Wall clock time and date at job start Sat Apr 11 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.66569 * 2 1 4 4 O 1.21284 * 119.99665 * 231.96415 * 3 2 1 5 5 N 1.34777 * 120.00551 * 51.96704 * 3 2 1 6 6 C 1.44788 * 120.17735 * 0.33737 * 5 3 2 7 7 C 1.50999 * 112.52015 * 264.67693 * 6 5 3 8 8 C 1.51315 * 113.25032 * 285.43530 * 7 6 5 9 9 H 1.09001 * 111.31270 * 185.14537 * 8 7 6 10 10 C 1.54715 * 106.47929 * 307.56887 * 8 7 6 11 11 C 1.54234 * 104.37402 * 89.11835 * 10 8 7 12 12 C 1.50874 * 105.27372 * 11.56178 * 11 10 8 13 13 H 1.08998 * 105.90014 * 122.19687 * 12 11 10 14 14 C 1.49819 * 120.18263 * 180.61404 * 5 3 2 15 15 N 1.48059 * 109.90483 * 7.87158 * 12 11 10 16 16 C 1.36938 * 127.83898 * 155.16150 * 15 12 11 17 17 H 1.08006 * 120.00217 * 179.97438 * 16 15 12 18 18 C 1.38814 * 120.00374 * 359.97294 * 16 15 12 19 19 N 1.31621 * 119.99721 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00247 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46817 * 60.00145 * 20 18 16 22 22 H 1.48502 * 109.46791 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46902 * 300.00247 * 20 18 16 24 24 C 1.53336 * 109.70728 * 239.48069 * 2 1 3 25 25 C 1.52919 * 108.67764 * 172.71743 * 24 2 1 26 26 N 1.45755 * 110.48397 * 50.75130 * 25 24 2 27 27 C 1.33354 * 124.10790 * 340.92407 * 26 25 24 28 28 O 1.21287 * 118.24275 * 182.50386 * 27 26 25 29 29 C 1.50173 * 123.50907 * 2.22870 * 27 26 25 30 30 H 1.09001 * 109.47859 * 283.81905 * 1 2 3 31 31 H 1.08997 * 109.47492 * 43.82819 * 1 2 3 32 32 H 1.09005 * 109.47102 * 163.82261 * 1 2 3 33 33 H 1.09001 * 108.93321 * 25.28238 * 6 5 3 34 34 H 1.09001 * 108.93203 * 143.87639 * 6 5 3 35 35 H 1.09000 * 108.80030 * 164.40770 * 7 6 5 36 36 H 1.09006 * 108.55825 * 46.28874 * 7 6 5 37 37 H 1.09006 * 110.45225 * 207.83860 * 10 8 7 38 38 H 1.08991 * 110.45703 * 330.26773 * 10 8 7 39 39 H 1.08997 * 110.28688 * 252.61675 * 11 10 8 40 40 H 1.08995 * 110.28445 * 130.51178 * 11 10 8 41 41 H 1.08995 * 109.54454 * 270.53252 * 14 5 3 42 42 H 1.08996 * 109.54041 * 30.71655 * 14 5 3 43 43 H 0.96995 * 120.00036 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.60689 * 292.47401 * 24 2 1 45 45 H 1.08995 * 109.60473 * 52.95993 * 24 2 1 46 46 H 1.08993 * 109.30622 * 171.06266 * 25 24 2 47 47 H 1.09002 * 109.30160 * 290.65414 * 25 24 2 48 48 H 0.97001 * 117.94543 * 160.94682 * 26 25 24 49 49 H 1.09005 * 109.39921 * 102.54272 * 29 27 26 50 50 H 1.09004 * 109.39802 * 222.28264 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4191 0.0000 4 8 2.8507 1.7723 -0.8273 5 7 1.5868 2.2958 0.9193 6 6 0.6212 1.8763 1.9133 7 6 -0.7992 2.1903 1.5083 8 6 -1.1439 3.6587 1.6285 9 1 -2.1980 3.8369 1.4160 10 6 -0.7605 4.0834 3.0660 11 6 0.7123 4.5274 2.9541 12 6 0.9895 4.6156 1.4737 13 1 1.3133 5.6402 1.2911 14 6 2.0780 3.7111 0.9144 15 7 -0.2688 4.4381 0.7138 16 6 -0.5603 4.8895 -0.5458 17 1 -1.5270 4.6857 -0.9822 18 6 0.3866 5.6091 -1.2617 19 7 1.5648 5.8571 -0.7300 20 14 -0.0108 6.2242 -2.9802 21 1 -1.1834 7.1335 -2.9215 22 1 1.1590 6.9585 -3.5258 23 1 -0.3236 5.0690 -3.8593 24 6 2.0471 -0.7331 -1.2436 25 6 3.5650 -0.5629 -1.3165 26 7 4.1799 -0.9183 -0.0437 27 6 3.5211 -0.9779 1.1142 28 8 4.1483 -1.2406 2.1185 29 6 2.0452 -0.7314 1.2420 30 1 -0.3635 0.2455 0.9979 31 1 -0.3634 0.7413 -0.7116 32 1 -0.3633 -0.9870 -0.2863 33 1 0.7122 0.8005 2.0629 34 1 0.8393 2.3823 2.8538 35 1 -1.4791 1.6184 2.1398 36 1 -0.9411 1.8811 0.4727 37 1 -1.3845 4.9135 3.3971 38 1 -0.8552 3.2403 3.7502 39 1 1.3660 3.7885 3.4175 40 1 0.8499 5.5017 3.4230 41 1 2.9712 3.7893 1.5341 42 1 2.3148 4.0113 -0.1063 43 1 2.2266 6.3596 -1.2304 44 1 1.8009 -1.7925 -1.1724 45 1 1.5881 -0.3078 -2.1360 46 1 3.9625 -1.2070 -2.1009 47 1 3.8004 0.4756 -1.5493 48 1 5.1278 -1.1240 -0.0385 49 1 1.5263 -1.6847 1.3423 50 1 1.8551 -0.1224 2.1259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045802441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:16 Heat of formation + Delta-G solvation = 5.336416 kcal Electronic energy + Delta-G solvation = -33117.014981 eV Core-core repulsion = 29146.625745 eV Total energy + Delta-G solvation = -3970.389235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28793 -39.54116 -38.18909 -35.94249 -35.22039 -33.42781 -33.03361 -31.59280 -29.55731 -29.48116 -28.00676 -27.41108 -25.93050 -24.06470 -23.67996 -22.76124 -21.69818 -20.09809 -19.36963 -19.22187 -17.97820 -17.18753 -17.10400 -16.40903 -15.78703 -15.37835 -15.35285 -14.79077 -14.71983 -14.38936 -14.17590 -13.90514 -13.62159 -13.45065 -13.03399 -12.83594 -12.57732 -12.48999 -12.16740 -12.13165 -12.01390 -11.79965 -11.47281 -11.41556 -11.30205 -11.11718 -11.03494 -10.86069 -10.79733 -10.70011 -10.36312 -10.19688 -9.94668 -9.72201 -9.60699 -9.56267 -9.41691 -9.13859 -8.73191 -8.31677 -7.74811 -6.89987 -5.72393 -3.10476 2.74584 3.19876 3.38654 3.43304 3.44017 3.45371 3.69723 4.44044 4.48606 4.60050 4.65324 4.88905 5.06328 5.17074 5.25620 5.36808 5.38567 5.43371 5.48877 5.52856 5.59522 5.61826 5.64636 5.70481 5.79485 5.85105 5.87956 5.94096 6.05220 6.10896 6.16381 6.25430 6.31568 6.42682 6.45930 6.48109 6.59465 6.71096 6.78512 6.87099 6.97130 7.03337 7.25688 7.46443 7.48064 7.66044 7.85472 8.23947 8.26558 8.31675 8.88343 9.14562 9.74542 10.47101 11.33953 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.005455 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.085783 B = 5131.292443 C = 6073.210630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C 0.519 3.481 4 O -0.540 6.540 5 N -0.581 5.581 6 C 0.090 3.910 7 C -0.164 4.164 8 C 0.151 3.849 9 H 0.061 0.939 10 C -0.131 4.131 11 C -0.125 4.125 12 C 0.143 3.857 13 H 0.099 0.901 14 C 0.127 3.873 15 N -0.578 5.578 16 C -0.211 4.211 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.288 1.288 24 C -0.107 4.107 25 C 0.080 3.920 26 N -0.710 5.710 27 C 0.520 3.480 28 O -0.569 6.569 29 C -0.132 4.132 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.128 0.872 43 H 0.254 0.746 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.124 0.876 48 H 0.396 0.604 49 H 0.107 0.893 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -12.119 3.900 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.088 4.088 3 C 0.305 3.695 4 O -0.420 6.420 5 N -0.311 5.311 6 C -0.033 4.033 7 C -0.204 4.204 8 C 0.043 3.957 9 H 0.080 0.920 10 C -0.170 4.170 11 C -0.163 4.163 12 C 0.036 3.964 13 H 0.117 0.883 14 C 0.006 3.994 15 N -0.300 5.300 16 C -0.339 4.339 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.145 4.145 25 C -0.043 4.043 26 N -0.360 5.360 27 C 0.307 3.693 28 O -0.450 6.450 29 C -0.171 4.171 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.146 0.854 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.141 0.859 48 H 0.230 0.770 49 H 0.125 0.875 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.833 -11.790 3.746 12.506 hybrid contribution 0.054 0.123 -0.980 0.989 sum -1.779 -11.666 2.766 12.121 Atomic orbital electron populations 1.22625 0.91921 1.02481 1.04550 1.20889 0.97957 0.93982 0.95962 1.20097 0.81753 0.86472 0.81132 1.90426 1.34606 1.78626 1.38323 1.48413 1.41047 1.12128 1.29530 1.21356 0.89626 0.99294 0.93044 1.22346 0.95688 0.99908 1.02500 1.21143 0.94971 0.90012 0.89600 0.92047 1.22675 0.96683 0.99877 0.97740 1.21972 0.96101 1.00059 0.98179 1.20502 0.87283 1.01610 0.86987 0.88326 1.23276 0.94406 0.76074 1.05641 1.44932 1.10035 1.61421 1.13627 1.18898 0.98781 1.27293 0.88882 0.90514 1.24668 0.96064 1.01084 0.98490 1.69695 1.05335 1.44539 1.37025 0.86179 0.76919 0.78426 0.84096 1.21395 1.21605 1.21435 1.21705 0.95277 0.99678 0.97824 1.22187 0.93151 1.05087 0.83878 1.45404 1.13065 1.69302 1.08198 1.20012 0.90315 0.76135 0.82867 1.90730 1.68379 1.50440 1.35402 1.21984 0.92538 1.03065 0.99531 0.89545 0.90836 0.92198 0.91007 0.90281 0.92655 0.90767 0.92498 0.92195 0.92372 0.92304 0.95330 0.85430 0.93542 0.91127 0.89379 0.91770 0.85894 0.76956 0.87526 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 6.71 37.16 0.25 -1.67 16 2 C -0.08 -1.16 0.51 -155.45 -0.08 -1.24 16 3 C 0.52 9.63 5.90 -10.99 -0.06 9.57 16 4 O -0.54 -11.72 12.58 5.55 0.07 -11.65 16 5 N -0.58 -10.92 2.87 -173.97 -0.50 -11.42 16 6 C 0.09 1.38 4.14 -5.96 -0.02 1.35 16 7 C -0.16 -2.49 3.41 -28.59 -0.10 -2.59 16 8 C 0.15 2.70 4.08 -66.69 -0.27 2.43 16 9 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.13 -2.04 6.01 -25.18 -0.15 -2.19 16 11 C -0.12 -2.16 5.78 -27.15 -0.16 -2.32 16 12 C 0.14 3.09 1.94 -68.56 -0.13 2.95 16 13 H 0.10 2.52 6.13 -51.93 -0.32 2.20 16 14 C 0.13 2.81 5.67 -2.61 -0.01 2.80 16 15 N -0.58 -13.06 2.69 -156.95 -0.42 -13.48 16 16 C -0.21 -5.41 10.40 -15.06 -0.16 -5.56 16 17 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -25.00 8.15 55.49 0.45 -24.55 16 20 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.11 -1.31 4.69 -26.60 -0.12 -1.43 16 25 C 0.08 1.04 6.49 -4.49 -0.03 1.01 16 26 N -0.71 -9.79 5.44 -61.39 -0.33 -10.12 16 27 C 0.52 8.10 7.38 -11.87 -0.09 8.01 16 28 O -0.57 -10.76 17.78 5.55 0.10 -10.66 16 29 C -0.13 -1.71 4.39 -28.10 -0.12 -1.83 16 30 H 0.09 0.98 3.66 -51.93 -0.19 0.79 16 31 H 0.07 1.07 6.79 -51.93 -0.35 0.71 16 32 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 33 H 0.07 0.93 2.77 -51.93 -0.14 0.78 16 34 H 0.08 1.20 3.93 -51.93 -0.20 0.99 16 35 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.07 1.24 5.08 -51.93 -0.26 0.97 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 39 H 0.06 0.93 6.16 -51.93 -0.32 0.61 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.13 3.40 5.34 -51.93 -0.28 3.12 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.12 2.01 5.04 -52.44 -0.26 1.75 16 48 H 0.40 4.96 8.80 -40.82 -0.36 4.60 16 49 H 0.11 1.09 8.10 -51.93 -0.42 0.66 16 50 H 0.11 1.48 5.36 -51.93 -0.28 1.20 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -31.13 347.15 -8.91 -40.04 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.12 Total: 10.98 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.36 Total: 9.00 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.80 Total: -59.57 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.13 -8.91 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045802441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.375 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds