Wall clock time and date at job start Sat Apr 11 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47336 * 29.78500 * 3 2 1 5 5 N 1.46499 * 109.47538 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99758 * 270.00255 * 5 4 3 7 7 C 1.50697 * 109.47029 * 269.99193 * 6 5 4 8 8 H 1.07993 * 120.00094 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00183 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00013 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00318 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47240 * 89.99631 * 11 9 7 13 13 H 1.48496 * 109.47348 * 210.00227 * 11 9 7 14 14 H 1.48506 * 109.46872 * 330.00040 * 11 9 7 15 15 C 1.34774 * 120.00278 * 89.99148 * 5 4 3 16 16 O 1.21283 * 120.00373 * 179.97438 * 15 5 4 17 17 C 1.50704 * 120.00075 * 0.02562 * 15 5 4 18 18 N 1.46902 * 109.47280 * 179.97438 * 17 15 5 19 19 C 1.46985 * 110.99620 * 301.89229 * 18 17 15 20 20 C 1.53036 * 109.46781 * 175.43543 * 19 18 17 21 21 C 1.53130 * 109.40395 * 59.76648 * 20 19 18 22 22 C 1.53251 * 109.05721 * 301.73444 * 21 20 19 23 23 C 1.45960 * 110.99854 * 177.49613 * 18 17 15 24 24 C 1.54624 * 110.36171 * 306.71041 * 23 18 17 25 25 C 1.55060 * 100.88557 * 84.91806 * 24 23 18 26 26 O 1.43708 * 105.20561 * 35.79960 * 25 24 23 27 27 C 1.43400 * 109.93717 * 335.68738 * 26 25 24 28 28 H 1.09003 * 109.46928 * 269.78095 * 3 2 1 29 29 H 1.09004 * 109.46954 * 149.78607 * 3 2 1 30 30 H 1.09003 * 109.47443 * 59.99910 * 4 3 2 31 31 H 1.09004 * 109.47186 * 299.99964 * 4 3 2 32 32 H 1.08997 * 109.47434 * 29.99794 * 6 5 4 33 33 H 1.09003 * 109.47094 * 149.99722 * 6 5 4 34 34 H 0.96996 * 120.00356 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.47153 * 59.99094 * 17 15 5 36 36 H 1.09005 * 109.46774 * 299.99223 * 17 15 5 37 37 H 1.09001 * 109.46825 * 55.44025 * 19 18 17 38 38 H 1.09000 * 109.47557 * 295.43759 * 19 18 17 39 39 H 1.09003 * 109.48360 * 299.78834 * 20 19 18 40 40 H 1.08995 * 109.47987 * 179.74575 * 20 19 18 41 41 H 1.09002 * 109.53718 * 181.86225 * 21 20 19 42 42 H 1.09006 * 109.54046 * 61.61057 * 21 20 19 43 43 H 1.08999 * 109.49064 * 296.47424 * 22 21 20 44 44 H 1.09004 * 109.49559 * 176.40222 * 22 21 20 45 45 H 1.08999 * 111.13577 * 202.82725 * 24 23 18 46 46 H 1.09005 * 111.12970 * 327.01498 * 24 23 18 47 47 H 1.09006 * 110.29986 * 276.86759 * 25 24 23 48 48 H 1.09003 * 110.29672 * 154.73228 * 25 24 23 49 49 H 1.09007 * 109.85942 * 121.63606 * 27 26 25 50 50 H 1.09000 * 109.86073 * 242.71066 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2510 -0.7165 5 7 4.5836 -1.2507 -0.7160 6 6 5.3163 -0.6200 -1.8168 7 6 5.5682 -1.6368 -2.9001 8 1 5.2172 -2.6512 -2.7808 9 6 6.2458 -1.2719 -4.0441 10 7 6.6728 -0.0365 -4.1896 11 14 6.5574 -2.5321 -5.3873 12 1 5.4274 -2.5185 -6.3506 13 1 7.8176 -2.1970 -6.0978 14 1 6.6750 -3.8827 -4.7812 15 6 5.2573 -1.8303 0.2972 16 8 6.4701 -1.8305 0.2974 17 6 4.5036 -2.4793 1.4294 18 7 5.4580 -3.0342 2.3985 19 6 6.3517 -4.0097 1.7581 20 6 7.4012 -4.4796 2.7680 21 6 6.7007 -5.1293 3.9647 22 6 5.7428 -4.1131 4.5959 23 6 4.7629 -3.6201 3.5404 24 6 3.7834 -2.5952 4.1578 25 6 2.5365 -2.8043 3.2601 26 8 2.5125 -4.2117 2.9702 27 6 3.8329 -4.7581 3.0896 28 1 2.9713 0.0047 1.0277 29 1 2.9709 0.8889 -0.5172 30 1 2.7553 -1.2550 -1.7442 31 1 2.7557 -2.1392 -0.1993 32 1 4.7272 0.2032 -2.2209 33 1 6.2685 -0.2386 -1.4480 34 1 7.1498 0.2201 -4.9942 35 1 3.8774 -3.2805 1.0369 36 1 3.8763 -1.7359 1.9215 37 1 6.8490 -3.5432 0.9078 38 1 5.7697 -4.8648 1.4144 39 1 7.9858 -3.6251 3.1089 40 1 8.0613 -5.2064 2.2946 41 1 7.4445 -5.4351 4.7005 42 1 6.1384 -6.0007 3.6290 43 1 6.3126 -3.2695 4.9854 44 1 5.1932 -4.5876 5.4090 45 1 3.5644 -2.8380 5.1976 46 1 4.1680 -1.5794 4.0659 47 1 2.6333 -2.2301 2.3386 48 1 1.6325 -2.5130 3.7948 49 1 3.8377 -5.5563 3.8320 50 1 4.1621 -5.1452 2.1253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364838310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:15 Heat of formation + Delta-G solvation = -26.231001 kcal Electronic energy + Delta-G solvation = -31306.146373 eV Core-core repulsion = 27334.388272 eV Total energy + Delta-G solvation = -3971.758101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38393 -39.08413 -37.25569 -36.77596 -35.27476 -33.73463 -32.84201 -32.28356 -30.87243 -29.76947 -28.63977 -26.96309 -25.80577 -24.04953 -23.66048 -22.99100 -22.30731 -21.28708 -18.87741 -18.54517 -17.74755 -17.50373 -16.49608 -16.36646 -15.85426 -15.78083 -15.46963 -14.96559 -14.76143 -14.59516 -14.40084 -14.20761 -13.94420 -13.84862 -13.43077 -13.24626 -13.03998 -12.94988 -12.65813 -12.50908 -12.43655 -12.22145 -11.93615 -11.90458 -11.61743 -11.56353 -11.32174 -11.28823 -11.16662 -11.00372 -10.90981 -10.72174 -10.64840 -10.45399 -10.28974 -10.13534 -9.72467 -9.60728 -8.84358 -8.49306 -8.17706 -7.85095 -6.10855 -4.15544 2.71528 2.80065 3.23161 3.26937 3.34312 3.37025 3.42320 3.68712 3.88316 4.13829 4.29770 4.40426 4.55145 4.67292 4.80804 4.84857 4.89684 4.93602 5.04690 5.09343 5.13215 5.18832 5.24518 5.25496 5.34531 5.40063 5.45212 5.48660 5.57032 5.57635 5.62793 5.72667 5.76235 5.80385 5.84037 5.88907 6.01351 6.04940 6.06926 6.35802 6.45077 6.74657 6.86789 7.06183 7.17687 7.35298 7.41469 7.56308 7.85173 8.15111 8.23591 8.81979 8.97204 9.50166 10.97183 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.004470 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.880637 B = 6262.153063 C = 8243.980276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.508 3.492 16 O -0.514 6.514 17 C 0.016 3.984 18 N -0.498 5.498 19 C 0.032 3.968 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.096 4.096 23 C 0.084 3.916 24 C -0.149 4.149 25 C 0.028 3.972 26 O -0.380 6.380 27 C 0.020 3.980 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -5.663 17.589 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.390 6.390 17 C -0.115 4.115 18 N -0.222 5.222 19 C -0.094 4.094 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.134 4.134 23 C -0.007 4.007 24 C -0.186 4.186 25 C -0.048 4.048 26 O -0.299 6.299 27 C -0.058 4.058 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.046 -5.261 17.550 19.004 hybrid contribution 0.165 -1.206 -1.123 1.656 sum -4.881 -6.467 16.428 18.317 Atomic orbital electron populations 1.81212 1.12988 1.08729 1.08994 1.29080 0.95082 0.93135 0.93012 1.19908 0.81431 1.03502 1.04421 1.21327 0.82360 0.94962 1.02466 1.48211 1.04731 1.56629 1.23251 1.19347 0.92619 0.92879 0.82441 1.21396 1.36740 0.96827 1.01770 0.92478 1.24900 0.95295 0.95380 0.98293 1.69912 1.38232 1.17046 1.27967 0.86535 0.77724 0.81682 0.81712 1.20656 1.21095 1.19938 1.20175 0.88218 0.79589 0.82582 1.90585 1.13627 1.57203 1.77595 1.22707 0.95146 1.00150 0.93467 1.61579 1.18246 1.35040 1.07311 1.22679 0.94327 0.93220 0.99205 1.21536 0.97699 1.00404 0.95416 1.21679 0.98529 0.97848 0.98138 1.21380 0.96724 0.99376 0.95938 1.22007 0.93490 0.92436 0.92750 1.23309 0.94447 1.01015 0.99865 1.24021 0.98706 0.83192 0.98903 1.88459 1.28069 1.21993 1.91427 1.23869 0.83005 0.97315 1.01618 0.87755 0.86311 0.88610 0.90815 0.94743 0.93457 0.92660 0.91840 0.87352 0.85994 0.95544 0.90835 0.91608 0.91741 0.92382 0.90484 0.91398 0.89657 0.88614 0.90768 0.89863 0.90909 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.43 18.54 42.15 0.78 -5.65 16 2 C 0.22 2.56 15.43 -20.76 -0.32 2.24 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 5 N -0.60 -10.61 2.46 -175.07 -0.43 -11.04 16 6 C 0.25 5.68 5.16 -5.20 -0.03 5.65 16 7 C -0.53 -13.85 9.39 -34.44 -0.32 -14.17 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 11 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.51 9.07 7.37 -10.99 -0.08 8.99 16 16 O -0.51 -11.29 13.26 5.55 0.07 -11.22 16 17 C 0.02 0.21 2.19 -4.97 -0.01 0.20 16 18 N -0.50 -6.54 4.36 -220.02 -0.96 -7.50 16 19 C 0.03 0.46 4.82 -3.76 -0.02 0.44 16 20 C -0.11 -1.31 6.07 -26.65 -0.16 -1.48 16 21 C -0.12 -1.16 5.82 -26.53 -0.15 -1.31 16 22 C -0.10 -0.87 4.69 -27.00 -0.13 -1.00 16 23 C 0.08 0.88 0.70 -131.28 -0.09 0.79 16 24 C -0.15 -1.33 5.66 -24.79 -0.14 -1.47 16 25 C 0.03 0.27 6.85 38.25 0.26 0.53 16 26 O -0.38 -4.70 11.07 -35.23 -0.39 -5.09 16 27 C 0.02 0.23 5.27 37.53 0.20 0.42 16 28 H 0.10 0.85 7.22 -51.93 -0.38 0.47 16 29 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.06 0.87 5.78 -51.93 -0.30 0.57 16 36 H 0.11 1.20 3.64 -51.93 -0.19 1.01 16 37 H 0.12 2.20 5.09 -51.93 -0.26 1.94 16 38 H 0.03 0.37 6.24 -51.93 -0.32 0.04 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.53 7.53 -51.93 -0.39 0.14 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 45 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 46 H 0.10 0.84 7.86 -51.93 -0.41 0.43 16 47 H 0.07 0.71 4.69 -51.93 -0.24 0.47 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.73 7.64 -51.93 -0.40 0.33 16 50 H 0.07 0.87 5.58 -51.93 -0.29 0.58 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -31.74 382.20 -8.40 -40.14 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.66 Total: 0.73 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.29 Total: 2.28 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.13 Total: -48.61 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.32 Total: -16.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.74 -8.40 -40.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364838310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.908 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds