Wall clock time and date at job start Sat Apr 11 2020 04:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 110.34891 * 2 1 4 4 O 1.21280 * 119.99781 * 122.28482 * 3 2 1 5 5 N 1.34771 * 119.99622 * 302.29158 * 3 2 1 6 6 C 1.46505 * 119.99622 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.09004 * 110.27589 * 52.90834 * 7 6 5 9 9 C 1.54603 * 110.30822 * 290.71654 * 7 6 5 10 10 C 1.54939 * 102.91935 * 219.12379 * 9 7 6 11 11 N 1.48535 * 103.22618 * 37.41330 * 10 9 7 12 12 C 1.46898 * 110.99853 * 200.27788 * 11 10 9 13 13 C 1.50703 * 109.47151 * 307.39787 * 12 11 10 14 14 O 1.21292 * 119.99831 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00064 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00176 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00022 * 359.97438 * 16 15 13 18 18 C 1.38942 * 120.00149 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00344 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47077 * 59.99976 * 20 18 16 22 22 H 1.48501 * 109.47231 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46904 * 300.00000 * 20 18 16 24 24 C 1.47895 * 105.82375 * 320.79102 * 11 10 9 25 25 C 1.51102 * 110.48289 * 237.64370 * 2 1 3 26 26 C 1.30519 * 111.11172 * 257.57956 * 25 2 1 27 27 C 1.51114 * 111.10049 * 0.02562 * 26 25 2 28 28 C 1.54631 * 104.72328 * 343.56330 * 27 26 25 29 29 H 1.09000 * 109.47249 * 59.29537 * 1 2 3 30 30 H 1.08999 * 109.47341 * 179.30034 * 1 2 3 31 31 H 1.08999 * 109.47199 * 299.30168 * 1 2 3 32 32 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 34 34 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 35 35 H 1.08990 * 110.72024 * 337.48493 * 9 7 6 36 36 H 1.09005 * 110.72336 * 100.76896 * 9 7 6 37 37 H 1.08996 * 110.66750 * 278.98033 * 10 9 7 38 38 H 1.09004 * 110.81069 * 155.91585 * 10 9 7 39 39 H 1.08992 * 109.47369 * 67.39608 * 12 11 10 40 40 H 1.09002 * 109.47122 * 187.39648 * 12 11 10 41 41 H 0.97002 * 119.99393 * 359.97438 * 15 13 12 42 42 H 0.96999 * 120.00050 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.92096 * 265.98133 * 24 11 10 44 44 H 1.09001 * 110.08460 * 144.77243 * 24 11 10 45 45 H 1.08006 * 124.44537 * 77.55310 * 25 2 1 46 46 H 1.08001 * 124.45593 * 179.97438 * 26 25 2 47 47 H 1.08993 * 110.38230 * 224.75203 * 27 26 25 48 48 H 1.08994 * 110.38726 * 102.37385 * 27 26 25 49 49 H 1.09007 * 111.03403 * 266.60205 * 28 27 26 50 50 H 1.08995 * 111.07205 * 142.67830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7909 1.7864 0.8880 5 7 1.7037 2.2615 -0.9867 6 6 2.2127 3.6353 -0.9864 7 6 1.6681 4.3812 -2.2062 8 1 0.5820 4.2979 -2.2460 9 6 2.2991 3.8228 -3.5024 10 6 2.5269 5.0971 -4.3537 11 7 2.9351 6.1100 -3.3469 12 6 2.7358 7.4721 -3.8597 13 6 3.4163 7.6099 -5.1972 14 8 4.0087 6.6661 -5.6763 15 7 3.3668 8.7819 -5.8610 16 6 3.9855 8.9071 -7.0780 17 1 4.5130 8.0667 -7.5046 18 6 3.9339 10.1151 -7.7625 19 7 3.2925 11.1378 -7.2432 20 14 4.7775 10.2860 -9.4204 21 1 4.1964 9.3078 -10.3747 22 1 4.5765 11.6631 -9.9385 23 1 6.2308 10.0231 -9.2657 24 6 2.0893 5.8618 -2.1593 25 6 2.0587 -0.7575 -1.1957 26 6 2.4686 -1.9487 -0.8539 27 6 2.2809 -2.1845 0.6268 28 6 2.0677 -0.7747 1.2254 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 1.1146 1.9628 -1.6970 33 1 1.8906 4.1419 -0.0766 34 1 3.3018 3.6193 -1.0271 35 1 3.2462 3.3277 -3.2880 36 1 1.6114 3.1418 -4.0038 37 1 1.6044 5.3982 -4.8500 38 1 3.3208 4.9385 -5.0836 39 1 1.6691 7.6651 -3.9733 40 1 3.1623 8.1901 -3.1592 41 1 2.8927 9.5365 -5.4779 42 1 3.2562 11.9810 -7.7213 43 1 1.2064 6.5001 -2.1922 44 1 2.6555 6.0580 -1.2488 45 1 2.0927 -0.3651 -2.2014 46 1 2.8862 -2.6712 -1.5394 47 1 3.1707 -2.6474 1.0533 48 1 1.4051 -2.8086 0.8039 49 1 3.0097 -0.3508 1.5732 50 1 1.3310 -0.7972 2.0283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663607622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:37 Heat of formation + Delta-G solvation = -52.555464 kcal Electronic energy + Delta-G solvation = -28568.326540 eV Core-core repulsion = 24595.426925 eV Total energy + Delta-G solvation = -3972.899615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84651 -39.40513 -38.19047 -37.51017 -35.10911 -33.93046 -32.35945 -31.43962 -31.11315 -29.46973 -29.08283 -27.17410 -25.98528 -24.98428 -23.93288 -22.03180 -21.12024 -20.51297 -20.05379 -19.25846 -18.97426 -17.88505 -17.55795 -16.51386 -16.01892 -15.85915 -15.50652 -15.33321 -14.95892 -14.69205 -14.49053 -14.05241 -13.86705 -13.75392 -13.58363 -13.33112 -13.25216 -12.82411 -12.53667 -12.47072 -12.26627 -12.06779 -12.02477 -11.69432 -11.63531 -11.59663 -11.54933 -11.27586 -11.20186 -11.14552 -10.94310 -10.72212 -10.56875 -10.41125 -10.23257 -10.02335 -9.49571 -9.31660 -9.23329 -8.37184 -8.02400 -7.90074 -6.43459 -3.84472 1.76403 2.50197 2.98268 3.18657 3.24699 3.28916 3.87746 4.04292 4.07749 4.17245 4.29298 4.48168 4.55480 4.57877 4.66054 4.80492 4.84519 4.91364 5.08303 5.13083 5.21353 5.23273 5.25790 5.29819 5.42234 5.45796 5.48628 5.50715 5.61726 5.65009 5.68648 5.74637 5.79517 5.87784 5.90329 5.91391 5.99403 6.05292 6.08356 6.24154 6.26367 6.34045 6.42417 6.68205 7.23825 7.29122 7.30729 7.53354 8.03044 8.03929 8.59681 9.15915 9.51754 10.03512 10.74063 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030645 B = 0.001779 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.459965 B =15734.777896 C =16213.331029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.725 5.725 6 C 0.130 3.870 7 C -0.110 4.110 8 H 0.078 0.922 9 C -0.122 4.122 10 C 0.038 3.962 11 N -0.495 5.495 12 C 0.036 3.964 13 C 0.442 3.558 14 O -0.581 6.581 15 N -0.561 5.561 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.041 3.959 25 C -0.161 4.161 26 C -0.150 4.150 27 C -0.104 4.104 28 C -0.107 4.107 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.118 0.882 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -21.671 14.787 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C 0.312 3.688 4 O -0.415 6.415 5 N -0.376 5.376 6 C 0.006 3.994 7 C -0.130 4.130 8 H 0.096 0.904 9 C -0.160 4.160 10 C -0.089 4.089 11 N -0.219 5.219 12 C -0.095 4.095 13 C 0.227 3.773 14 O -0.466 6.466 15 N -0.197 5.197 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.088 4.088 25 C -0.179 4.179 26 C -0.167 4.167 27 C -0.141 4.141 28 C -0.145 4.145 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.136 0.864 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.922 -21.821 15.163 27.728 hybrid contribution -1.147 0.830 -1.267 1.900 sum -9.069 -20.990 13.896 26.757 Atomic orbital electron populations 1.21757 0.91670 1.03010 1.02519 1.20691 0.97127 0.92173 0.96226 1.20401 0.80331 0.86805 0.81298 1.90691 1.36393 1.77771 1.36672 1.46003 1.51324 1.12701 1.27593 1.21494 0.99594 0.80652 0.97642 1.22256 1.00091 0.95536 0.95097 0.90363 1.22683 1.00723 0.98059 0.94553 1.23476 1.00781 0.89505 0.95145 1.64601 1.50397 1.02131 1.04803 1.22100 0.98844 0.91693 0.96901 1.19714 0.86280 0.84406 0.86869 1.90433 1.47694 1.38711 1.69766 1.41848 1.47995 1.11111 1.18793 1.19651 1.30028 0.98495 0.94791 0.87936 1.25269 0.97542 0.95044 1.00052 1.69605 1.42315 1.02759 1.39548 0.85912 0.79704 0.77170 0.81392 1.19930 1.20970 1.19864 1.22885 0.95896 0.94001 0.95976 1.23041 1.00929 0.96101 0.97809 1.23347 0.98805 0.97389 0.97204 1.21425 1.02063 0.97523 0.93045 1.22503 1.02816 0.93727 0.95460 0.91986 0.91260 0.91773 0.76643 0.91516 0.90708 0.90589 0.91559 0.94721 0.86370 0.93387 0.89202 0.77441 0.91795 0.93616 0.90151 0.85287 0.85331 0.90734 0.90453 0.89182 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 8.38 37.16 0.31 -0.47 16 2 C -0.06 -0.47 0.74 -155.76 -0.12 -0.58 16 3 C 0.53 5.70 6.55 -10.99 -0.07 5.63 16 4 O -0.54 -8.01 15.48 5.56 0.09 -7.92 16 5 N -0.72 -6.57 5.29 -60.29 -0.32 -6.89 16 6 C 0.13 1.35 4.76 -4.04 -0.02 1.33 16 7 C -0.11 -1.14 3.03 -89.26 -0.27 -1.41 16 8 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 9 C -0.12 -1.45 6.41 -24.87 -0.16 -1.60 16 10 C 0.04 0.62 5.31 -1.90 -0.01 0.61 16 11 N -0.49 -8.25 5.26 -231.89 -1.22 -9.47 16 12 C 0.04 0.65 5.52 -4.98 -0.03 0.63 16 13 C 0.44 10.34 7.49 -10.98 -0.08 10.26 16 14 O -0.58 -15.28 13.09 5.55 0.07 -15.21 16 15 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 16 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 20 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.04 0.52 6.36 -2.76 -0.02 0.50 16 25 C -0.16 -1.17 9.37 -35.69 -0.33 -1.51 16 26 C -0.15 -1.00 10.78 -35.69 -0.38 -1.39 16 27 C -0.10 -0.65 6.81 -26.82 -0.18 -0.83 16 28 C -0.11 -0.86 6.01 -25.02 -0.15 -1.01 16 29 H 0.06 0.31 7.50 -51.93 -0.39 -0.08 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 2.70 7.74 -40.82 -0.32 2.39 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.94 7.99 -51.93 -0.42 0.52 16 35 H 0.08 0.96 7.76 -51.93 -0.40 0.56 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.57 8.02 -51.93 -0.42 0.16 16 38 H 0.12 2.36 5.96 -51.93 -0.31 2.05 16 39 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 44 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 50 H 0.08 0.53 7.89 -51.93 -0.41 0.12 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -32.60 398.56 -9.77 -42.37 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.28 Total: 10.87 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.75 Total: 2.21 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.87 Total: -54.26 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.60 -9.77 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.184 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds