Wall clock time and date at job start Sat Apr 11 2020 04:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.91461 * 2 1 4 4 O 1.21283 * 119.99981 * 236.03503 * 3 2 1 5 5 N 1.34771 * 119.99967 * 56.03148 * 3 2 1 6 6 C 1.46505 * 119.99855 * 179.72685 * 5 3 2 7 7 C 1.53002 * 109.47156 * 180.27783 * 6 5 3 8 8 N 1.46900 * 109.46774 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99432 * 170.00079 * 8 7 6 10 10 C 1.50710 * 109.47225 * 283.94008 * 9 8 7 11 11 O 1.21295 * 119.99464 * 4.47738 * 10 9 8 12 12 N 1.34769 * 120.00294 * 184.47330 * 10 9 8 13 13 C 1.37095 * 120.00528 * 180.02562 * 12 10 9 14 14 H 1.08007 * 119.99576 * 359.97438 * 13 12 10 15 15 C 1.38943 * 120.00575 * 179.97438 * 13 12 10 16 16 N 1.31417 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00252 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47364 * 119.99794 * 17 15 13 20 20 H 1.48501 * 109.47593 * 240.00336 * 17 15 13 21 21 C 1.46895 * 111.00535 * 293.95088 * 8 7 6 22 22 C 1.52998 * 117.50069 * 247.86789 * 21 8 7 23 23 C 1.52994 * 117.50264 * 179.20708 * 21 8 7 24 24 C 1.54634 * 111.07029 * 123.98881 * 2 1 3 25 25 C 1.51100 * 104.72190 * 142.67721 * 24 2 1 26 26 C 1.30527 * 111.11026 * 343.56655 * 25 24 2 27 27 C 1.51108 * 111.09865 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.47161 * 60.69692 * 1 2 3 29 29 H 1.08994 * 109.47375 * 180.70368 * 1 2 3 30 30 H 1.09003 * 109.47066 * 300.70766 * 1 2 3 31 31 H 0.96992 * 120.00283 * 0.02562 * 5 3 2 32 32 H 1.09002 * 109.46848 * 300.27729 * 6 5 3 33 33 H 1.08997 * 109.47149 * 60.27471 * 6 5 3 34 34 H 1.09001 * 109.46768 * 300.00050 * 7 6 5 35 35 H 1.08998 * 109.46883 * 59.99551 * 7 6 5 36 36 H 1.08993 * 109.47452 * 43.94301 * 9 8 7 37 37 H 1.09004 * 109.47167 * 163.94598 * 9 8 7 38 38 H 0.97003 * 119.99772 * 0.02562 * 12 10 9 39 39 H 0.97000 * 119.99738 * 179.97438 * 16 15 13 40 40 H 1.09004 * 115.54538 * 33.53463 * 21 8 7 41 41 H 1.08997 * 117.50239 * 359.97438 * 22 21 8 42 42 H 1.08999 * 117.49887 * 145.01652 * 22 21 8 43 43 H 1.09003 * 117.50022 * 214.98671 * 23 21 8 44 44 H 1.09000 * 117.49841 * 359.97438 * 23 21 8 45 45 H 1.08996 * 110.38846 * 261.49011 * 24 2 1 46 46 H 1.09001 * 110.38419 * 23.86750 * 24 2 1 47 47 H 1.08001 * 124.44467 * 163.58139 * 25 24 2 48 48 H 1.07993 * 124.45098 * 180.02562 * 26 25 24 49 49 H 1.08999 * 110.38187 * 257.62574 * 27 26 25 50 50 H 1.08996 * 110.47930 * 135.29707 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4077 0.0000 4 8 2.8326 1.7647 -0.8711 5 7 1.6993 2.2700 0.9680 6 6 2.2270 3.6367 0.9713 7 6 1.6606 4.3992 2.1708 8 7 2.1902 5.7693 2.1745 9 6 1.4931 6.6004 3.1651 10 6 0.1332 6.9779 2.6364 11 8 -0.2529 6.5266 1.5788 12 7 -0.6539 7.8166 3.3388 13 6 -1.8912 8.1596 2.8582 14 1 -2.2350 7.7578 1.9164 15 6 -2.7028 9.0239 3.5825 16 7 -2.2847 9.5123 4.7286 17 14 -4.3884 9.4917 2.9273 18 1 -4.6204 8.8119 1.6275 19 1 -5.4309 9.0717 3.8979 20 1 -4.4543 10.9628 2.7356 21 6 3.6400 5.7729 2.4112 22 6 4.1385 6.3599 3.7332 23 6 4.3501 7.1279 2.4262 24 6 2.0859 -0.8067 1.1964 25 6 3.3084 -1.5081 0.6518 26 6 3.3080 -1.5079 -0.6535 27 6 2.0847 -0.8069 -1.1970 28 1 -0.3634 0.5030 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5248 0.8836 31 1 1.0881 1.9844 1.6648 32 1 3.3144 3.6061 1.0408 33 1 1.9359 4.1409 0.0499 34 1 0.5732 4.4296 2.1014 35 1 1.9518 3.8949 3.0922 36 1 1.3796 6.0409 4.0935 37 1 2.0730 7.5039 3.3540 38 1 -0.3449 8.1777 4.1844 39 1 -2.8512 10.1160 5.2341 40 1 4.1854 4.9233 2.0002 41 1 3.3909 6.7439 4.4271 42 1 5.0122 5.8967 4.1918 43 1 5.3629 7.1699 2.0253 44 1 3.7416 8.0169 2.2599 45 1 2.3635 -0.1366 2.0100 46 1 1.3505 -1.5353 1.5376 47 1 4.0810 -1.9515 1.2623 48 1 4.0801 -1.9514 -1.2647 49 1 1.3495 -1.5358 -1.5378 50 1 2.3596 -0.1366 -2.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663753441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:44 Heat of formation + Delta-G solvation = -18.230194 kcal Electronic energy + Delta-G solvation = -29073.505673 eV Core-core repulsion = 25102.094513 eV Total energy + Delta-G solvation = -3971.411160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70661 -39.35805 -37.81658 -37.46278 -35.30591 -34.03167 -33.23904 -32.03226 -31.25252 -29.32011 -28.39891 -26.48677 -25.79784 -24.35031 -23.33888 -22.31089 -22.04237 -20.32816 -19.56131 -19.13913 -18.79330 -17.82967 -17.22521 -16.79617 -16.25845 -15.91445 -15.49064 -15.24287 -15.04928 -14.60106 -14.25138 -14.10293 -13.99126 -13.70121 -13.38850 -13.12541 -12.98134 -12.84931 -12.59199 -12.50779 -12.42003 -12.33210 -11.94836 -11.54165 -11.52051 -11.42747 -11.41027 -11.29134 -11.13765 -10.99717 -10.92346 -10.64352 -10.35674 -10.26731 -10.23408 -9.81365 -9.51509 -9.16371 -9.00184 -8.44650 -7.98058 -7.83185 -6.43116 -3.83840 2.03531 2.60423 3.00105 3.15101 3.25931 3.33010 3.77105 3.88784 4.03354 4.13864 4.23279 4.33603 4.51522 4.77929 4.82894 4.93838 4.96818 4.97866 5.04230 5.12318 5.19275 5.22972 5.30601 5.33791 5.38475 5.45265 5.52673 5.55798 5.62852 5.64402 5.69277 5.71956 5.75137 5.84908 5.89839 5.94988 6.01198 6.13867 6.16878 6.20551 6.25312 6.28254 6.42702 6.63739 7.14155 7.28071 7.46422 7.54167 8.04914 8.19766 8.60196 9.17062 9.52942 10.04664 10.74706 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002561 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.880397 B =10929.239085 C =12619.618256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C 0.530 3.470 4 O -0.536 6.536 5 N -0.724 5.724 6 C 0.126 3.874 7 C 0.052 3.948 8 N -0.477 5.477 9 C 0.042 3.958 10 C 0.443 3.557 11 O -0.575 6.575 12 N -0.565 5.565 13 C -0.297 4.297 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.020 3.980 22 C -0.225 4.225 23 C -0.171 4.171 24 C -0.086 4.086 25 C -0.179 4.179 26 C -0.152 4.152 27 C -0.085 4.085 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.082 0.918 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -18.624 -1.659 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C 0.315 3.685 4 O -0.412 6.412 5 N -0.376 5.376 6 C 0.003 3.997 7 C -0.076 4.076 8 N -0.199 5.199 9 C -0.089 4.089 10 C 0.228 3.772 11 O -0.459 6.459 12 N -0.202 5.202 13 C -0.426 4.426 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.090 4.090 22 C -0.264 4.264 23 C -0.209 4.209 24 C -0.123 4.123 25 C -0.197 4.197 26 C -0.169 4.169 27 C -0.123 4.123 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.100 0.900 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.995 -18.309 -3.362 21.620 hybrid contribution -0.658 0.209 1.568 1.713 sum 10.337 -18.100 -1.794 20.921 Atomic orbital electron populations 1.21798 0.91568 1.02950 1.03106 1.21640 0.97116 0.92366 0.98111 1.20165 0.80742 0.86460 0.81098 1.90683 1.35384 1.78325 1.36845 1.45877 1.49375 1.12785 1.29561 1.21309 0.97873 0.80440 1.00107 1.22231 1.02115 0.87805 0.95495 1.61216 1.00205 1.10085 1.48371 1.21994 0.95673 0.98136 0.93104 1.19746 0.86322 0.84183 0.86917 1.90522 1.74725 1.57151 1.23485 1.41863 1.15689 1.41106 1.21564 1.19733 0.91390 1.25103 1.06402 0.87880 1.25254 1.00164 0.96881 0.95694 1.69621 1.38271 1.32782 1.13694 0.85814 0.81404 0.78270 0.78949 1.19219 1.20798 1.20747 1.22797 0.89037 0.97961 0.99203 1.23628 1.04113 1.06438 0.92232 1.23081 1.01383 0.96221 1.00238 1.21431 0.96177 0.98118 0.96572 1.23188 0.98518 1.01633 0.96322 1.23253 0.98158 0.99329 0.96200 1.21372 0.95457 0.97865 0.97569 0.91546 0.91222 0.91694 0.76689 0.91907 0.90087 0.88345 0.94881 0.92809 0.88942 0.77565 0.91946 0.86222 0.88165 0.89052 0.88568 0.88241 0.90849 0.89517 0.85790 0.85773 0.89956 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.36 37.16 0.31 -0.77 16 2 C -0.09 -0.85 0.84 -153.93 -0.13 -0.98 16 3 C 0.53 6.88 6.51 -10.99 -0.07 6.81 16 4 O -0.54 -9.05 15.53 5.55 0.09 -8.96 16 5 N -0.72 -8.60 5.39 -60.29 -0.32 -8.93 16 6 C 0.13 1.76 5.67 -4.04 -0.02 1.74 16 7 C 0.05 0.75 4.68 -3.82 -0.02 0.73 16 8 N -0.48 -7.66 4.31 -228.08 -0.98 -8.64 16 9 C 0.04 0.72 4.12 -4.97 -0.02 0.70 16 10 C 0.44 10.18 7.52 -10.98 -0.08 10.10 16 11 O -0.58 -15.14 14.62 5.54 0.08 -15.06 16 12 N -0.57 -14.02 5.29 -10.96 -0.06 -14.08 16 13 C -0.30 -8.14 9.68 -14.94 -0.14 -8.29 16 14 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 17 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.02 0.26 5.83 -67.72 -0.39 -0.14 16 22 C -0.22 -2.58 9.57 -26.70 -0.26 -2.84 16 23 C -0.17 -2.10 9.90 -26.70 -0.26 -2.36 16 24 C -0.09 -0.69 5.93 -26.83 -0.16 -0.85 16 25 C -0.18 -1.54 10.77 -35.70 -0.38 -1.92 16 26 C -0.15 -1.39 10.78 -35.69 -0.38 -1.77 16 27 C -0.09 -0.82 5.72 -26.82 -0.15 -0.97 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.06 0.47 7.46 -51.93 -0.39 0.08 16 31 H 0.40 3.79 7.75 -40.82 -0.32 3.47 16 32 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.69 6.60 -51.93 -0.34 1.35 16 35 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 37 H 0.09 1.49 5.52 -51.93 -0.29 1.20 16 38 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 40 H 0.12 1.43 6.34 -51.93 -0.33 1.10 16 41 H 0.10 1.20 6.06 -51.93 -0.31 0.88 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.36 7.41 -51.93 -0.38 0.97 16 45 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 46 H 0.09 0.55 7.88 -51.93 -0.41 0.14 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 50 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -32.79 400.71 -9.63 -42.43 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -7.90 Total: 15.23 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.27 Total: -0.34 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.64 Total: -55.19 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.17 Total: -24.02 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.79 -9.63 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663753441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.197 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds