -0.004 4.004 19 C -0.160 4.160 20 C -0.165 4.165 21 H 0.126 0.874 22 C -0.171 4.171 23 C -0.138 4.138 24 C 0.022 3.978 25 C -0.067 4.067 26 N -0.370 5.370 27 C -0.056 4.056 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.111 0.889 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.080 0.920 48 H 0.141 0.859 49 H 0.054 0.946 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.492 -19.096 12.452 23.235 hybrid contribution 1.115 0.316 -0.669 1.338 sum -3.377 -18.780 11.783 22.426 Atomic orbital electron populations 1.69836 1.05824 1.26576 1.50577 1.24964 0.94862 0.99021 0.95098 0.86679 0.79618 0.83261 0.78549 1.20339 1.21291 1.20378 1.21151 0.92836 0.90612 1.50668 0.92813 1.18670 0.92641 0.91589 0.94270 1.22001 0.98918 0.93991 1.01059 1.21868 0.91749 1.00193 0.87583 1.48215 1.34987 1.20016 1.26087 1.19928 0.85912 0.83022 0.83023 1.90662 1.37944 1.41362 1.72373 1.20223 0.87133 0.80736 0.81659 1.90573 1.34358 1.38692 1.72667 1.47702 1.23583 1.32479 1.27220 1.22999 0.91080 0.90100 0.96233 1.22464 1.01120 0.97733 0.94690 1.23996 0.94743 1.00304 0.97436 0.87365 1.22811 0.95645 0.99322 0.99330 1.22443 1.01966 0.96737 0.92677 1.21774 0.93531 0.97796 0.84689 1.22505 0.95635 0.94467 0.94068 1.58544 1.25909 1.46168 1.06373 1.23223 0.91401 0.85927 1.05073 1.22093 0.99871 0.94996 0.99011 0.92890 0.95443 0.92909 0.91949 0.90209 0.91609 0.90687 0.89406 0.90231 0.90098 0.87351 0.90583 0.88780 0.90328 0.94677 0.88913 0.84632 0.84775 0.92034 0.85882 0.94618 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 11.31 55.43 0.63 -24.52 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 11 C 0.11 1.99 6.44 -3.71 -0.02 1.97 16 12 N -0.56 -10.77 2.97 -173.01 -0.51 -11.28 16 13 C 0.50 9.02 7.70 -11.58 -0.09 8.93 16 14 O -0.54 -9.97 13.83 5.50 0.08 -9.89 16 15 C 0.52 8.57 7.00 -11.58 -0.08 8.49 16 16 O -0.49 -9.08 13.54 5.50 0.07 -9.01 16 17 N -0.58 -7.46 2.38 -172.95 -0.41 -7.87 16 18 C 0.12 1.26 5.34 -0.88 0.00 1.25 16 19 C -0.12 -0.91 6.42 -25.39 -0.16 -1.08 16 20 C -0.15 -1.21 4.46 -104.81 -0.47 -1.68 16 21 H 0.11 1.00 7.72 -51.93 -0.40 0.60 16 22 C -0.13 -0.93 7.71 -42.12 -0.32 -1.25 16 23 C -0.10 -1.01 7.47 -43.73 -0.33 -1.33 16 24 C 0.11 1.16 1.80 -146.88 -0.26 0.90 16 25 C 0.06 0.58 5.19 -3.82 -0.02 0.56 16 26 N -0.84 -8.98 9.62 -10.37 -0.10 -9.08 16 27 C 0.06 1.32 6.03 -3.49 -0.02 1.30 16 28 C -0.12 -2.88 5.17 -26.38 -0.14 -3.01 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 37 H 0.08 0.50 6.24 -51.93 -0.32 0.17 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.62 4.92 -51.93 -0.26 0.36 16 40 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.28 5.73 -51.93 -0.30 -0.02 16 44 H 0.09 0.68 5.53 -51.93 -0.29 0.39 16 45 H 0.34 4.26 7.70 -39.29 -0.30 3.96 16 46 H 0.34 2.80 9.08 -39.29 -0.36 2.44 16 47 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 48 H 0.12 2.54 4.26 -55.09 -0.23 2.31 16 49 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.10 2.77 6.03 -51.93 -0.31 2.46 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -30.43 373.12 -9.97 -40.40 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.68 Total: 8.78 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.64 Total: 0.60 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.40 Total: -52.75 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.15 Total: -18.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.43 -9.97 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337856708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.022 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds