Wall clock time and date at job start Sat Apr 11 2020 04:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 110.91461 * 2 1 4 4 O 1.21283 * 119.99981 * 236.03503 * 3 2 1 5 5 N 1.34771 * 119.99967 * 56.03148 * 3 2 1 6 6 C 1.46505 * 119.99855 * 179.72685 * 5 3 2 7 7 C 1.53002 * 109.47156 * 180.27783 * 6 5 3 8 8 N 1.46900 * 109.46774 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99432 * 170.00079 * 8 7 6 10 10 C 1.50710 * 109.47225 * 283.94008 * 9 8 7 11 11 O 1.21295 * 119.99464 * 4.47738 * 10 9 8 12 12 N 1.34769 * 120.00294 * 184.47330 * 10 9 8 13 13 C 1.37095 * 120.00528 * 180.02562 * 12 10 9 14 14 H 1.08007 * 119.99576 * 359.97438 * 13 12 10 15 15 C 1.38943 * 120.00575 * 179.97438 * 13 12 10 16 16 N 1.31417 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00252 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47364 * 119.99794 * 17 15 13 20 20 H 1.48501 * 109.47593 * 240.00336 * 17 15 13 21 21 C 1.46895 * 111.00535 * 293.95088 * 8 7 6 22 22 C 1.52998 * 117.50069 * 247.86789 * 21 8 7 23 23 C 1.52994 * 117.50264 * 179.20708 * 21 8 7 24 24 C 1.54634 * 111.07029 * 123.98881 * 2 1 3 25 25 C 1.51100 * 104.72190 * 142.67721 * 24 2 1 26 26 C 1.30527 * 111.11026 * 343.56655 * 25 24 2 27 27 C 1.51108 * 111.09865 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.47161 * 60.69692 * 1 2 3 29 29 H 1.08994 * 109.47375 * 180.70368 * 1 2 3 30 30 H 1.09003 * 109.47066 * 300.70766 * 1 2 3 31 31 H 0.96992 * 120.00283 * 0.02562 * 5 3 2 32 32 H 1.09002 * 109.46848 * 300.27729 * 6 5 3 33 33 H 1.08997 * 109.47149 * 60.27471 * 6 5 3 34 34 H 1.09001 * 109.46768 * 300.00050 * 7 6 5 35 35 H 1.08998 * 109.46883 * 59.99551 * 7 6 5 36 36 H 1.08993 * 109.47452 * 43.94301 * 9 8 7 37 37 H 1.09004 * 109.47167 * 163.94598 * 9 8 7 38 38 H 0.97003 * 119.99772 * 0.02562 * 12 10 9 39 39 H 0.97000 * 119.99738 * 179.97438 * 16 15 13 40 40 H 1.09004 * 115.54538 * 33.53463 * 21 8 7 41 41 H 1.08997 * 117.50239 * 359.97438 * 22 21 8 42 42 H 1.08999 * 117.49887 * 145.01652 * 22 21 8 43 43 H 1.09003 * 117.50022 * 214.98671 * 23 21 8 44 44 H 1.09000 * 117.49841 * 359.97438 * 23 21 8 45 45 H 1.08996 * 110.38846 * 261.49011 * 24 2 1 46 46 H 1.09001 * 110.38419 * 23.86750 * 24 2 1 47 47 H 1.08001 * 124.44467 * 163.58139 * 25 24 2 48 48 H 1.07993 * 124.45098 * 180.02562 * 26 25 24 49 49 H 1.08999 * 110.38187 * 257.62574 * 27 26 25 50 50 H 1.08996 * 110.47930 * 135.29707 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4077 0.0000 4 8 2.8326 1.7647 -0.8711 5 7 1.6993 2.2700 0.9680 6 6 2.2270 3.6367 0.9713 7 6 1.6606 4.3992 2.1708 8 7 2.1902 5.7693 2.1745 9 6 1.4931 6.6004 3.1651 10 6 0.1332 6.9779 2.6364 11 8 -0.2529 6.5266 1.5788 12 7 -0.6539 7.8166 3.3388 13 6 -1.8912 8.1596 2.8582 14 1 -2.2350 7.7578 1.9164 15 6 -2.7028 9.0239 3.5825 16 7 -2.2847 9.5123 4.7286 17 14 -4.3884 9.4917 2.9273 18 1 -4.6204 8.8119 1.6275 19 1 -5.4309 9.0717 3.8979 20 1 -4.4543 10.9628 2.7356 21 6 3.6400 5.7729 2.4112 22 6 4.1385 6.3599 3.7332 23 6 4.3501 7.1279 2.4262 24 6 2.0859 -0.8067 1.1964 25 6 3.3084 -1.5081 0.6518 26 6 3.3080 -1.5079 -0.6535 27 6 2.0847 -0.8069 -1.1970 28 1 -0.3634 0.5030 -0.8962 29 1 -0.3634 -1.0275 0.0126 30 1 -0.3633 0.5248 0.8836 31 1 1.0881 1.9844 1.6648 32 1 3.3144 3.6061 1.0408 33 1 1.9359 4.1409 0.0499 34 1 0.5732 4.4296 2.1014 35 1 1.9518 3.8949 3.0922 36 1 1.3796 6.0409 4.0935 37 1 2.0730 7.5039 3.3540 38 1 -0.3449 8.1777 4.1844 39 1 -2.8512 10.1160 5.2341 40 1 4.1854 4.9233 2.0002 41 1 3.3909 6.7439 4.4271 42 1 5.0122 5.8967 4.1918 43 1 5.3629 7.1699 2.0253 44 1 3.7416 8.0169 2.2599 45 1 2.3635 -0.1366 2.0100 46 1 1.3505 -1.5353 1.5376 47 1 4.0810 -1.9515 1.2623 48 1 4.0801 -1.9514 -1.2647 49 1 1.3495 -1.5358 -1.5378 50 1 2.3596 -0.1366 -2.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663753441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:43 Heat of formation + Delta-G solvation = -41.027023 kcal Electronic energy + Delta-G solvation = -29074.494218 eV Core-core repulsion = 25102.094513 eV Total energy + Delta-G solvation = -3972.399705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.62891 -40.73335 -39.17954 -38.60829 -36.43432 -35.94010 -34.43591 -33.27636 -32.79123 -30.57459 -29.12319 -27.94478 -26.51950 -26.09219 -24.37628 -23.26482 -23.07530 -21.73280 -20.71568 -20.24731 -19.80826 -19.67817 -18.33011 -17.97674 -17.40142 -16.84690 -16.82727 -16.53472 -16.23613 -16.13904 -15.67334 -15.65151 -15.28307 -14.90439 -14.45593 -14.27919 -13.99530 -13.75589 -13.65935 -13.58722 -13.48486 -13.31997 -13.15764 -13.05837 -12.97481 -12.55724 -12.40906 -12.35239 -12.24240 -12.20880 -12.11527 -12.08396 -11.73228 -11.63862 -11.47949 -11.23348 -10.85986 -10.27561 -10.15134 -9.99055 -9.79192 -9.06426 -8.45771 -5.93953 1.36339 1.37615 1.41896 1.55557 1.58882 1.95718 2.07411 2.29140 2.70086 2.98219 3.20922 3.41080 3.44956 3.62002 3.68424 3.75186 3.94621 4.00607 4.08141 4.09578 4.16930 4.27969 4.33879 4.35657 4.46283 4.47301 4.51286 4.67493 4.76278 4.80154 4.81758 4.84222 4.90013 4.92251 4.97238 5.01204 5.03634 5.09296 5.13058 5.26278 5.26758 5.36128 5.42164 5.63472 5.84088 5.98352 6.05830 6.15907 6.49439 6.61732 7.14552 7.19583 7.57799 8.13837 8.71791 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002561 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.880397 B =10929.239085 C =12619.618256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C 0.524 3.476 4 O -0.582 6.582 5 N -0.715 5.715 6 C 0.139 3.861 7 C 0.062 3.938 8 N -0.503 5.503 9 C 0.058 3.942 10 C 0.442 3.558 11 O -0.613 6.613 12 N -0.575 5.575 13 C -0.328 4.328 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.990 3.010 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.273 1.273 21 C 0.007 3.993 22 C -0.205 4.205 23 C -0.177 4.177 24 C -0.083 4.083 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.088 4.088 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.140 0.860 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -19.893 0.187 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C 0.312 3.688 4 O -0.461 6.461 5 N -0.367 5.367 6 C 0.015 3.985 7 C -0.066 4.066 8 N -0.225 5.225 9 C -0.072 4.072 10 C 0.229 3.771 11 O -0.499 6.499 12 N -0.212 5.212 13 C -0.458 4.458 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.814 3.186 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.102 4.102 22 C -0.244 4.244 23 C -0.215 4.215 24 C -0.120 4.120 25 C -0.196 4.196 26 C -0.189 4.189 27 C -0.125 4.125 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.249 0.751 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.158 0.842 48 H 0.149 0.851 49 H 0.119 0.881 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.466 -19.586 -1.470 22.743 hybrid contribution -0.748 0.603 0.954 1.353 sum 10.718 -18.983 -0.517 21.806 Atomic orbital electron populations 1.21832 0.90158 1.04483 1.02804 1.21668 0.98073 0.90019 0.99162 1.20887 0.79924 0.87795 0.80211 1.90661 1.37544 1.79398 1.38509 1.45795 1.49242 1.11828 1.29810 1.21027 0.98135 0.81157 0.98199 1.22080 1.00142 0.87645 0.96777 1.61098 1.02067 1.10696 1.48673 1.21799 0.92248 0.99414 0.93783 1.20784 0.87877 0.82463 0.86014 1.90498 1.76059 1.58120 1.25224 1.41920 1.15448 1.41909 1.21972 1.19648 0.93193 1.26668 1.06267 0.90457 1.25993 1.03238 0.96236 0.95795 1.69676 1.39460 1.32845 1.14187 0.84909 0.77378 0.78119 0.78172 1.19917 1.19493 1.19802 1.22860 0.87062 0.98977 1.01252 1.23662 1.04488 1.04927 0.91334 1.23146 1.01954 0.95055 1.01309 1.21490 0.96509 0.98338 0.95649 1.23450 0.98910 1.00972 0.96251 1.23388 0.98461 1.00212 0.96834 1.21397 0.96458 0.97798 0.96828 0.92960 0.88787 0.90926 0.75088 0.91251 0.93827 0.91421 0.91997 0.90455 0.87558 0.77082 0.91365 0.85012 0.88471 0.86659 0.86658 0.90067 0.90432 0.87049 0.84244 0.85083 0.88089 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.36 71.98 0.60 -1.33 16 2 C -0.09 -1.56 0.84 -51.81 -0.04 -1.60 16 3 C 0.52 13.70 6.51 87.66 0.57 14.27 16 4 O -0.58 -20.40 15.53 -3.04 -0.05 -20.45 16 5 N -0.71 -16.80 5.39 -463.05 -2.50 -19.30 16 6 C 0.14 3.93 5.67 86.38 0.49 4.42 16 7 C 0.06 1.76 4.68 86.30 0.40 2.17 16 8 N -0.50 -15.88 4.31 -875.52 -3.78 -19.66 16 9 C 0.06 1.97 4.12 85.56 0.35 2.32 16 10 C 0.44 20.68 7.52 87.66 0.66 21.34 16 11 O -0.61 -33.52 14.62 -3.08 -0.04 -33.57 16 12 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 13 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 14 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 15 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 16 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 17 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 C 0.01 0.17 5.83 44.91 0.26 0.44 16 22 C -0.21 -4.09 9.57 30.62 0.29 -3.80 16 23 C -0.18 -4.01 9.90 30.62 0.30 -3.71 16 24 C -0.08 -1.12 5.93 30.53 0.18 -0.94 16 25 C -0.18 -2.70 10.77 26.26 0.28 -2.42 16 26 C -0.17 -2.98 10.78 26.26 0.28 -2.69 16 27 C -0.09 -1.65 5.72 30.54 0.17 -1.48 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.09 0.90 8.11 -2.39 -0.02 0.89 16 30 H 0.07 0.92 7.46 -2.39 -0.02 0.90 16 31 H 0.41 7.39 7.75 -92.71 -0.72 6.67 16 32 H 0.07 1.87 6.40 -2.39 -0.02 1.86 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.37 6.60 -2.39 -0.02 2.36 16 35 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 37 H 0.11 3.30 5.52 -2.38 -0.01 3.29 16 38 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 39 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.13 2.88 6.34 -2.39 -0.02 2.86 16 41 H 0.10 2.03 6.06 -2.39 -0.01 2.01 16 42 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.16 7.41 -2.39 -0.02 2.14 16 45 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 46 H 0.11 1.01 7.88 -2.39 -0.02 0.99 16 47 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 48 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 49 H 0.10 1.45 7.89 -2.39 -0.02 1.43 16 50 H 0.06 1.50 7.01 -2.39 -0.02 1.48 16 Total: -1.00 -73.59 400.71 -0.07 -73.65 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.49 Total: 45.04 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.09 Total: 9.10 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -7.61 Total: -118.60 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.09 Total: -54.02 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.59 -0.07 -73.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663753441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.628 kcal (2) G-P(sol) polarization free energy of solvation -73.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds