Wall clock time and date at job start Sat Apr 11 2020 04:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48503 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47191 * 299.98937 * 3 2 1 6 6 H 1.48497 * 109.47616 * 59.99837 * 3 2 1 7 7 C 1.38817 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00127 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99545 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.63204 * 0.02623 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.94483 * 10 9 7 12 12 C 1.54609 * 102.75733 * 338.66117 * 11 10 9 13 13 C 1.47572 * 125.62698 * 180.02562 * 9 7 2 14 14 C 1.52109 * 110.58797 * 152.50674 * 12 11 10 15 15 C 1.53354 * 109.44692 * 182.65492 * 14 12 11 16 16 N 1.46928 * 108.68505 * 306.70159 * 15 14 12 17 17 C 1.34776 * 120.55119 * 234.37330 * 16 15 14 18 18 O 1.21287 * 120.00225 * 179.97438 * 17 16 15 19 19 C 1.50702 * 120.00228 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46945 * 180.02562 * 19 17 16 21 21 H 1.08999 * 110.21921 * 304.52070 * 20 19 17 22 22 C 1.54484 * 110.24345 * 182.50030 * 20 19 17 23 23 C 1.54629 * 101.76520 * 266.41623 * 22 20 19 24 24 C 1.51281 * 104.19314 * 335.19875 * 23 22 20 25 25 O 1.21281 * 124.94165 * 196.22627 * 24 23 22 26 26 N 1.34418 * 110.11728 * 16.25654 * 24 23 22 27 27 C 1.46935 * 118.89459 * 54.35435 * 16 15 14 28 28 C 1.52104 * 110.43941 * 276.53652 * 12 11 10 29 29 H 0.96990 * 120.00492 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87739 * 298.44627 * 10 9 7 31 31 H 1.08996 * 109.87620 * 59.44551 * 10 9 7 32 32 H 1.08996 * 110.73037 * 96.91706 * 11 10 9 33 33 H 1.08999 * 110.73103 * 220.22966 * 11 10 9 34 34 H 1.08999 * 110.37802 * 322.13615 * 13 9 7 35 35 H 1.08995 * 110.37595 * 84.37521 * 13 9 7 36 36 H 1.09000 * 109.47467 * 302.63745 * 14 12 11 37 37 H 1.08993 * 109.48141 * 62.66208 * 14 12 11 38 38 H 1.08998 * 109.59746 * 186.94456 * 15 14 12 39 39 H 1.08997 * 109.59954 * 66.45789 * 15 14 12 40 40 H 1.09001 * 109.46882 * 299.99763 * 19 17 16 41 41 H 1.08994 * 109.47068 * 59.99814 * 19 17 16 42 42 H 1.09007 * 110.96957 * 24.53634 * 22 20 19 43 43 H 1.09001 * 110.96683 * 148.29608 * 22 20 19 44 44 H 1.09000 * 110.48622 * 216.52355 * 23 22 20 45 45 H 1.08998 * 110.59803 * 93.93789 * 23 22 20 46 46 H 0.97001 * 124.35084 * 180.42871 * 26 24 23 47 47 H 1.09001 * 109.60511 * 185.88600 * 27 16 15 48 48 H 1.08997 * 109.60000 * 65.39907 * 27 16 15 49 49 H 1.09001 * 109.47844 * 297.24785 * 28 12 11 50 50 H 1.08998 * 109.47565 * 57.25664 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5324 -0.0005 11 6 -0.4538 -4.0442 -0.0272 12 6 0.8508 -4.6555 -0.5883 13 6 1.9346 -3.7322 0.0016 14 6 1.0308 -6.0813 -0.0899 15 6 2.3627 -6.6386 -0.6071 16 7 2.4070 -6.4735 -2.0664 17 6 2.6435 -7.5304 -2.8686 18 8 2.6775 -7.3828 -4.0720 19 6 2.8656 -8.8956 -2.2704 20 6 3.1108 -9.9092 -3.3900 21 1 2.2858 -9.8908 -4.1022 22 6 3.2787 -11.3271 -2.8001 23 6 4.8142 -11.4246 -2.6459 24 6 5.3524 -10.4488 -3.6690 25 8 6.4977 -10.4212 -4.0672 26 7 4.3770 -9.6164 -4.0719 27 6 2.1890 -5.1370 -2.6367 28 6 0.8582 -4.5884 -2.1078 29 1 -0.4850 0.8399 -0.0004 30 1 -0.5555 -2.0824 0.9002 31 1 -0.5573 -2.0506 -0.8838 32 1 -0.6518 -4.4148 0.9785 33 1 -1.2952 -4.2510 -0.6886 34 1 2.8265 -3.7454 -0.6248 35 1 2.1817 -4.0361 1.0188 36 1 1.0332 -6.0877 1.0000 37 1 0.2116 -6.7003 -0.4554 38 1 2.4383 -7.6966 -0.3564 39 1 3.1889 -6.0925 -0.1521 40 1 3.7328 -8.8665 -1.6108 41 1 1.9848 -9.1900 -1.6998 42 1 2.7835 -11.4081 -1.8324 43 1 2.9072 -12.0836 -3.4913 44 1 5.1562 -12.4358 -2.8663 45 1 5.1181 -11.1306 -1.6413 46 1 4.4946 -8.9128 -4.7292 47 1 2.1502 -5.2051 -3.7239 48 1 3.0018 -4.4750 -2.3381 49 1 0.0364 -5.1862 -2.5021 50 1 0.7397 -3.5528 -2.4264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035238708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:31 Heat of formation + Delta-G solvation = -50.506795 kcal Electronic energy + Delta-G solvation = -30129.570232 eV Core-core repulsion = 26156.759454 eV Total energy + Delta-G solvation = -3972.810779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01920 -40.13737 -38.64747 -36.81212 -35.79137 -33.18882 -31.83194 -31.57010 -30.91658 -30.26788 -28.97593 -26.46879 -25.85470 -24.68526 -23.23097 -22.54500 -21.57447 -20.76729 -20.12406 -19.70904 -17.94017 -17.75201 -17.13207 -16.66998 -16.49719 -15.93219 -15.47978 -15.08562 -15.06533 -14.60693 -14.15840 -14.03642 -13.94132 -13.75835 -13.51696 -13.33638 -13.23449 -12.98767 -12.76716 -12.75281 -12.25699 -12.08503 -11.97893 -11.78593 -11.60998 -11.37256 -11.20440 -10.99009 -10.94226 -10.83344 -10.66310 -10.19161 -10.11927 -10.06333 -9.97734 -9.73625 -9.70279 -9.55657 -9.37933 -8.61782 -8.56420 -6.83697 -5.72965 -3.06024 2.36333 2.51519 2.90692 3.15930 3.38163 3.44215 3.46196 3.92510 4.06036 4.23931 4.41334 4.48215 4.61378 4.74051 4.82162 4.90070 4.92473 5.04830 5.10231 5.20283 5.23095 5.36876 5.38350 5.41624 5.42524 5.47805 5.56920 5.59422 5.67690 5.80297 5.87722 5.89898 6.04331 6.08848 6.21912 6.29442 6.33804 6.49488 6.59357 6.62494 6.68257 6.72834 6.87058 6.90794 7.36409 7.55263 7.61339 7.81706 8.03238 8.08171 8.24475 9.20894 9.81357 10.47476 11.38630 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.002482 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.392127 B =11277.277180 C =11857.012527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.073 4.073 13 C 0.145 3.855 14 C -0.116 4.116 15 C 0.105 3.895 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.550 6.550 19 C -0.156 4.156 20 C 0.146 3.854 21 H 0.098 0.902 22 C -0.129 4.129 23 C -0.158 4.158 24 C 0.514 3.486 25 O -0.540 6.540 26 N -0.716 5.716 27 C 0.111 3.889 28 C -0.108 4.108 29 H 0.251 0.749 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.016 0.984 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.417 0.583 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -23.619 -1.332 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.174 4.174 12 C -0.074 4.074 13 C 0.019 3.981 14 C -0.154 4.154 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.303 3.697 18 O -0.429 6.429 19 C -0.197 4.197 20 C 0.040 3.960 21 H 0.116 0.884 22 C -0.166 4.166 23 C -0.199 4.199 24 C 0.300 3.700 25 O -0.417 6.417 26 N -0.372 5.372 27 C -0.011 4.011 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.258 0.742 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.634 -23.357 -2.094 23.507 hybrid contribution 0.282 1.449 0.027 1.477 sum 1.916 -21.908 -2.067 22.088 Atomic orbital electron populations 1.69970 1.04853 1.24859 1.57255 1.24783 0.95691 0.97617 1.02364 0.86079 0.78746 0.83926 0.77234 1.20542 1.21779 1.21809 1.19077 0.90379 0.82455 1.43534 0.90548 1.44503 1.01601 0.99785 1.87091 1.21145 0.84329 0.88254 1.00895 1.22901 0.95588 0.99574 0.99298 1.21079 0.97965 0.93419 0.94929 1.21546 0.94049 0.86108 0.96396 1.21747 0.96340 0.96498 1.00845 1.21863 0.99106 1.01224 0.79556 1.48167 1.69755 1.08720 1.06988 1.20488 0.76273 0.86059 0.86890 1.90662 1.52143 1.85437 1.14628 1.22254 1.04619 0.93067 0.99771 1.21379 0.87816 0.93064 0.93762 0.88424 1.22685 0.95455 0.95640 1.02862 1.22363 0.96312 1.00911 1.00268 1.20957 0.84834 0.82167 0.82029 1.90762 1.18295 1.72632 1.60047 1.46356 1.10707 1.36090 1.44034 1.21758 0.98270 0.81669 0.99361 1.21610 0.95930 1.02314 0.94766 0.93853 0.94216 0.93716 0.92537 0.92310 0.94450 0.96680 0.90555 0.91827 0.90146 0.90797 0.88442 0.87418 0.88774 0.89460 0.88036 0.87776 0.74245 0.89349 0.90870 0.92491 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.65 3.39 -170.31 -0.58 -15.23 16 10 C 0.18 4.15 5.01 -2.95 -0.01 4.13 16 11 C -0.14 -2.33 5.91 -25.12 -0.15 -2.48 16 12 C -0.07 -1.11 0.54 -153.99 -0.08 -1.19 16 13 C 0.15 2.74 5.22 -2.87 -0.01 2.73 16 14 C -0.12 -1.29 4.84 -27.00 -0.13 -1.42 16 15 C 0.11 1.01 6.08 -3.63 -0.02 0.99 16 16 N -0.60 -7.05 2.96 -172.57 -0.51 -7.56 16 17 C 0.51 5.78 7.58 -10.98 -0.08 5.69 16 18 O -0.55 -7.90 14.36 5.55 0.08 -7.82 16 19 C -0.16 -1.04 3.65 -27.88 -0.10 -1.15 16 20 C 0.15 0.98 3.02 -67.01 -0.20 0.78 16 21 H 0.10 0.69 7.99 -51.93 -0.42 0.28 16 22 C -0.13 -0.50 6.70 -25.10 -0.17 -0.67 16 23 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 24 C 0.51 5.48 8.43 -10.86 -0.09 5.39 16 25 O -0.54 -8.32 18.03 5.56 0.10 -8.22 16 26 N -0.72 -6.88 5.46 -52.76 -0.29 -7.17 16 27 C 0.11 1.57 6.12 -3.63 -0.02 1.55 16 28 C -0.11 -1.65 4.83 -27.01 -0.13 -1.78 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 31 H 0.04 1.16 7.38 -51.93 -0.38 0.78 16 32 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 34 H 0.04 0.71 6.19 -51.93 -0.32 0.38 16 35 H 0.02 0.29 7.97 -51.93 -0.41 -0.12 16 36 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.50 5.91 -51.93 -0.31 0.20 16 39 H 0.07 0.76 7.63 -51.93 -0.40 0.36 16 40 H 0.10 0.58 7.93 -51.93 -0.41 0.17 16 41 H 0.11 0.45 7.69 -51.93 -0.40 0.05 16 42 H 0.09 0.17 7.89 -51.93 -0.41 -0.24 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.42 4.65 8.19 -40.82 -0.33 4.32 16 47 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 48 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -34.23 380.56 -9.76 -44.00 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.20 Total: 0.62 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.65 Total: 4.84 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.80 Total: -56.07 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.23 -9.76 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.508 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds