Wall clock time and date at job start Sat Apr 11 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48501 * 109.47132 * 240.00217 * 3 2 1 5 5 H 1.48499 * 109.47344 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47173 * 120.00241 * 3 2 1 7 7 C 1.38809 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00446 * 162.94242 * 7 2 1 9 9 N 1.36936 * 119.99716 * 342.93542 * 7 2 1 10 10 C 1.46936 * 120.55201 * 151.63338 * 9 7 2 11 11 C 1.53337 * 108.68590 * 125.63784 * 10 9 7 12 12 C 1.52105 * 109.44674 * 53.30192 * 11 10 9 13 13 C 1.54398 * 110.50556 * 64.08178 * 12 11 10 14 14 C 1.54455 * 102.86762 * 152.63294 * 13 12 11 15 15 N 1.47083 * 107.30139 * 338.50231 * 14 13 12 16 16 C 1.34778 * 125.62833 * 179.03061 * 15 14 13 17 17 O 1.21284 * 119.99807 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00062 * 359.97438 * 16 15 14 19 19 N 1.46499 * 109.47132 * 180.02562 * 18 16 15 20 20 C 1.46758 * 124.35472 * 89.99569 * 19 18 16 21 21 C 1.54479 * 105.47601 * 197.01686 * 20 19 18 22 22 C 1.54628 * 101.76279 * 334.58382 * 21 20 19 23 23 C 1.34426 * 124.34660 * 269.69320 * 19 18 16 24 24 O 1.21280 * 124.93751 * 359.57945 * 23 19 18 25 25 C 1.47574 * 108.74291 * 359.01104 * 15 14 13 26 26 C 1.52112 * 111.59622 * 300.68770 * 12 11 10 27 27 C 1.46936 * 120.55297 * 331.61417 * 9 7 2 28 28 H 0.96996 * 120.00009 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.59780 * 5.87683 * 10 9 7 30 30 H 1.09003 * 109.59907 * 245.39893 * 10 9 7 31 31 H 1.09001 * 109.47468 * 293.30690 * 11 10 9 32 32 H 1.09001 * 109.47278 * 173.29128 * 11 10 9 33 33 H 1.08996 * 110.73146 * 270.98147 * 13 12 11 34 34 H 1.09002 * 110.73062 * 34.29041 * 13 12 11 35 35 H 1.09005 * 109.87737 * 97.93006 * 14 13 12 36 36 H 1.09006 * 109.87897 * 219.07221 * 14 13 12 37 37 H 1.09005 * 109.46700 * 299.99443 * 18 16 15 38 38 H 1.08995 * 109.47454 * 59.99376 * 18 16 15 39 39 H 1.09004 * 110.24550 * 316.01988 * 20 19 18 40 40 H 1.08999 * 110.25008 * 77.92616 * 20 19 18 41 41 H 1.08999 * 110.96704 * 92.70272 * 21 20 19 42 42 H 1.09006 * 110.96964 * 216.42595 * 21 20 19 43 43 H 1.09003 * 110.48409 * 143.48151 * 22 21 20 44 44 H 1.09006 * 110.48458 * 265.98523 * 22 21 20 45 45 H 1.09001 * 110.37697 * 264.49048 * 25 15 14 46 46 H 1.09000 * 110.37535 * 142.14751 * 25 15 14 47 47 H 1.09002 * 109.47770 * 179.30048 * 26 12 11 48 48 H 1.08997 * 109.47990 * 299.31672 * 26 12 11 49 49 H 1.09005 * 109.60504 * 114.60524 * 27 9 7 50 50 H 1.09000 * 109.73498 * 354.20787 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0547 -1.2225 -0.2749 9 7 1.3709 -2.3620 0.3470 10 6 1.8124 -3.6516 -0.2019 11 6 2.0900 -4.6113 0.9613 12 6 0.8703 -4.6745 1.8679 13 6 -0.3349 -5.2745 1.1120 14 6 -1.1717 -5.9070 2.2458 15 7 -0.2678 -6.1300 3.3845 16 6 -0.6205 -6.6502 4.5767 17 8 0.2121 -6.7900 5.4475 18 6 -2.0493 -7.0581 4.8278 19 7 -2.1737 -7.5894 6.1874 20 6 -2.4891 -6.7772 7.3683 21 6 -2.0899 -7.6438 8.5832 22 6 -2.2035 -9.0724 8.0024 23 6 -2.0193 -8.8846 6.5126 24 8 -1.7664 -9.7727 5.7264 25 6 1.0892 -5.6905 3.0058 26 6 0.5190 -3.3053 2.4299 27 6 0.2322 -2.3380 1.2752 28 1 -0.4850 0.8400 0.0004 29 1 2.7231 -3.5088 -0.7835 30 1 1.0302 -4.0651 -0.8385 31 1 2.9480 -4.2537 1.5307 32 1 2.3031 -5.6057 0.5690 33 1 -0.9004 -4.4928 0.6050 34 1 -0.0063 -6.0356 0.4042 35 1 -1.9741 -5.2290 2.5367 36 1 -1.5893 -6.8572 1.9125 37 1 -2.6997 -6.1905 4.7163 38 1 -2.3399 -7.8247 4.1097 39 1 -1.9097 -5.8540 7.3569 40 1 -3.5552 -6.5523 7.3978 41 1 -1.0679 -7.4300 8.8959 42 1 -2.7864 -7.5016 9.4096 43 1 -1.4206 -9.7127 8.4087 44 1 -3.1868 -9.4929 8.2133 45 1 1.6771 -6.5370 2.6510 46 1 1.5831 -5.2124 3.8518 47 1 -0.3647 -3.3881 3.0627 48 1 1.3547 -2.9293 3.0200 49 1 -0.6722 -2.6501 0.7528 50 1 0.0983 -1.3298 1.6674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040600430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:28 Heat of formation + Delta-G solvation = -40.137008 kcal Electronic energy + Delta-G solvation = -30117.441526 eV Core-core repulsion = 26145.080415 eV Total energy + Delta-G solvation = -3972.361111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.86524 -40.10876 -38.36913 -36.55834 -35.85621 -33.36600 -32.92311 -30.95260 -30.01704 -29.52771 -28.33419 -27.82753 -26.40183 -23.98990 -23.07552 -22.26818 -22.22491 -21.03624 -20.11071 -19.15699 -18.18042 -17.45021 -16.95862 -16.67984 -16.35163 -16.02197 -15.45067 -15.14660 -14.87920 -14.33806 -14.06165 -13.98620 -13.79861 -13.65586 -13.49390 -13.37938 -13.07224 -12.94505 -12.78876 -12.66315 -12.44282 -12.29360 -12.00180 -11.76433 -11.57327 -11.34095 -11.33686 -11.08618 -10.76014 -10.72754 -10.49212 -10.23498 -10.20077 -10.13236 -10.03484 -9.86750 -9.56099 -9.48993 -8.92893 -8.57889 -8.47232 -6.67907 -5.81750 -3.23848 2.26406 2.58076 2.63020 3.15367 3.36660 3.42385 3.44110 4.05401 4.17008 4.38041 4.47843 4.52205 4.71165 4.71995 4.82816 4.89745 4.99759 5.10347 5.16510 5.23046 5.29966 5.36202 5.39050 5.39625 5.48714 5.50588 5.64692 5.68648 5.77414 5.90609 5.93291 6.04242 6.07395 6.13015 6.21615 6.26782 6.34084 6.48599 6.59776 6.67737 6.71462 6.82629 6.82961 6.95060 7.32545 7.52410 7.62343 7.77387 7.92165 8.13803 8.43235 9.19337 9.82724 10.39107 11.26647 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002485 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.321949 B =11264.074901 C =11802.423160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.056 4.056 13 C -0.123 4.123 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.509 3.491 17 O -0.537 6.537 18 C 0.112 3.888 19 N -0.604 5.604 20 C 0.104 3.896 21 C -0.130 4.130 22 C -0.152 4.152 23 C 0.522 3.478 24 O -0.532 6.532 25 C 0.115 3.885 26 C -0.124 4.124 27 C 0.173 3.827 28 H 0.254 0.746 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.019 0.981 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 -14.175 12.821 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.021 3.979 11 C -0.158 4.158 12 C -0.056 4.056 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.296 3.704 17 O -0.414 6.414 18 C -0.014 4.014 19 N -0.338 5.338 20 C -0.019 4.019 21 C -0.168 4.168 22 C -0.192 4.192 23 C 0.310 3.690 24 O -0.408 6.408 25 C -0.007 4.007 26 C -0.163 4.163 27 C 0.048 3.952 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.787 -14.574 12.867 20.943 hybrid contribution 0.422 1.005 -0.079 1.093 sum -7.365 -13.569 12.787 20.047 Atomic orbital electron populations 1.70010 1.05240 1.25592 1.53967 1.25024 0.95276 0.98375 1.00906 0.86388 0.78949 0.83396 0.78151 1.20880 1.21657 1.21070 1.19143 0.92578 0.84895 1.41557 0.91820 1.44028 1.36296 1.01542 1.49506 1.20906 0.97605 0.86830 0.92537 1.21850 0.96287 0.99372 0.98286 1.21007 0.95711 0.95012 0.93913 1.22717 0.96796 1.00387 0.96201 1.22189 0.93424 1.00078 0.86772 1.48580 1.11391 1.61868 1.12825 1.20753 0.91122 0.77551 0.81004 1.90694 1.52469 1.54572 1.43648 1.21166 0.94335 1.01522 0.84375 1.47816 1.70033 1.08670 1.07233 1.22117 1.00668 0.95248 0.83874 1.22576 1.03667 0.93370 0.97141 1.22290 1.05024 0.99016 0.92891 1.20939 0.74992 0.81912 0.91122 1.90724 1.48348 1.45026 1.56747 1.22366 0.83306 0.96978 0.98076 1.22005 1.00059 0.94402 0.99857 1.20805 0.88644 0.98132 0.87647 0.93620 0.92796 0.96260 0.92065 0.92857 0.88728 0.90883 0.91240 0.91614 0.87222 0.87111 0.90087 0.90761 0.89696 0.89078 0.87950 0.87831 0.91887 0.90726 0.93465 0.92587 0.96262 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 11.20 55.49 0.62 -24.83 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.73 9.57 -15.06 -0.14 -6.87 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.08 2.98 -172.12 -0.51 -14.59 16 10 C 0.15 2.90 6.24 -3.63 -0.02 2.88 16 11 C -0.12 -1.92 4.84 -27.01 -0.13 -2.05 16 12 C -0.06 -0.86 0.55 -154.10 -0.08 -0.94 16 13 C -0.12 -1.65 4.92 -25.24 -0.12 -1.78 16 14 C 0.10 1.12 6.11 -2.96 -0.02 1.10 16 15 N -0.61 -8.41 3.32 -170.76 -0.57 -8.98 16 16 C 0.51 7.36 7.92 -10.99 -0.09 7.28 16 17 O -0.54 -9.76 16.70 5.55 0.09 -9.67 16 18 C 0.11 1.20 5.61 -5.20 -0.03 1.17 16 19 N -0.60 -6.54 2.42 -173.79 -0.42 -6.97 16 20 C 0.10 0.77 7.35 -3.13 -0.02 0.74 16 21 C -0.13 -0.78 7.18 -25.10 -0.18 -0.96 16 22 C -0.15 -1.17 6.86 -26.74 -0.18 -1.35 16 23 C 0.52 6.49 8.02 -10.86 -0.09 6.40 16 24 O -0.53 -8.85 17.59 5.56 0.10 -8.75 16 25 C 0.11 1.71 5.81 -2.87 -0.02 1.70 16 26 C -0.12 -2.24 4.85 -27.00 -0.13 -2.37 16 27 C 0.17 3.86 5.01 -3.63 -0.02 3.85 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 30 H 0.02 0.38 7.62 -51.93 -0.40 -0.02 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.09 1.41 6.17 -51.93 -0.32 1.09 16 34 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 1.15 7.92 -51.93 -0.41 0.74 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 46 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 47 H 0.05 0.79 7.82 -51.93 -0.41 0.39 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 50 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -34.40 388.66 -9.68 -44.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.46 Total: -1.26 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.37 Total: 8.78 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.88 Total: -55.36 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.19 Total: -18.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.40 -9.68 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040600430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.946 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds