Wall clock time and date at job start Sat Apr 11 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38000 * 120.81737 * 2 1 4 4 C 1.39126 * 119.26175 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52507 * 179.97438 * 4 3 2 6 6 N 1.32434 * 120.95217 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.80131 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.68933 * 179.97438 * 7 6 4 9 9 C 1.39567 * 120.62003 * 359.97438 * 7 6 4 10 10 C 1.47616 * 120.49716 * 179.97438 * 9 7 6 11 11 O 1.21587 * 120.00402 * 270.04949 * 10 9 7 12 12 N 1.34779 * 119.99556 * 90.04622 * 10 9 7 13 13 C 1.46501 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47542 * 325.00352 * 13 12 10 15 15 C 1.53007 * 109.47255 * 85.00029 * 13 12 10 16 16 C 1.53001 * 109.47315 * 205.00286 * 13 12 10 17 17 C 1.52998 * 109.47314 * 64.99644 * 16 13 12 18 18 C 1.52996 * 109.47262 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46930 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00196 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00301 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99720 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00378 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47001 * 89.99910 * 25 23 21 27 27 H 1.48489 * 109.47344 * 210.00509 * 25 23 21 28 28 H 1.48503 * 109.47029 * 330.00821 * 25 23 21 29 29 H 1.09008 * 109.46507 * 90.00322 * 1 2 3 30 30 H 1.08995 * 109.47633 * 210.00111 * 1 2 3 31 31 H 1.09003 * 109.47431 * 330.00519 * 1 2 3 32 32 H 1.07992 * 120.36859 * 0.04054 * 3 2 1 33 33 H 0.96703 * 113.99869 * 270.02078 * 5 4 3 34 34 H 1.09000 * 109.47208 * 90.00075 * 8 7 6 35 35 H 1.09003 * 109.47151 * 210.00001 * 8 7 6 36 36 H 1.08998 * 109.47545 * 329.99947 * 8 7 6 37 37 H 0.96997 * 120.00190 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.46560 * 60.00194 * 15 13 12 39 39 H 1.09000 * 109.46810 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47109 * 300.00030 * 15 13 12 41 41 H 1.09001 * 109.47649 * 185.00193 * 16 13 12 42 42 H 1.09001 * 109.46819 * 305.00268 * 16 13 12 43 43 H 1.09001 * 109.47211 * 300.00817 * 17 16 13 44 44 H 1.09001 * 109.46668 * 60.00532 * 17 16 13 45 45 H 1.09001 * 109.46931 * 300.00109 * 18 17 16 46 46 H 1.09001 * 109.47121 * 60.00471 * 18 17 16 47 47 H 1.09001 * 109.47253 * 299.99729 * 19 18 17 48 48 H 1.09003 * 109.47479 * 60.00053 * 19 18 17 49 49 H 0.97000 * 119.99668 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99847 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1852 0.0000 4 6 3.6047 1.1474 -0.0005 5 8 4.3042 2.3078 -0.0011 6 7 4.2548 -0.0064 -0.0016 7 6 3.6205 -1.1600 -0.0016 8 6 4.4081 -2.4447 -0.0034 9 6 2.2256 -1.2043 0.0000 10 6 1.5171 -2.4993 -0.0007 11 8 1.2249 -3.0320 -1.0538 12 7 1.1943 -3.0913 1.1663 13 6 0.4918 -4.3769 1.1658 14 1 -0.2000 -4.4126 0.3241 15 6 1.5081 -5.5135 1.0391 16 6 -0.2875 -4.5328 2.4732 17 6 -1.3867 -3.4708 2.5416 18 6 -2.1655 -3.6264 3.8493 19 6 -3.2651 -2.5648 3.9173 20 7 -4.0114 -2.7141 5.1692 21 6 -5.0509 -1.8687 5.4517 22 1 -5.3210 -1.0921 4.7515 23 6 -5.7575 -2.0099 6.6382 24 7 -6.7570 -1.1977 6.9095 25 14 -5.2909 -3.3535 7.8491 26 1 -4.2798 -2.8309 8.8030 27 1 -6.4984 -3.7878 8.5962 28 1 -4.7231 -4.5100 7.1106 29 1 -0.3632 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6935 2.1314 0.0007 33 1 4.5066 2.6446 -0.8847 34 1 4.5992 -2.7552 1.0238 35 1 3.8386 -3.2193 -0.5171 36 1 5.3562 -2.2891 -0.5182 37 1 1.4271 -2.6662 2.0065 38 1 2.1998 -5.4778 1.8808 39 1 0.9854 -6.4700 1.0391 40 1 2.0633 -5.4024 0.1076 41 1 -0.7377 -5.5248 2.5118 42 1 0.3907 -4.4085 3.3174 43 1 -0.9365 -2.4789 2.5030 44 1 -2.0650 -3.5952 1.6974 45 1 -2.6157 -4.6184 3.8882 46 1 -1.4871 -3.5019 4.6933 47 1 -2.8153 -1.5727 3.8782 48 1 -3.9436 -2.6897 3.0733 49 1 -3.7690 -3.4118 5.7980 50 1 -7.2505 -1.2961 7.7387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176685708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:05 Heat of formation + Delta-G solvation = -54.809414 kcal Electronic energy + Delta-G solvation = -28703.887337 eV Core-core repulsion = 24730.889983 eV Total energy + Delta-G solvation = -3972.997354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38077 -39.83326 -37.71884 -36.99555 -35.46704 -34.73725 -33.39268 -32.45251 -31.41168 -30.55918 -28.46967 -28.12028 -27.81118 -24.64339 -23.98870 -22.10409 -21.74841 -21.26587 -20.96235 -20.78386 -18.88852 -18.12137 -17.61494 -17.50391 -16.76160 -16.10284 -15.34865 -15.02851 -14.88751 -14.64152 -14.55193 -14.20034 -14.08203 -13.73500 -13.67277 -13.55026 -13.44062 -13.11598 -13.10506 -12.76084 -12.73463 -12.55065 -12.47413 -12.31368 -12.03868 -11.96936 -11.71575 -11.51634 -11.22646 -10.91478 -10.88799 -10.50839 -10.43794 -10.36497 -10.12111 -9.97734 -9.83836 -9.60002 -9.39417 -9.23117 -8.89959 -7.23417 -5.77476 -3.12806 0.32077 0.69782 2.19649 2.77829 2.88965 3.26511 3.36279 3.38917 3.44122 3.98946 4.08046 4.26284 4.45609 4.58411 4.58888 4.73106 4.79243 4.84907 4.89934 5.00918 5.12184 5.13311 5.14324 5.20750 5.25485 5.28543 5.44011 5.45107 5.50850 5.52834 5.53622 5.61443 5.67051 5.72289 5.76584 5.82318 5.96211 5.99427 6.03409 6.07410 6.13901 6.23957 6.31378 6.74338 6.78427 6.99644 7.12472 7.41695 7.83089 7.99228 8.41854 9.21215 9.93724 10.13849 11.41084 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.002342 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.681579 B =11952.923819 C =13388.346652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.017 3.983 3 C -0.195 4.195 4 C 0.334 3.666 5 O -0.480 6.480 6 N -0.508 5.508 7 C 0.194 3.806 8 C -0.113 4.113 9 C -0.196 4.196 10 C 0.577 3.423 11 O -0.529 6.529 12 N -0.713 5.713 13 C 0.139 3.861 14 H 0.091 0.909 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.130 4.130 19 C 0.157 3.843 20 N -0.758 5.758 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.002 3.998 24 N -0.935 5.935 25 Si 0.886 3.114 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.404 0.596 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.601 -1.850 -17.230 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 C -0.216 4.216 4 C 0.155 3.845 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.202 4.202 10 C 0.361 3.639 11 O -0.405 6.405 12 N -0.365 5.365 13 C 0.036 3.964 14 H 0.109 0.891 15 C -0.222 4.222 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.168 4.168 19 C 0.030 3.970 20 N -0.404 5.404 21 C -0.374 4.374 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.166 0.834 33 H 0.262 0.738 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 25.071 -2.035 -17.414 30.593 hybrid contribution -0.445 -0.387 0.943 1.113 sum 24.625 -2.422 -16.471 29.725 Atomic orbital electron populations 1.20993 0.88903 1.04514 1.03959 1.20257 0.97154 0.90774 0.90921 1.21929 0.93722 0.99587 1.06372 1.19257 0.87072 0.85026 0.93108 1.84729 1.75952 1.33975 1.34124 1.66991 1.41855 0.97845 1.16136 1.21003 0.89074 0.93188 0.91237 1.20868 1.00609 0.91698 1.03796 1.20671 0.94844 0.94347 1.10302 1.17844 0.78153 0.83686 0.84207 1.90830 1.53539 1.64954 1.31154 1.46180 1.59103 1.22894 1.08314 1.21115 0.93707 0.81979 0.99648 0.89072 1.22184 0.99577 0.98198 1.02249 1.21950 0.97728 1.00867 0.96014 1.21524 0.96838 0.98506 0.98431 1.21779 0.97951 1.00224 0.96826 1.20623 0.91558 0.95610 0.89243 1.42741 1.38610 1.38998 1.20027 1.19077 1.05742 1.09348 1.03251 0.89289 1.24692 0.97896 0.98814 0.97940 1.69704 1.23094 1.39743 1.25775 0.86517 0.77562 0.82476 0.81798 1.21088 1.21706 1.20354 0.89441 0.90361 0.89735 0.83371 0.73770 0.89561 0.90117 0.89591 0.76260 0.92348 0.91364 0.92157 0.90056 0.91270 0.92019 0.91709 0.92059 0.92159 0.95798 0.95761 0.80732 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.69 36.00 0.35 -0.67 16 2 C 0.02 0.15 5.95 -103.96 -0.62 -0.46 16 3 C -0.19 -1.64 9.73 -39.34 -0.38 -2.02 16 4 C 0.33 3.17 7.74 -16.96 -0.13 3.04 16 5 O -0.48 -3.76 13.55 -18.18 -0.25 -4.01 16 6 N -0.51 -5.44 10.28 -9.20 -0.09 -5.54 16 7 C 0.19 1.91 6.82 -82.18 -0.56 1.35 16 8 C -0.11 -0.85 9.78 36.00 0.35 -0.50 16 9 C -0.20 -1.94 5.65 -104.82 -0.59 -2.53 16 10 C 0.58 5.94 4.29 -12.43 -0.05 5.88 16 11 O -0.53 -7.20 16.76 5.29 0.09 -7.11 16 12 N -0.71 -5.84 4.53 -54.81 -0.25 -6.09 16 13 C 0.14 1.15 2.57 -67.93 -0.17 0.97 16 14 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 15 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 16 C -0.13 -1.04 4.75 -26.73 -0.13 -1.17 16 17 C -0.11 -1.21 5.10 -26.73 -0.14 -1.35 16 18 C -0.13 -1.82 5.33 -26.73 -0.14 -1.96 16 19 C 0.16 2.97 6.26 -4.04 -0.03 2.95 16 20 N -0.76 -18.23 5.41 -59.90 -0.32 -18.56 16 21 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 24 N -0.94 -29.60 13.97 55.49 0.78 -28.83 16 25 Si 0.89 22.19 27.74 -169.99 -4.71 17.47 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 29 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.08 0.68 7.19 -51.93 -0.37 0.31 16 31 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.40 1.07 9.06 45.56 0.41 1.49 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.64 7.06 -51.93 -0.37 0.27 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 2.76 8.59 -40.82 -0.35 2.41 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.36 8.39 5.53 -40.82 -0.23 8.17 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 413.21 15.07 6.23 6.23 Total: -1.00 -36.45 413.21 -8.31 -44.76 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.63 Total: 6.20 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.14 Total: -4.52 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.11 Total: -59.01 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.16 Total: -11.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.45 -8.31 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176685708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.046 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds