Wall clock time and date at job start Sat Apr 11 2020 04:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48503 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47191 * 299.98937 * 3 2 1 6 6 H 1.48497 * 109.47616 * 59.99837 * 3 2 1 7 7 C 1.38817 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00127 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99545 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.63204 * 0.02623 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.94483 * 10 9 7 12 12 C 1.54609 * 102.75733 * 338.66117 * 11 10 9 13 13 C 1.47572 * 125.62698 * 180.02562 * 9 7 2 14 14 C 1.52109 * 110.58797 * 152.50674 * 12 11 10 15 15 C 1.53354 * 109.44692 * 182.65492 * 14 12 11 16 16 N 1.46928 * 108.68505 * 306.70159 * 15 14 12 17 17 C 1.34776 * 120.55119 * 234.37330 * 16 15 14 18 18 O 1.21287 * 120.00225 * 179.97438 * 17 16 15 19 19 C 1.50702 * 120.00228 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46945 * 180.02562 * 19 17 16 21 21 H 1.08999 * 110.21921 * 304.52070 * 20 19 17 22 22 C 1.54484 * 110.24345 * 182.50030 * 20 19 17 23 23 C 1.54629 * 101.76520 * 266.41623 * 22 20 19 24 24 C 1.51281 * 104.19314 * 335.19875 * 23 22 20 25 25 O 1.21281 * 124.94165 * 196.22627 * 24 23 22 26 26 N 1.34418 * 110.11728 * 16.25654 * 24 23 22 27 27 C 1.46935 * 118.89459 * 54.35435 * 16 15 14 28 28 C 1.52104 * 110.43941 * 276.53652 * 12 11 10 29 29 H 0.96990 * 120.00492 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.87739 * 298.44627 * 10 9 7 31 31 H 1.08996 * 109.87620 * 59.44551 * 10 9 7 32 32 H 1.08996 * 110.73037 * 96.91706 * 11 10 9 33 33 H 1.08999 * 110.73103 * 220.22966 * 11 10 9 34 34 H 1.08999 * 110.37802 * 322.13615 * 13 9 7 35 35 H 1.08995 * 110.37595 * 84.37521 * 13 9 7 36 36 H 1.09000 * 109.47467 * 302.63745 * 14 12 11 37 37 H 1.08993 * 109.48141 * 62.66208 * 14 12 11 38 38 H 1.08998 * 109.59746 * 186.94456 * 15 14 12 39 39 H 1.08997 * 109.59954 * 66.45789 * 15 14 12 40 40 H 1.09001 * 109.46882 * 299.99763 * 19 17 16 41 41 H 1.08994 * 109.47068 * 59.99814 * 19 17 16 42 42 H 1.09007 * 110.96957 * 24.53634 * 22 20 19 43 43 H 1.09001 * 110.96683 * 148.29608 * 22 20 19 44 44 H 1.09000 * 110.48622 * 216.52355 * 23 22 20 45 45 H 1.08998 * 110.59803 * 93.93789 * 23 22 20 46 46 H 0.97001 * 124.35084 * 180.42871 * 26 24 23 47 47 H 1.09001 * 109.60511 * 185.88600 * 27 16 15 48 48 H 1.08997 * 109.60000 * 65.39907 * 27 16 15 49 49 H 1.09001 * 109.47844 * 297.24785 * 28 12 11 50 50 H 1.08998 * 109.47565 * 57.25664 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5324 -0.0005 11 6 -0.4538 -4.0442 -0.0272 12 6 0.8508 -4.6555 -0.5883 13 6 1.9346 -3.7322 0.0016 14 6 1.0308 -6.0813 -0.0899 15 6 2.3627 -6.6386 -0.6071 16 7 2.4070 -6.4735 -2.0664 17 6 2.6435 -7.5304 -2.8686 18 8 2.6775 -7.3828 -4.0720 19 6 2.8656 -8.8956 -2.2704 20 6 3.1108 -9.9092 -3.3900 21 1 2.2858 -9.8908 -4.1022 22 6 3.2787 -11.3271 -2.8001 23 6 4.8142 -11.4246 -2.6459 24 6 5.3524 -10.4488 -3.6690 25 8 6.4977 -10.4212 -4.0672 26 7 4.3770 -9.6164 -4.0719 27 6 2.1890 -5.1370 -2.6367 28 6 0.8582 -4.5884 -2.1078 29 1 -0.4850 0.8399 -0.0004 30 1 -0.5555 -2.0824 0.9002 31 1 -0.5573 -2.0506 -0.8838 32 1 -0.6518 -4.4148 0.9785 33 1 -1.2952 -4.2510 -0.6886 34 1 2.8265 -3.7454 -0.6248 35 1 2.1817 -4.0361 1.0188 36 1 1.0332 -6.0877 1.0000 37 1 0.2116 -6.7003 -0.4554 38 1 2.4383 -7.6966 -0.3564 39 1 3.1889 -6.0925 -0.1521 40 1 3.7328 -8.8665 -1.6108 41 1 1.9848 -9.1900 -1.6998 42 1 2.7835 -11.4081 -1.8324 43 1 2.9072 -12.0836 -3.4913 44 1 5.1562 -12.4358 -2.8663 45 1 5.1181 -11.1306 -1.6413 46 1 4.4946 -8.9128 -4.7292 47 1 2.1502 -5.2051 -3.7239 48 1 3.0018 -4.4750 -2.3381 49 1 0.0364 -5.1862 -2.5021 50 1 0.7397 -3.5528 -2.4264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035238708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:30 Heat of formation + Delta-G solvation = -74.925914 kcal Electronic energy + Delta-G solvation = -30130.629124 eV Core-core repulsion = 26156.759454 eV Total energy + Delta-G solvation = -3973.869671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81003 -41.09085 -39.80378 -37.66649 -37.04935 -34.83107 -32.83922 -32.37419 -32.08826 -31.23895 -30.51489 -27.78322 -26.92009 -26.09293 -24.22292 -23.82751 -22.16748 -21.86063 -21.42894 -20.65347 -19.01394 -18.87381 -18.49059 -17.75559 -17.24946 -16.81985 -16.70654 -16.30203 -16.27203 -15.88066 -15.67007 -14.98131 -14.93470 -14.76472 -14.56223 -14.20383 -14.08642 -13.95262 -13.89029 -13.66110 -13.37653 -13.35705 -13.02510 -12.92867 -12.83471 -12.78894 -12.42064 -12.19095 -12.13159 -12.02975 -11.98696 -11.76269 -11.74245 -11.43892 -11.21763 -11.07705 -10.91019 -10.70164 -10.65903 -10.11108 -9.56023 -8.85529 -7.84985 -5.18657 1.43196 1.43672 1.53618 1.60682 1.69907 2.05198 2.48366 2.50303 3.33196 3.37781 3.58643 3.62301 3.74947 3.78595 3.82303 3.95192 4.00393 4.16249 4.20861 4.28093 4.33229 4.43249 4.51460 4.55051 4.64437 4.68698 4.70320 4.76818 4.79036 4.83644 4.89503 4.96961 5.01307 5.07191 5.10791 5.15481 5.18338 5.25434 5.26601 5.39487 5.44873 5.49154 5.66445 5.72748 5.81612 5.88709 6.15597 6.21764 6.52282 7.12145 7.21098 7.27328 7.80986 8.44944 9.25343 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.002482 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.392127 B =11277.277180 C =11857.012527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.186 3.814 11 C -0.121 4.121 12 C -0.060 4.060 13 C 0.142 3.858 14 C -0.109 4.109 15 C 0.104 3.896 16 N -0.605 5.605 17 C 0.507 3.493 18 O -0.590 6.590 19 C -0.147 4.147 20 C 0.139 3.861 21 H 0.092 0.908 22 C -0.112 4.112 23 C -0.150 4.150 24 C 0.500 3.500 25 O -0.603 6.603 26 N -0.722 5.722 27 C 0.120 3.880 28 C -0.099 4.099 29 H 0.245 0.755 30 H 0.000 1.000 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.027 0.973 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.403 0.597 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.070 0.930 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -27.528 0.658 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.351 5.351 10 C 0.061 3.939 11 C -0.159 4.159 12 C -0.061 4.061 13 C 0.018 3.982 14 C -0.147 4.147 15 C -0.018 4.018 16 N -0.338 5.338 17 C 0.297 3.703 18 O -0.471 6.471 19 C -0.187 4.187 20 C 0.034 3.966 21 H 0.111 0.889 22 C -0.149 4.149 23 C -0.189 4.189 24 C 0.288 3.712 25 O -0.485 6.485 26 N -0.374 5.374 27 C -0.003 4.003 28 C -0.138 4.138 29 H 0.054 0.946 30 H 0.018 0.982 31 H 0.021 0.979 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.169 0.831 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.142 0.858 46 H 0.241 0.759 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.358 -27.319 -0.064 27.353 hybrid contribution 0.370 2.708 -0.664 2.813 sum 1.727 -24.611 -0.728 24.682 Atomic orbital electron populations 1.70195 1.06190 1.24937 1.58774 1.25580 0.96545 1.00819 1.03116 0.85096 0.78228 0.79942 0.76634 1.19124 1.22213 1.21910 1.19440 0.90802 0.83975 1.42148 0.90375 1.44805 1.02378 1.01156 1.86764 1.20889 0.83745 0.92257 0.97006 1.22779 0.97175 0.94831 1.01163 1.21033 0.94963 0.95777 0.94320 1.21762 0.95025 0.84377 0.97065 1.21733 0.98108 0.92953 1.01901 1.22090 0.97873 1.04170 0.77662 1.48232 1.69830 1.07505 1.08183 1.21434 0.74931 0.87451 0.86441 1.90659 1.53584 1.86162 1.16670 1.22359 1.07134 0.89406 0.99827 1.21651 0.86108 0.95064 0.93796 0.88949 1.22749 0.93884 0.93444 1.04836 1.22421 0.97571 0.99678 0.99280 1.21920 0.84069 0.82764 0.82398 1.90718 1.20943 1.74396 1.62430 1.46635 1.11990 1.35222 1.43508 1.21382 0.96875 0.83421 0.98635 1.21470 0.97087 1.00034 0.95188 0.94604 0.98184 0.97893 0.90411 0.90791 0.94757 0.95530 0.88822 0.89523 0.85156 0.91507 0.86759 0.83112 0.84946 0.88538 0.87166 0.85754 0.75928 0.90813 0.92792 0.91100 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.31 21.65 0.22 -57.59 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.23 -13.11 10.28 84.03 0.86 -12.24 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -31.23 3.39 -692.75 -2.35 -33.57 16 10 C 0.19 9.00 5.01 86.77 0.43 9.44 16 11 C -0.12 -4.03 5.91 31.64 0.19 -3.84 16 12 C -0.06 -1.72 0.54 -51.84 -0.03 -1.74 16 13 C 0.14 5.29 5.22 86.55 0.45 5.74 16 14 C -0.11 -1.87 4.84 30.42 0.15 -1.72 16 15 C 0.10 1.47 6.08 86.42 0.53 2.00 16 16 N -0.61 -12.45 2.96 -818.27 -2.42 -14.87 16 17 C 0.51 9.94 7.58 87.66 0.66 10.60 16 18 O -0.59 -16.50 14.36 -3.05 -0.04 -16.55 16 19 C -0.15 -1.19 3.65 29.85 0.11 -1.08 16 20 C 0.14 1.35 3.02 45.45 0.14 1.49 16 21 H 0.09 1.03 7.99 -2.39 -0.02 1.02 16 22 C -0.11 -0.28 6.70 31.65 0.21 -0.06 16 23 C -0.15 -1.19 6.86 30.59 0.21 -0.98 16 24 C 0.50 10.14 8.43 87.90 0.74 10.89 16 25 O -0.60 -19.07 18.03 -3.03 -0.05 -19.12 16 26 N -0.72 -13.06 5.46 -439.44 -2.40 -15.46 16 27 C 0.12 3.40 6.12 86.41 0.53 3.93 16 28 C -0.10 -3.01 4.83 30.41 0.15 -2.86 16 29 H 0.24 14.49 8.31 -92.72 -0.77 13.72 16 30 H 0.00 0.00 7.50 -2.39 -0.02 -0.02 16 31 H 0.00 0.16 7.38 -2.39 -0.02 0.14 16 32 H 0.08 2.28 8.00 -2.39 -0.02 2.26 16 33 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 34 H 0.03 1.30 6.19 -2.39 -0.01 1.28 16 35 H 0.03 0.96 7.97 -2.39 -0.02 0.94 16 36 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.13 0.63 5.91 -2.39 -0.01 0.62 16 39 H 0.07 1.10 7.63 -2.39 -0.02 1.08 16 40 H 0.11 0.66 7.93 -2.39 -0.02 0.64 16 41 H 0.15 0.03 7.69 -2.39 -0.02 0.01 16 42 H 0.13 -0.57 7.89 -2.38 -0.02 -0.59 16 43 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.40 9.23 8.19 -92.71 -0.76 8.47 16 47 H 0.07 2.29 6.99 -2.39 -0.02 2.27 16 48 H 0.05 1.71 6.58 -2.39 -0.02 1.69 16 49 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 Total: -1.00 -84.05 380.56 0.97 -83.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.19 Total: 9.50 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.80 Total: 16.11 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.94 Total: -121.50 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.10 Total: -35.67 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -84.05 0.97 -83.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035238708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.155 kcal (2) G-P(sol) polarization free energy of solvation -84.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds