Wall clock time and date at job start Sat Apr 11 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.34431 * 2 1 4 4 O 1.21282 * 119.99799 * 119.16507 * 3 2 1 5 5 N 1.34771 * 120.00269 * 299.16753 * 3 2 1 6 6 C 1.46502 * 120.00183 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47168 * 179.97438 * 6 5 3 8 8 H 1.08999 * 110.63148 * 305.70008 * 7 6 5 9 9 C 1.55136 * 110.70651 * 68.80918 * 7 6 5 10 10 C 1.55117 * 101.56225 * 153.90157 * 9 7 6 11 11 N 1.47843 * 104.90583 * 323.16414 * 10 9 7 12 12 C 1.46900 * 111.00216 * 146.23775 * 11 10 9 13 13 C 1.50701 * 109.46830 * 69.15583 * 12 11 10 14 14 O 1.21293 * 120.00365 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99768 * 180.02562 * 13 12 11 16 16 C 1.37093 * 119.99989 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00252 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00109 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99837 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00197 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47078 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47209 * 120.00404 * 20 18 16 23 23 H 1.48504 * 109.47015 * 240.00103 * 20 18 16 24 24 C 1.47444 * 108.56807 * 23.96597 * 11 10 9 25 25 C 1.51104 * 110.38807 * 237.71346 * 2 1 3 26 26 C 1.30527 * 111.10523 * 257.87012 * 25 2 1 27 27 C 1.51104 * 111.10149 * 359.61668 * 26 25 2 28 28 C 1.54632 * 110.38416 * 122.41064 * 2 1 3 29 29 H 1.08999 * 109.47638 * 180.82889 * 1 2 3 30 30 H 1.08998 * 109.47666 * 300.83463 * 1 2 3 31 31 H 1.09001 * 109.47227 * 60.83515 * 1 2 3 32 32 H 0.96998 * 119.99981 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47229 * 300.00174 * 6 5 3 34 34 H 1.09006 * 109.46780 * 59.99632 * 6 5 3 35 35 H 1.08997 * 110.99517 * 272.12713 * 9 7 6 36 36 H 1.09007 * 110.98994 * 35.94368 * 9 7 6 37 37 H 1.09001 * 110.42808 * 204.23907 * 10 9 7 38 38 H 1.08998 * 110.30536 * 82.01769 * 10 9 7 39 39 H 1.08997 * 109.46794 * 189.15389 * 12 11 10 40 40 H 1.08991 * 109.46801 * 309.15688 * 12 11 10 41 41 H 0.96996 * 119.99779 * 359.97438 * 15 13 12 42 42 H 0.96996 * 120.00163 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.88524 * 239.61051 * 24 11 10 44 44 H 1.08993 * 109.88661 * 118.42152 * 24 11 10 45 45 H 1.08002 * 124.44506 * 77.60022 * 25 2 1 46 46 H 1.07991 * 124.44863 * 179.73328 * 26 25 2 47 47 H 1.08996 * 110.52393 * 225.02179 * 27 26 25 48 48 H 1.08993 * 110.29475 * 102.72697 * 27 26 25 49 49 H 1.09002 * 111.03487 * 212.20987 * 28 2 1 50 50 H 1.09001 * 111.03882 * 336.15003 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7447 1.8036 0.9172 5 7 1.7549 2.2426 -1.0191 6 6 2.2638 3.6164 -1.0188 7 6 1.7826 4.3388 -2.2787 8 1 2.0549 3.7761 -3.1717 9 6 0.2501 4.5740 -2.2247 10 6 0.0947 5.8210 -3.1340 11 7 1.2883 6.6472 -2.8538 12 6 1.7287 7.3620 -4.0592 13 6 0.7168 8.4213 -4.4128 14 8 -0.2739 8.5662 -3.7284 15 7 0.9123 9.2070 -5.4904 16 6 -0.0079 10.1710 -5.8118 17 1 -0.8896 10.3006 -5.2018 18 6 0.1939 10.9814 -6.9223 19 7 1.2667 10.8233 -7.6648 20 14 -1.0602 12.2945 -7.3607 21 1 -2.1698 12.2682 -6.3741 22 1 -0.4088 13.6288 -7.3370 23 1 -1.5988 12.0307 -8.7193 24 6 2.3562 5.7701 -2.3398 25 6 2.0564 -0.7566 -1.1974 26 6 2.4600 -1.9507 -0.8585 27 6 2.2787 -2.1863 0.6230 28 6 2.0686 -0.7769 1.2237 29 1 -0.3634 -1.0275 0.0149 30 1 -0.3634 0.5267 0.8824 31 1 -0.3634 0.5008 -0.8974 32 1 1.2027 1.9301 -1.7528 33 1 1.8958 4.1400 -0.1364 34 1 3.3536 3.6001 -1.0035 35 1 -0.2907 3.7200 -2.6325 36 1 -0.0760 4.7911 -1.2074 37 1 -0.8134 6.3672 -2.8788 38 1 0.0762 5.5245 -4.1827 39 1 2.6947 7.8305 -3.8712 40 1 1.8212 6.6576 -4.8858 41 1 1.7045 9.0908 -6.0379 42 1 1.4078 11.3893 -8.4398 43 1 2.6533 6.0933 -1.3421 44 1 3.2140 5.7975 -3.0116 45 1 2.0900 -0.3626 -2.2024 46 1 2.8714 -2.6746 -1.5463 47 1 3.1683 -2.6512 1.0477 48 1 1.4029 -2.8098 0.8022 49 1 3.0118 -0.3550 1.5708 50 1 1.3327 -0.7999 2.0275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663607623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:42 Heat of formation + Delta-G solvation = -55.806729 kcal Electronic energy + Delta-G solvation = -28443.275864 eV Core-core repulsion = 24470.235263 eV Total energy + Delta-G solvation = -3973.040601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89103 -39.39490 -38.19829 -37.55048 -35.16940 -33.87647 -32.36069 -31.42494 -31.08871 -29.55754 -29.18666 -27.22155 -26.01178 -25.00507 -23.96829 -22.10954 -21.01476 -20.70413 -20.12191 -19.19445 -19.07011 -17.87194 -17.61856 -16.60537 -16.03277 -15.80915 -15.70391 -15.20516 -15.04867 -14.61377 -14.43807 -14.13001 -13.88457 -13.77587 -13.57075 -13.35725 -13.23130 -12.85809 -12.70319 -12.55765 -12.35084 -12.10840 -12.07331 -11.75934 -11.68029 -11.63044 -11.48130 -11.29277 -11.23014 -11.16876 -10.98332 -10.86848 -10.64362 -10.33574 -10.21379 -10.08301 -9.49303 -9.37280 -9.29530 -8.43361 -7.95861 -7.86235 -6.40524 -3.81116 1.70507 2.44402 2.92423 3.16878 3.27287 3.34596 3.92789 3.99688 4.03909 4.12317 4.26323 4.43087 4.47918 4.53375 4.57400 4.76800 4.80861 4.87960 5.07954 5.12997 5.17557 5.18847 5.23486 5.24695 5.34069 5.41601 5.42031 5.45214 5.50211 5.62783 5.65585 5.72124 5.74226 5.78786 5.82453 5.86343 5.91887 5.98792 6.03342 6.14389 6.26272 6.30646 6.36396 6.46280 7.22179 7.26623 7.28587 7.56552 7.97483 8.08124 8.63742 9.19954 9.56440 10.08600 10.77455 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.035239 B = 0.001692 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.375654 B =16545.341597 C =16588.173888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.725 5.725 6 C 0.131 3.869 7 C -0.124 4.124 8 H 0.080 0.920 9 C -0.125 4.125 10 C 0.053 3.947 11 N -0.505 5.505 12 C 0.041 3.959 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.567 5.567 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.051 3.949 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.104 4.104 28 C -0.106 4.106 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -26.353 11.196 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C 0.312 3.688 4 O -0.415 6.415 5 N -0.376 5.376 6 C 0.007 3.993 7 C -0.143 4.143 8 H 0.099 0.901 9 C -0.163 4.163 10 C -0.074 4.074 11 N -0.228 5.228 12 C -0.091 4.091 13 C 0.230 3.770 14 O -0.460 6.460 15 N -0.204 5.204 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.078 4.078 25 C -0.180 4.180 26 C -0.167 4.167 27 C -0.141 4.141 28 C -0.144 4.144 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.835 -25.439 12.529 28.498 hybrid contribution -0.023 -0.045 -1.934 1.935 sum 2.812 -25.484 10.595 27.741 Atomic orbital electron populations 1.21755 0.91467 1.03050 1.02715 1.20697 0.97277 0.92078 0.96139 1.20412 0.79846 0.86887 0.81630 1.90693 1.38201 1.76981 1.35673 1.45994 1.54096 1.13004 1.24538 1.21365 0.98992 0.80963 0.97951 1.22661 0.96983 0.97128 0.97563 0.90133 1.22883 0.94148 0.97949 1.01320 1.23057 0.95448 0.91807 0.97116 1.63252 1.03942 1.26054 1.29598 1.22120 0.98981 0.96608 0.91405 1.19749 0.88543 0.85240 0.83467 1.90507 1.30850 1.72265 1.52418 1.41870 1.22967 1.31143 1.24419 1.19745 1.03156 1.09920 1.09837 0.87893 1.25255 0.97570 0.99046 0.96165 1.69620 1.26807 1.40474 1.17562 0.85806 0.80240 0.80005 0.78327 1.19239 1.20767 1.20821 1.22826 0.94186 0.89331 1.01464 1.23048 1.01031 0.96180 0.97766 1.23343 0.98808 0.97280 0.97252 1.21428 1.02139 0.97578 0.92958 1.22492 1.02772 0.93618 0.95522 0.91244 0.91661 0.91886 0.76605 0.90868 0.91369 0.91212 0.90422 0.88778 0.94097 0.89397 0.93426 0.77557 0.91981 0.90152 0.92487 0.85406 0.85368 0.90724 0.90409 0.89298 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 8.39 37.16 0.31 -0.48 16 2 C -0.06 -0.44 0.73 -155.76 -0.11 -0.56 16 3 C 0.53 5.42 6.54 -10.99 -0.07 5.35 16 4 O -0.54 -7.69 15.52 5.56 0.09 -7.60 16 5 N -0.73 -6.15 5.29 -60.29 -0.32 -6.47 16 6 C 0.13 1.26 4.96 -4.04 -0.02 1.24 16 7 C -0.12 -1.20 2.97 -88.80 -0.26 -1.47 16 8 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.12 -1.35 6.35 -24.48 -0.16 -1.51 16 10 C 0.05 0.81 5.75 -2.18 -0.01 0.80 16 11 N -0.50 -8.27 4.86 -232.55 -1.13 -9.40 16 12 C 0.04 0.72 5.05 -4.98 -0.03 0.70 16 13 C 0.44 10.52 7.58 -10.98 -0.08 10.44 16 14 O -0.58 -15.61 14.61 5.55 0.08 -15.53 16 15 N -0.57 -14.41 5.29 -10.96 -0.06 -14.46 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 C 0.05 0.62 6.46 -2.83 -0.02 0.60 16 25 C -0.16 -1.06 9.29 -35.70 -0.33 -1.39 16 26 C -0.15 -0.89 10.78 -35.70 -0.38 -1.28 16 27 C -0.10 -0.60 6.81 -26.82 -0.18 -0.78 16 28 C -0.11 -0.81 5.99 -25.01 -0.15 -0.96 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.32 7.72 -51.93 -0.40 -0.08 16 32 H 0.40 2.52 7.92 -40.82 -0.32 2.20 16 33 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.88 7.98 -51.92 -0.41 0.47 16 37 H 0.09 1.71 7.38 -51.93 -0.38 1.33 16 38 H 0.04 0.63 7.62 -51.93 -0.40 0.23 16 39 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 40 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 44 H 0.06 0.64 7.55 -51.93 -0.39 0.25 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.86 7.05 -51.93 -0.37 0.49 16 50 H 0.08 0.53 7.90 -51.93 -0.41 0.12 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -33.52 401.68 -9.70 -43.22 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.37 Total: 9.28 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.74 Total: 2.72 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.78 Total: -54.23 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.17 Total: -23.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.52 -9.70 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663607623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.589 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds