Wall clock time and date at job start Sat Apr 11 2020 04:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.50701 * 110.43337 * 307.36128 * 3 2 1 5 5 O 1.21280 * 119.99957 * 113.05936 * 4 3 2 6 6 N 1.34777 * 120.00046 * 293.05679 * 4 3 2 7 7 C 1.47169 * 135.99766 * 4.47724 * 6 4 3 8 8 C 1.52674 * 87.96108 * 206.73980 * 7 6 4 9 9 C 1.47155 * 136.00086 * 184.85707 * 6 4 3 10 10 C 1.52554 * 113.91002 * 88.15549 * 8 7 6 11 11 C 1.53351 * 109.12693 * 190.30679 * 10 8 7 12 12 N 1.46885 * 108.75264 * 307.75832 * 11 10 8 13 13 C 1.36937 * 120.46524 * 235.65093 * 12 11 10 14 14 H 1.07996 * 120.00114 * 32.27747 * 13 12 11 15 15 C 1.38811 * 119.99917 * 212.27882 * 13 12 11 16 16 N 1.31626 * 120.00184 * 10.54907 * 15 13 12 17 17 Si 1.86800 * 120.00037 * 190.55531 * 15 13 12 18 18 H 1.48495 * 109.47253 * 59.99738 * 17 15 13 19 19 H 1.48504 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46981 * 299.99897 * 17 15 13 21 21 C 1.46893 * 119.07159 * 55.62484 * 12 11 10 22 22 C 1.52554 * 114.24685 * 220.75463 * 8 7 6 23 23 C 1.54630 * 110.48833 * 184.81741 * 3 2 1 24 24 C 1.54479 * 101.76470 * 265.98929 * 23 3 2 25 25 N 1.46758 * 105.47367 * 334.58127 * 24 23 3 26 26 C 1.34420 * 111.30333 * 17.01957 * 25 24 23 27 27 O 1.21278 * 124.94617 * 179.62455 * 26 25 24 28 28 H 1.09006 * 109.46956 * 184.96344 * 1 2 3 29 29 H 1.09001 * 109.47273 * 304.96165 * 1 2 3 30 30 H 1.08993 * 109.47019 * 64.96400 * 1 2 3 31 31 H 1.09002 * 109.47233 * 240.00023 * 2 1 3 32 32 H 1.09001 * 109.47284 * 120.00334 * 2 1 3 33 33 H 1.08995 * 113.49171 * 321.44240 * 7 6 4 34 34 H 1.09005 * 113.48491 * 91.94513 * 7 6 4 35 35 H 1.09011 * 113.48717 * 268.05456 * 9 6 4 36 36 H 1.08991 * 113.49248 * 38.56195 * 9 6 4 37 37 H 1.08993 * 109.52942 * 310.20697 * 10 8 7 38 38 H 1.09008 * 109.52348 * 70.41145 * 10 8 7 39 39 H 1.09001 * 109.59254 * 187.98358 * 11 10 8 40 40 H 1.08995 * 109.71294 * 67.61548 * 11 10 8 41 41 H 0.96998 * 120.00101 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.59366 * 184.58526 * 21 12 11 43 43 H 1.09001 * 109.71508 * 64.22216 * 21 12 11 44 44 H 1.09004 * 109.52897 * 289.73448 * 22 8 7 45 45 H 1.09000 * 109.53010 * 49.87868 * 22 8 7 46 46 H 1.09007 * 110.96501 * 24.10621 * 23 3 2 47 47 H 1.08992 * 110.96743 * 147.86759 * 23 3 2 48 48 H 1.08995 * 110.24681 * 93.58230 * 24 23 3 49 49 H 1.09004 * 110.24485 * 215.58249 * 24 23 3 50 50 H 0.97006 * 124.35249 * 197.03794 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4074 2.2242 -1.1224 5 8 0.6394 3.1292 -0.8735 6 7 1.6953 1.9177 -2.4029 7 6 2.4800 0.8811 -3.0926 8 6 2.6735 1.8687 -4.2407 9 6 1.3682 2.4764 -3.7244 10 6 3.8893 2.7757 -4.0779 11 6 3.8374 3.8811 -5.1395 12 7 3.6616 3.2605 -6.4592 13 6 4.5492 3.5157 -7.4702 14 1 5.5883 3.7019 -7.2423 15 6 4.1134 3.5350 -8.7879 16 7 2.8247 3.5161 -9.0553 17 14 5.3558 3.5876 -10.1819 18 1 6.2305 2.3897 -10.1108 19 1 4.6398 3.6006 -11.4829 20 1 6.1847 4.8137 -10.0602 21 6 2.5206 2.3618 -6.6790 22 6 2.5632 1.2452 -5.6287 23 6 3.5813 1.4717 -0.1216 24 6 4.0129 1.5411 1.3600 25 7 2.8826 2.1525 2.0689 26 6 1.7603 2.1060 1.3305 27 8 0.6807 2.5341 1.6799 28 1 -0.3633 -1.0239 0.0889 29 1 -0.3634 0.5889 0.8422 30 1 -0.3633 0.4349 -0.9311 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.4075 0.6256 -2.5803 34 1 1.8942 0.0041 -3.3680 35 1 0.4771 2.0374 -4.1733 36 1 1.3584 3.5661 -3.7450 37 1 3.8791 3.2238 -3.0844 38 1 4.8001 2.1904 -4.2053 39 1 4.7685 4.4475 -5.1232 40 1 3.0001 4.5483 -4.9349 41 1 2.5202 3.5300 -9.9762 42 1 2.5843 1.9277 -7.6768 43 1 1.5892 2.9196 -6.5820 44 1 3.4274 0.6064 -5.8109 45 1 1.6514 0.6510 -5.6898 46 1 3.9525 0.5621 -0.5939 47 1 3.9128 2.3555 -0.6664 48 1 4.2021 0.5392 1.7451 49 1 4.9035 2.1607 1.4648 50 1 2.9383 2.5407 2.9561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050551237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:26:41 Heat of formation + Delta-G solvation = -10.187476 kcal Electronic energy + Delta-G solvation = -31067.037566 eV Core-core repulsion = 27095.975164 eV Total energy + Delta-G solvation = -3971.062402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58951 -40.30265 -37.95393 -36.66287 -35.86482 -34.39838 -32.44190 -30.77647 -30.39453 -29.75305 -27.93860 -26.90546 -26.04270 -24.22932 -23.23440 -22.59463 -22.30724 -21.57872 -20.60530 -18.59988 -18.06583 -17.64149 -16.79112 -16.40564 -16.23125 -15.96750 -15.45139 -14.90864 -14.65269 -14.52312 -14.49509 -14.06425 -13.68511 -13.61263 -13.41364 -13.35720 -13.06109 -12.99119 -12.68645 -12.58681 -12.34346 -12.18573 -11.95143 -11.83408 -11.54479 -11.44693 -11.40268 -11.09214 -11.01169 -10.76485 -10.51338 -10.33548 -10.13013 -9.87786 -9.84393 -9.77411 -9.64591 -9.41360 -9.26841 -8.55691 -8.48384 -6.61959 -5.80524 -3.29673 2.32114 2.63307 2.84710 3.18938 3.36027 3.41955 3.42251 3.85499 3.97984 4.29590 4.45968 4.47562 4.54227 4.59115 4.83360 4.95916 5.04534 5.08827 5.15771 5.21219 5.31115 5.37750 5.39364 5.50050 5.52715 5.55269 5.58976 5.64076 5.67047 5.79780 5.85802 5.94794 6.04262 6.07979 6.14645 6.24734 6.42520 6.52530 6.55689 6.58847 6.64681 6.72865 6.79637 6.94386 7.32915 7.66974 7.76605 7.83768 8.05355 8.23739 8.46958 9.20925 9.81981 10.40037 11.27067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.002848 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.712579 B = 9827.869900 C =10154.695739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.560 3.440 5 O -0.520 6.520 6 N -0.639 5.639 7 C 0.099 3.901 8 C -0.075 4.075 9 C 0.116 3.884 10 C -0.105 4.105 11 C 0.146 3.854 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.904 5.904 17 Si 0.904 3.096 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.172 3.828 22 C -0.125 4.125 23 C -0.126 4.126 24 C 0.103 3.897 25 N -0.736 5.736 26 C 0.540 3.460 27 O -0.495 6.495 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.255 0.745 42 H 0.091 0.909 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -10.770 18.691 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.133 4.133 3 C -0.117 4.117 4 C 0.347 3.653 5 O -0.395 6.395 6 N -0.375 5.375 7 C -0.024 4.024 8 C -0.075 4.075 9 C -0.006 4.006 10 C -0.144 4.144 11 C 0.020 3.980 12 N -0.312 5.312 13 C -0.385 4.385 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.046 3.954 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.021 4.021 25 N -0.394 5.394 26 C 0.324 3.676 27 O -0.367 6.367 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.833 -10.002 18.960 21.515 hybrid contribution 0.690 0.112 -0.379 0.795 sum 2.522 -9.890 18.581 21.200 Atomic orbital electron populations 1.21869 0.94417 1.02056 1.03508 1.21410 0.97448 0.91114 1.03364 1.21612 0.97587 0.98411 0.94070 1.19144 0.81072 0.83887 0.81205 1.90800 1.34834 1.31300 1.82547 1.49559 1.52018 1.32064 1.03812 1.23276 0.94987 0.92657 0.91480 1.21650 0.95390 0.95654 0.94856 1.23077 0.97945 1.00679 0.78878 1.21703 0.95621 0.98060 0.99006 1.20887 0.98735 0.92392 0.86023 1.43956 1.29505 1.50275 1.07508 1.19122 0.89531 1.44022 0.85787 0.91966 1.25178 0.95678 1.00300 0.98148 1.69952 1.12316 1.53986 1.18537 0.86358 0.80574 0.78112 0.81582 1.20984 1.21634 1.20894 1.20790 0.89072 0.88520 0.97028 1.22082 1.00504 0.99900 0.93955 1.22825 0.91856 1.05114 0.96618 1.22062 0.89640 0.98827 0.91593 1.46103 1.10594 1.62290 1.20373 1.19978 0.83874 0.78135 0.85657 1.90769 1.25125 1.46270 1.74574 0.92102 0.91234 0.92410 0.90099 0.90668 0.90721 0.89874 0.89961 0.90384 0.93163 0.91704 0.92716 0.96422 0.93513 0.89099 0.96381 0.91935 0.92867 0.88134 0.89129 0.90696 0.89807 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.38 37.16 0.35 -1.46 16 2 C -0.10 -0.87 4.89 -26.73 -0.13 -1.00 16 3 C -0.11 -1.24 0.39 -155.67 -0.06 -1.30 16 4 C 0.56 8.55 5.22 -10.99 -0.06 8.50 16 5 O -0.52 -10.57 16.14 -13.97 -0.23 -10.80 16 6 N -0.64 -8.72 3.38 -185.28 -0.63 -9.35 16 7 C 0.10 1.09 6.20 -8.35 -0.05 1.03 16 8 C -0.07 -1.06 0.83 -155.15 -0.13 -1.19 16 9 C 0.12 1.76 7.57 -8.21 -0.06 1.70 16 10 C -0.10 -1.61 5.26 -26.78 -0.14 -1.75 16 11 C 0.15 2.89 6.41 -3.65 -0.02 2.87 16 12 N -0.59 -13.86 2.95 -172.18 -0.51 -14.37 16 13 C -0.25 -6.68 9.55 -15.06 -0.14 -6.82 16 14 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 15 C 0.01 0.15 5.04 -17.43 -0.09 0.07 16 16 N -0.90 -25.33 11.06 55.49 0.61 -24.71 16 17 Si 0.90 20.99 29.57 -169.99 -5.03 15.96 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.17 3.76 5.22 -3.64 -0.02 3.74 16 22 C -0.12 -2.03 5.31 -26.77 -0.14 -2.17 16 23 C -0.13 -0.97 5.09 -25.10 -0.13 -1.10 16 24 C 0.10 0.60 7.78 -3.13 -0.02 0.58 16 25 N -0.74 -6.51 6.24 -59.21 -0.37 -6.88 16 26 C 0.54 7.18 6.59 -10.86 -0.07 7.11 16 27 O -0.50 -8.84 15.64 -13.97 -0.22 -9.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 30 H 0.06 0.75 7.28 -51.93 -0.38 0.37 16 31 H 0.08 0.61 7.12 -51.93 -0.37 0.24 16 32 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 33 H 0.07 0.66 6.39 -51.93 -0.33 0.33 16 34 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.08 1.20 8.06 -51.92 -0.42 0.78 16 36 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 37 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 38 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 40 H 0.02 0.37 7.61 -51.93 -0.39 -0.03 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 46 H 0.10 0.53 6.94 -51.92 -0.36 0.17 16 47 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.41 2.93 8.96 -40.82 -0.37 2.56 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -34.46 382.61 -9.76 -44.23 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.25 Total: 0.40 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.92 Total: 8.80 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.89 Total: -55.31 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.44 Total: -19.85 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.46 -9.76 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050551237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds