Wall clock time and date at job start Sat Apr 11 2020 04:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38224 * 120.42124 * 2 1 4 4 N 1.31860 * 120.76203 * 180.02562 * 3 2 1 5 5 C 1.31878 * 121.72610 * 359.70314 * 4 3 2 6 6 C 1.38181 * 120.76582 * 0.58573 * 5 4 3 7 7 C 1.50703 * 120.41980 * 179.70182 * 6 5 4 8 8 C 1.53001 * 109.47249 * 269.72364 * 7 6 5 9 9 C 1.50696 * 109.46810 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00506 * 359.97438 * 9 8 7 11 11 N 1.34787 * 119.99608 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99903 * 359.97438 * 11 9 8 13 13 C 1.46503 * 119.99782 * 179.97438 * 11 9 8 14 14 C 1.52999 * 109.46848 * 269.99651 * 13 11 9 15 15 H 1.08998 * 109.47286 * 60.00247 * 14 13 11 16 16 O 1.42897 * 109.47286 * 299.99825 * 14 13 11 17 17 C 1.53002 * 109.46691 * 180.02562 * 14 13 11 18 18 N 1.46499 * 109.46968 * 185.00218 * 17 14 13 19 19 C 1.46501 * 119.99709 * 270.00017 * 18 17 14 20 20 C 1.36934 * 120.00454 * 89.99703 * 18 17 14 21 21 H 1.08004 * 119.99917 * 342.03174 * 20 18 17 22 22 C 1.38811 * 120.00342 * 161.74548 * 20 18 17 23 23 N 1.31621 * 119.99876 * 346.03717 * 22 20 18 24 24 Si 1.86799 * 120.00096 * 166.03022 * 22 20 18 25 25 H 1.48506 * 109.46744 * 90.00539 * 24 22 20 26 26 H 1.48499 * 109.47480 * 210.00306 * 24 22 20 27 27 H 1.48498 * 109.47191 * 330.00817 * 24 22 20 28 28 C 1.38629 * 120.41557 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47237 * 269.98170 * 1 2 3 30 30 H 1.08999 * 109.46892 * 29.97553 * 1 2 3 31 31 H 1.09002 * 109.47576 * 149.97739 * 1 2 3 32 32 H 1.07997 * 119.61999 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.62187 * 180.31014 * 5 4 3 34 34 H 1.09004 * 109.47123 * 149.72032 * 7 6 5 35 35 H 1.09004 * 109.46728 * 29.72362 * 7 6 5 36 36 H 1.09005 * 109.46825 * 59.99942 * 8 7 6 37 37 H 1.08997 * 109.46895 * 299.99796 * 8 7 6 38 38 H 1.09002 * 109.47260 * 269.99767 * 12 11 9 39 39 H 1.08999 * 109.47631 * 30.00138 * 12 11 9 40 40 H 1.08999 * 109.47093 * 150.00030 * 12 11 9 41 41 H 1.08998 * 109.46975 * 149.99707 * 13 11 9 42 42 H 1.09000 * 109.47196 * 30.00069 * 13 11 9 43 43 H 0.96698 * 114.00413 * 300.00682 * 16 14 13 44 44 H 1.09002 * 109.46962 * 65.00150 * 17 14 13 45 45 H 1.09003 * 109.46872 * 304.99980 * 17 14 13 46 46 H 1.09006 * 109.47075 * 264.92772 * 19 18 17 47 47 H 1.08998 * 109.47722 * 24.92881 * 19 18 17 48 48 H 1.09004 * 109.46892 * 144.93217 * 19 18 17 49 49 H 0.97003 * 119.99674 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.79521 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 0.0048 6 6 3.5947 -1.1472 -0.0010 7 6 4.4026 -2.4194 -0.0017 8 6 4.6754 -2.8496 -1.4444 9 6 5.4826 -4.1221 -1.4449 10 8 5.8082 -4.6342 -0.3949 11 7 5.8438 -4.6905 -2.6125 12 6 5.4511 -4.0715 -3.8809 13 6 6.6291 -5.9273 -2.6131 14 6 8.1202 -5.5845 -2.6131 15 1 8.3593 -5.0028 -1.7229 16 8 8.4334 -4.8209 -3.7796 17 6 8.9403 -6.8762 -2.6144 18 7 10.3636 -6.5510 -2.4939 19 6 11.1684 -6.3281 -3.6977 20 6 10.9419 -6.4554 -1.2564 21 1 10.3237 -6.3288 -0.3798 22 6 12.3222 -6.5270 -1.1277 23 7 13.0554 -6.9562 -2.1330 24 14 13.1390 -6.0142 0.4720 25 1 13.2429 -7.1896 1.3737 26 1 14.4978 -5.4871 0.1873 27 1 12.3256 -4.9584 1.1269 28 6 2.2088 -1.1955 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6675 2.1276 -0.0004 33 1 5.3047 0.1283 0.0093 34 1 3.8462 -3.2033 0.5122 35 1 5.3488 -2.2491 0.5118 36 1 5.2318 -2.0656 -1.9582 37 1 3.7291 -3.0198 -1.9579 38 1 4.4861 -4.4689 -4.1957 39 1 5.3744 -2.9921 -3.7501 40 1 6.2005 -4.2930 -4.6407 41 1 6.3900 -6.5090 -3.5033 42 1 6.3901 -6.5098 -1.7234 43 1 8.2456 -5.2777 -4.6110 44 1 8.7682 -7.4149 -3.5462 45 1 8.6375 -7.4996 -1.7730 46 1 11.6715 -7.2545 -3.9751 47 1 10.5207 -6.0080 -4.5137 48 1 11.9120 -5.5561 -3.4997 49 1 14.0200 -7.0059 -2.0432 50 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571603473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:25:52 Heat of formation + Delta-G solvation = -33.693237 kcal Electronic energy + Delta-G solvation = -28691.966331 eV Core-core repulsion = 24719.884644 eV Total energy + Delta-G solvation = -3972.081688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68550 -39.90529 -37.52154 -35.36779 -34.84941 -34.50829 -33.92618 -31.46755 -30.81298 -29.50223 -27.67071 -26.88425 -26.24714 -25.68866 -24.43819 -23.27324 -22.02272 -21.02844 -20.57219 -19.12977 -17.36825 -17.12512 -17.02248 -16.74296 -16.20048 -16.04711 -15.20719 -15.05043 -14.69378 -14.63662 -14.46548 -14.25079 -13.67876 -13.47981 -13.37569 -13.29964 -13.17660 -13.01308 -12.87062 -12.83357 -12.71148 -12.60785 -12.25812 -11.83987 -11.77758 -11.43478 -11.27127 -11.07470 -10.83054 -10.68438 -10.50830 -10.29156 -10.07050 -9.96781 -9.84356 -9.77534 -9.72043 -9.63385 -9.09118 -8.60058 -8.33477 -6.67883 -5.65056 -3.06909 0.76995 0.95735 2.65352 2.99736 3.43921 3.47152 3.50094 3.54254 4.09680 4.32233 4.39813 4.55844 4.58287 4.63796 4.67236 4.78984 4.84280 4.87858 4.95027 5.09951 5.13531 5.14654 5.22683 5.29715 5.35072 5.37408 5.40571 5.50669 5.53248 5.63752 5.67147 5.84563 5.87085 5.90430 5.92216 5.97218 6.03282 6.05728 6.41362 6.50636 6.62402 6.79991 6.88860 7.37819 7.53968 7.68651 7.77703 7.90167 8.15807 8.21434 8.44923 9.31259 9.94820 10.41164 11.39687 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.002229 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.829565 B =12560.703748 C =13578.858451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.090 3.910 4 N -0.479 5.479 5 C 0.096 3.904 6 C -0.125 4.125 7 C -0.063 4.063 8 C -0.131 4.131 9 C 0.510 3.490 10 O -0.537 6.537 11 N -0.607 5.607 12 C 0.082 3.918 13 C 0.083 3.917 14 C 0.069 3.931 15 H 0.099 0.901 16 O -0.550 6.550 17 C 0.127 3.873 18 N -0.595 5.595 19 C 0.172 3.828 20 C -0.250 4.250 21 H 0.068 0.932 22 C -0.002 4.002 23 N -0.910 5.910 24 Si 0.903 3.097 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C -0.075 4.075 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.356 0.644 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.022 0.978 47 H -0.001 1.001 48 H 0.044 0.956 49 H 0.251 0.749 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.803 10.907 -2.965 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.068 4.068 4 N -0.187 5.187 5 C -0.061 4.061 6 C -0.127 4.127 7 C -0.101 4.101 8 C -0.171 4.171 9 C 0.298 3.702 10 O -0.414 6.414 11 N -0.340 5.340 12 C -0.061 4.061 13 C -0.040 4.040 14 C 0.006 3.994 15 H 0.117 0.883 16 O -0.353 6.353 17 C -0.002 4.002 18 N -0.317 5.317 19 C 0.027 3.973 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.200 4.200 23 N -0.556 5.556 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.101 4.101 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.201 0.799 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.777 11.857 -1.984 28.443 hybrid contribution -0.071 -0.941 0.318 0.996 sum -25.848 10.916 -1.666 28.108 Atomic orbital electron populations 1.20723 0.90224 1.03134 1.02648 1.20943 0.97569 0.94175 1.01272 1.22668 0.90031 0.97434 0.96628 1.67699 1.08314 1.31293 1.11354 1.22755 1.00510 0.87088 0.95721 1.20958 0.94498 0.96798 1.00430 1.20301 1.00572 0.93377 0.95883 1.21652 1.00782 0.96059 0.98623 1.20592 0.80123 0.86029 0.83483 1.90732 1.55658 1.64077 1.30911 1.47755 1.53836 1.26298 1.06090 1.21789 1.00023 0.98292 0.86037 1.22330 0.92767 0.85671 1.03266 1.23325 0.90466 0.96627 0.88934 0.88315 1.86654 1.88599 1.44959 1.15090 1.21277 0.86482 0.93071 0.99363 1.43770 1.03117 1.81063 1.03702 1.20747 0.92262 0.99219 0.85062 1.19214 0.90149 1.43393 0.85244 0.91386 1.24908 0.96856 1.00657 0.97536 1.70114 1.04785 1.49771 1.30963 0.86267 0.78776 0.78456 0.83152 1.21517 1.21619 1.20559 1.21428 0.93440 0.98249 0.97005 0.90879 0.91152 0.91295 0.83022 0.82637 0.89875 0.89454 0.88683 0.89141 0.93156 0.91295 0.90367 0.90753 0.89202 0.79882 0.94351 0.92705 0.95965 0.98260 0.93723 0.93895 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.04 36.00 0.36 -0.14 16 2 C -0.14 -1.02 5.90 -104.49 -0.62 -1.64 16 3 C 0.09 0.77 10.86 -17.54 -0.19 0.58 16 4 N -0.48 -5.20 10.36 -13.25 -0.14 -5.34 16 5 C 0.10 0.96 10.86 -17.55 -0.19 0.77 16 6 C -0.12 -1.13 5.15 -104.48 -0.54 -1.67 16 7 C -0.06 -0.61 4.66 -27.88 -0.13 -0.74 16 8 C -0.13 -1.22 4.23 -27.88 -0.12 -1.34 16 9 C 0.51 6.83 7.67 -10.98 -0.08 6.75 16 10 O -0.54 -9.43 15.56 5.56 0.09 -9.34 16 11 N -0.61 -7.40 2.80 -181.57 -0.51 -7.91 16 12 C 0.08 0.69 9.98 59.84 0.60 1.29 16 13 C 0.08 1.12 5.10 -4.04 -0.02 1.10 16 14 C 0.07 1.22 3.48 -26.73 -0.09 1.12 16 15 H 0.10 2.16 8.14 -51.93 -0.42 1.74 16 16 O -0.55 -9.22 10.98 -35.23 -0.39 -9.60 16 17 C 0.13 2.55 5.30 -4.04 -0.02 2.53 16 18 N -0.59 -15.27 2.89 -181.11 -0.52 -15.79 16 19 C 0.17 4.35 8.74 59.85 0.52 4.87 16 20 C -0.25 -7.16 9.70 -15.06 -0.15 -7.30 16 21 H 0.07 1.93 7.87 -52.48 -0.41 1.52 16 22 C 0.00 -0.06 5.10 -17.43 -0.09 -0.15 16 23 N -0.91 -27.36 10.49 55.49 0.58 -26.78 16 24 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 28 C -0.08 -0.59 9.55 -39.27 -0.37 -0.97 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 37 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 40 H 0.08 0.65 6.88 -51.93 -0.36 0.29 16 41 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 43 H 0.36 4.56 8.79 45.56 0.40 4.96 16 44 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 45 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 46 H 0.02 0.60 7.47 -51.93 -0.39 0.21 16 47 H 0.00 -0.02 7.22 -51.93 -0.37 -0.40 16 48 H 0.04 1.25 7.03 -51.93 -0.37 0.88 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -36.00 408.30 -8.52 -44.52 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.63 Total: 1.20 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.13 Total: 5.07 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.59 Total: -55.82 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.30 Total: -18.94 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.00 -8.52 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571603473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.831 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds