Wall clock time and date at job start Sat Apr 11 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00185 * 2 1 4 4 H 1.48496 * 109.47202 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.47010 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.47115 * 149.99928 * 3 2 1 7 7 C 1.38818 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00242 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.47434 * 126.05971 * 0.02562 * 9 7 2 11 11 C 1.55362 * 107.50136 * 182.32645 * 10 9 7 12 12 C 1.56030 * 102.21836 * 21.69697 * 11 10 9 13 13 H 1.09002 * 112.86001 * 203.52761 * 12 11 10 14 14 C 1.53087 * 106.39591 * 79.69501 * 12 11 10 15 15 C 1.52843 * 110.57538 * 195.41526 * 14 12 11 16 16 N 1.47153 * 107.97049 * 57.35484 * 15 14 12 17 17 C 1.34779 * 121.21233 * 122.69978 * 16 15 14 18 18 O 1.21276 * 119.99852 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00086 * 359.97438 * 17 16 15 20 20 C 1.52995 * 109.47116 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.30142 * 54.58325 * 20 19 17 22 22 C 1.52918 * 109.30128 * 173.96454 * 20 19 17 23 23 C 1.53353 * 108.67682 * 171.06271 * 22 20 19 24 24 C 1.53063 * 108.42288 * 292.47035 * 23 22 20 25 25 C 1.50181 * 109.89564 * 48.90050 * 24 23 22 26 26 O 1.21274 * 118.24820 * 162.38878 * 25 24 23 27 27 N 1.33355 * 123.50360 * 342.41681 * 25 24 23 28 28 C 1.46762 * 117.57346 * 302.71417 * 16 15 14 29 29 C 1.46466 * 126.06200 * 179.97438 * 9 7 2 30 30 H 1.08998 * 107.85885 * 269.63341 * 29 9 7 31 31 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.90660 * 301.00230 * 10 9 7 33 33 H 1.09001 * 109.90764 * 62.24392 * 10 9 7 34 34 H 1.08999 * 110.45385 * 263.77982 * 11 10 9 35 35 H 1.08995 * 111.48194 * 140.07600 * 11 10 9 36 36 H 1.09005 * 109.25659 * 315.70232 * 14 12 11 37 37 H 1.09005 * 109.25583 * 75.13113 * 14 12 11 38 38 H 1.08992 * 109.76174 * 176.97194 * 15 14 12 39 39 H 1.08992 * 109.75822 * 297.73443 * 15 14 12 40 40 H 1.09001 * 109.47106 * 300.00052 * 19 17 16 41 41 H 1.09000 * 109.46827 * 60.00157 * 19 17 16 42 42 H 1.09001 * 109.60224 * 290.82094 * 22 20 19 43 43 H 1.09002 * 109.60646 * 51.30685 * 22 20 19 44 44 H 1.08994 * 109.67385 * 172.73575 * 23 22 20 45 45 H 1.09007 * 109.69905 * 52.21812 * 23 22 20 46 46 H 1.08995 * 109.40395 * 288.76601 * 24 23 22 47 47 H 1.09002 * 109.33022 * 168.98163 * 24 23 22 48 48 H 0.97004 * 117.94697 * 182.24806 * 27 25 24 49 49 H 1.08997 * 109.22550 * 172.84031 * 28 16 15 50 50 H 1.08997 * 109.22770 * 292.19908 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4488 -4.0652 0.0596 12 6 0.8720 -4.6466 0.6530 13 1 1.0215 -5.6973 0.4043 14 6 0.8100 -4.4055 2.1635 15 6 2.1913 -4.5834 2.7930 16 7 3.1167 -3.6525 2.1277 17 6 3.8085 -2.7338 2.8305 18 8 4.5657 -1.9778 2.2597 19 6 3.6412 -2.6461 4.3256 20 6 4.5316 -1.5292 4.8738 21 1 4.3086 -0.6003 4.3488 22 6 4.2482 -1.3427 6.3648 23 6 5.2950 -0.3856 6.9477 24 6 6.6583 -1.0806 6.9134 25 6 6.8989 -1.6669 5.5518 26 8 8.0347 -1.9626 5.2467 27 7 5.9302 -1.8793 4.6602 28 6 3.2585 -3.7607 0.6710 29 6 1.9199 -3.7267 -0.0016 30 1 2.0487 -4.0345 -1.0393 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5652 -2.0580 0.8779 33 1 -0.5599 -2.1083 -0.9075 34 1 -0.6285 -4.4573 -0.9414 35 1 -1.2931 -4.2758 0.7159 36 1 0.4570 -3.3915 2.3515 37 1 0.1160 -5.1160 2.6127 38 1 2.1430 -4.3566 3.8580 39 1 2.5327 -5.6084 2.6489 40 1 2.5996 -2.4293 4.5625 41 1 3.9272 -3.5950 4.7794 42 1 3.2522 -0.9203 6.4977 43 1 4.3103 -2.3055 6.8722 44 1 5.0344 -0.1394 7.9770 45 1 5.3325 0.5257 6.3507 46 1 6.6782 -1.8757 7.6586 47 1 7.4394 -0.3543 7.1379 48 1 6.1715 -2.2932 3.8167 49 1 3.8704 -2.9352 0.3076 50 1 3.7478 -4.7037 0.4270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084985708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:59 Heat of formation + Delta-G solvation = -50.737679 kcal Electronic energy + Delta-G solvation = -31327.165651 eV Core-core repulsion = 27354.344860 eV Total energy + Delta-G solvation = -3972.820790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60839 -39.79146 -38.21464 -36.59856 -35.03229 -33.28506 -32.86236 -31.63258 -31.03604 -29.35996 -28.42648 -27.53994 -24.70535 -24.22934 -23.14441 -22.58998 -22.31021 -20.05738 -19.65535 -19.19514 -18.24022 -17.32316 -16.67744 -16.59210 -16.21553 -15.67967 -15.23096 -15.00846 -14.81709 -14.41969 -14.18459 -13.99614 -13.87361 -13.80136 -13.39406 -13.33107 -12.92787 -12.78903 -12.69148 -12.09272 -11.98967 -11.71240 -11.63734 -11.36199 -11.34577 -11.25910 -11.20558 -11.15009 -10.94517 -10.80111 -10.71984 -10.13773 -9.89085 -9.86933 -9.74609 -9.67332 -9.51482 -9.30752 -8.97623 -8.55308 -8.17731 -6.78792 -5.66307 -2.98277 2.69659 3.00633 3.35323 3.37643 3.44861 3.50756 3.57860 4.39302 4.42887 4.52796 4.56220 4.64402 4.86990 4.94864 5.03242 5.09163 5.14278 5.27257 5.33964 5.35810 5.44343 5.46732 5.50449 5.58469 5.65671 5.67897 5.68293 5.71179 5.75980 5.82728 5.94532 6.01464 6.07090 6.08655 6.23400 6.27436 6.39470 6.43215 6.58670 6.72826 6.86890 6.91289 7.04698 7.48064 7.59923 7.62055 7.83467 7.89246 8.28028 8.29950 8.59122 9.27466 9.88119 10.52586 11.45897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004336 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.760572 B = 6455.360012 C = 7731.644659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.212 4.212 8 H 0.082 0.918 9 N -0.590 5.590 10 C 0.179 3.821 11 C -0.145 4.145 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.123 4.123 15 C 0.110 3.890 16 N -0.593 5.593 17 C 0.518 3.482 18 O -0.534 6.534 19 C -0.152 4.152 20 C 0.154 3.846 21 H 0.088 0.912 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.135 4.135 25 C 0.516 3.484 26 O -0.568 6.568 27 N -0.703 5.703 28 C 0.115 3.885 29 C 0.152 3.848 30 H 0.026 0.974 31 H 0.249 0.751 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.406 0.594 49 H 0.097 0.903 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -9.609 13.817 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.340 4.340 8 H 0.100 0.900 9 N -0.315 5.315 10 C 0.055 3.945 11 C -0.183 4.183 12 C -0.120 4.120 13 H 0.092 0.908 14 C -0.161 4.161 15 C -0.013 4.013 16 N -0.325 5.325 17 C 0.306 3.694 18 O -0.411 6.411 19 C -0.193 4.193 20 C 0.048 3.952 21 H 0.106 0.894 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.175 4.175 25 C 0.302 3.698 26 O -0.448 6.448 27 N -0.356 5.356 28 C -0.008 4.008 29 C 0.044 3.956 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.244 0.756 49 H 0.116 0.884 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.904 -8.986 13.557 16.522 hybrid contribution 0.068 0.712 -0.452 0.847 sum 2.971 -8.274 13.105 15.781 Atomic orbital electron populations 1.69959 1.04783 1.24728 1.57981 1.24688 0.95546 0.97393 1.02685 0.86234 0.79073 0.83802 0.77620 1.21820 1.21959 1.20270 1.19040 0.90595 0.81950 1.42434 0.90012 1.44311 1.01364 0.99276 1.86561 1.21338 0.84358 0.88100 1.00741 1.23306 0.95911 0.99826 0.99261 1.22338 0.97099 0.97738 0.94779 0.90802 1.21835 0.95531 1.03253 0.95493 1.21667 0.90175 0.92850 0.96637 1.47815 1.42629 1.34231 1.07846 1.20277 0.80394 0.79777 0.88959 1.90708 1.38071 1.40860 1.71464 1.22112 1.02626 1.00668 0.93861 1.20753 0.80349 0.98187 0.95875 0.89405 1.21962 1.00401 1.00690 0.93962 1.21662 0.93487 0.98869 1.02175 1.21642 0.99432 1.01769 0.94612 1.20165 0.84514 0.78083 0.86989 1.90741 1.21830 1.53280 1.78989 1.45681 1.07635 1.62305 1.20022 1.21126 0.98899 1.01624 0.79188 1.20465 0.91272 0.87949 0.95940 0.95712 0.94068 0.93880 0.94085 0.92812 0.92180 0.90131 0.92039 0.90487 0.91801 0.87328 0.88754 0.89397 0.90802 0.90405 0.90830 0.88474 0.88406 0.75587 0.88439 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.88 10.38 55.49 0.58 -26.31 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.21 -5.76 9.67 -15.06 -0.15 -5.91 16 8 H 0.08 2.29 6.43 -52.49 -0.34 1.96 16 9 N -0.59 -14.08 3.21 -164.65 -0.53 -14.60 16 10 C 0.18 4.12 4.65 -2.28 -0.01 4.11 16 11 C -0.14 -2.49 6.40 -23.86 -0.15 -2.64 16 12 C -0.10 -1.54 3.64 -88.41 -0.32 -1.87 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.12 -1.70 5.04 -26.77 -0.13 -1.84 16 15 C 0.11 1.33 6.36 -3.77 -0.02 1.30 16 16 N -0.59 -9.39 2.97 -174.92 -0.52 -9.91 16 17 C 0.52 8.59 7.36 -10.98 -0.08 8.51 16 18 O -0.53 -11.02 14.01 5.56 0.08 -10.94 16 19 C -0.15 -1.77 3.71 -27.89 -0.10 -1.87 16 20 C 0.15 1.84 2.64 -68.38 -0.18 1.66 16 21 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 22 C -0.13 -1.09 5.30 -26.59 -0.14 -1.23 16 23 C -0.12 -1.00 6.03 -26.52 -0.16 -1.16 16 24 C -0.13 -1.29 6.03 -28.10 -0.17 -1.46 16 25 C 0.52 7.31 7.71 -11.87 -0.09 7.22 16 26 O -0.57 -10.49 17.78 5.56 0.10 -10.40 16 27 N -0.70 -9.80 5.01 -54.86 -0.27 -10.08 16 28 C 0.11 2.04 5.60 -5.46 -0.03 2.01 16 29 C 0.15 2.90 2.95 -68.97 -0.20 2.70 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.04 1.10 7.09 -51.93 -0.37 0.73 16 33 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.93 7.96 -51.93 -0.41 0.51 16 36 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.13 7.79 -51.93 -0.40 0.73 16 41 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.52 8.11 -51.93 -0.42 0.09 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.66 8.13 -51.92 -0.42 0.24 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.41 6.52 6.94 -40.82 -0.28 6.24 16 49 H 0.10 2.07 5.42 -51.93 -0.28 1.79 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -34.53 376.80 -10.14 -44.68 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.18 Total: 4.73 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.05 Total: 9.22 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.75 Total: -60.90 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.18 Total: -21.33 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.53 -10.14 -44.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084985708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.059 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds