Wall clock time and date at job start Sat Apr 11 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47040 * 2 1 4 4 N 1.30012 * 127.33839 * 90.02602 * 3 2 1 5 5 O 1.20657 * 112.30422 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15548 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.83109 * 179.97438 * 6 5 4 8 8 C 1.37359 * 106.34235 * 359.73752 * 6 5 4 9 9 C 1.47400 * 128.56700 * 180.25521 * 8 6 5 10 10 O 1.21605 * 120.00192 * 270.13686 * 9 8 6 11 11 N 1.34776 * 119.99645 * 90.14275 * 9 8 6 12 12 C 1.46498 * 119.99886 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47103 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47142 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47120 * 186.08986 * 14 13 12 16 16 H 1.08997 * 109.87610 * 50.48351 * 15 14 13 17 17 C 1.54322 * 109.88124 * 171.65576 * 15 14 13 18 18 C 1.55156 * 102.94306 * 141.61063 * 17 15 14 19 19 C 1.54910 * 101.58331 * 324.49715 * 18 17 15 20 20 N 1.47021 * 109.88406 * 289.46409 * 15 14 13 21 21 C 1.36940 * 125.64904 * 61.60773 * 20 15 14 22 22 H 1.08003 * 119.99566 * 307.12829 * 21 20 15 23 23 C 1.38808 * 120.00129 * 127.13030 * 21 20 15 24 24 N 1.31619 * 119.99591 * 172.04822 * 23 21 20 25 25 Si 1.86799 * 120.00113 * 352.05039 * 23 21 20 26 26 H 1.48490 * 109.47253 * 93.98617 * 25 23 21 27 27 H 1.48498 * 109.46996 * 213.99129 * 25 23 21 28 28 H 1.48504 * 109.46938 * 333.98768 * 25 23 21 29 29 H 1.08993 * 109.47142 * 60.00456 * 1 2 3 30 30 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46962 * 299.99803 * 1 2 3 32 32 H 1.09002 * 109.47164 * 239.99440 * 2 1 3 33 33 H 1.09006 * 109.47130 * 119.99909 * 2 1 3 34 34 H 1.09001 * 109.46847 * 359.97438 * 7 6 5 35 35 H 1.09003 * 109.47202 * 119.96960 * 7 6 5 36 36 H 1.08995 * 109.47069 * 239.97546 * 7 6 5 37 37 H 0.96996 * 120.00086 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.46788 * 299.99291 * 12 11 9 39 39 H 1.09004 * 109.47067 * 59.99341 * 12 11 9 40 40 H 1.09005 * 109.46773 * 299.99365 * 13 12 11 41 41 H 1.08990 * 109.47586 * 59.99776 * 13 12 11 42 42 H 1.08998 * 109.47112 * 306.09317 * 14 13 12 43 43 H 1.09002 * 109.47100 * 66.08856 * 14 13 12 44 44 H 1.08994 * 110.72342 * 259.97153 * 17 15 14 45 45 H 1.08997 * 110.72114 * 23.24829 * 17 15 14 46 46 H 1.08996 * 111.01073 * 206.42659 * 18 17 15 47 47 H 1.09001 * 111.04190 * 82.58452 * 18 17 15 48 48 H 1.09000 * 110.37189 * 278.17287 * 19 18 17 49 49 H 1.08998 * 110.37275 * 155.84557 * 19 18 17 50 50 H 0.97008 * 119.99540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6843 3.2626 0.7207 6 6 2.7465 3.4406 -0.6009 7 6 3.1867 4.6869 -1.3248 8 6 2.3346 2.2602 -1.1697 9 6 2.2211 1.9193 -2.5993 10 8 1.1815 2.1299 -3.1939 11 7 3.2697 1.3743 -3.2473 12 6 3.1571 1.0360 -4.6682 13 6 4.4780 0.4375 -5.1562 14 6 4.3603 0.0836 -6.6401 15 6 5.6238 -0.6520 -7.0907 16 1 5.8395 -1.4719 -6.4056 17 6 5.4318 -1.1965 -8.5219 18 6 6.8243 -0.9725 -9.1686 19 6 7.2619 0.3601 -8.5111 20 7 6.7594 0.2810 -7.1273 21 6 7.2661 0.9640 -6.0540 22 1 6.6111 1.5585 -5.4342 23 6 8.6214 0.8924 -5.7626 24 7 9.1362 1.6675 -4.8317 25 14 9.7145 -0.3040 -6.6917 26 1 10.3392 0.3904 -7.8461 27 1 10.7760 -0.8109 -5.7853 28 1 8.8972 -1.4427 -7.1822 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.4575 5.4528 -0.5980 35 1 4.0498 4.4582 -1.9501 36 1 2.3715 5.0512 -1.9498 37 1 4.0990 1.2066 -2.7730 38 1 2.3558 0.3100 -4.8065 39 1 2.9338 1.9370 -5.2396 40 1 5.2790 1.1638 -5.0179 41 1 4.7017 -0.4633 -4.5849 42 1 3.4923 -0.5577 -6.7929 43 1 4.2441 0.9971 -7.2233 44 1 5.1826 -2.2573 -8.5008 45 1 4.6654 -0.6297 -9.0505 46 1 6.7402 -0.8654 -10.2500 47 1 7.5101 -1.7793 -8.9102 48 1 6.8110 1.2056 -9.0306 49 1 8.3484 0.4467 -8.5157 50 1 10.0834 1.6176 -4.6284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663123935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:27:05 Heat of formation + Delta-G solvation = 7.619979 kcal Electronic energy + Delta-G solvation = -29318.081666 eV Core-core repulsion = 25347.791453 eV Total energy + Delta-G solvation = -3970.290212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.96770 -40.73382 -39.60371 -36.65795 -36.36327 -34.73450 -34.58251 -33.76601 -32.38954 -31.68749 -30.06608 -28.90501 -26.74132 -26.19080 -25.43162 -24.41649 -22.82677 -21.89208 -21.59686 -20.95012 -20.74362 -19.07510 -18.89414 -18.69937 -17.81658 -17.44997 -17.03921 -16.63852 -16.17725 -15.81585 -15.56618 -15.30150 -14.96750 -14.85133 -14.68091 -14.30544 -14.19546 -14.06682 -13.94749 -13.75924 -13.55716 -13.52713 -13.38761 -13.03152 -12.94693 -12.63746 -12.54712 -12.45715 -12.40140 -12.12347 -11.91236 -11.87498 -11.61646 -11.58326 -11.34647 -11.11578 -11.09709 -11.04373 -10.60517 -10.46532 -10.19574 -8.38697 -8.03278 -5.74930 0.22643 0.79250 1.24007 1.32792 1.40762 1.53330 1.74307 2.24057 2.45701 2.99706 3.14745 3.18732 3.46750 3.68632 3.86035 3.91673 4.06219 4.06818 4.18398 4.20539 4.21613 4.27561 4.28283 4.35342 4.50315 4.52448 4.60076 4.64770 4.74853 4.81358 4.82489 4.86490 4.87951 4.94333 4.98544 5.01434 5.04093 5.06305 5.18633 5.20145 5.22838 5.31722 5.39793 5.46579 5.57877 5.69451 6.05480 6.34913 6.47595 6.99001 7.00264 7.12038 7.59024 8.37682 9.02835 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.002778 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.197540 B =10077.215927 C =11034.393262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C 0.057 3.943 4 N -0.374 5.374 5 O 0.091 5.909 6 C 0.034 3.966 7 C -0.084 4.084 8 C -0.279 4.279 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.130 4.130 14 C -0.106 4.106 15 C 0.146 3.854 16 H 0.027 0.973 17 C -0.115 4.115 18 C -0.131 4.131 19 C 0.108 3.892 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.011 4.011 24 N -0.949 5.949 25 Si 0.941 3.059 26 H -0.288 1.288 27 H -0.313 1.313 28 H -0.250 1.250 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.410 0.590 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.032 0.968 49 H 0.017 0.983 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.174 -2.666 3.119 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.105 4.105 4 N -0.082 5.082 5 O 0.032 5.968 6 C -0.030 4.030 7 C -0.140 4.140 8 C -0.286 4.286 9 C 0.392 3.608 10 O -0.444 6.444 11 N -0.355 5.355 12 C 0.007 3.993 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.041 3.959 16 H 0.045 0.955 17 C -0.153 4.153 18 C -0.170 4.170 19 C -0.016 4.016 20 N -0.346 5.346 21 C -0.365 4.365 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.593 5.593 25 Si 0.771 3.229 26 H -0.215 1.215 27 H -0.242 1.242 28 H -0.174 1.174 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.035 0.965 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.783 -2.602 4.138 15.570 hybrid contribution 1.576 -0.234 -0.576 1.695 sum -13.206 -2.836 3.562 13.969 Atomic orbital electron populations 1.21688 0.92839 1.03678 1.01711 1.20152 0.97333 0.86260 1.05019 1.25149 0.99719 0.99576 0.86103 1.73568 1.17664 0.93063 1.23866 1.84515 1.62791 1.26538 1.22986 1.25182 0.96359 0.98102 0.83327 1.20711 1.03361 0.90049 0.99918 1.21907 1.15166 0.96616 0.94914 1.16900 0.83166 0.76653 0.84123 1.90781 1.30061 1.54993 1.68587 1.46056 1.15555 1.61787 1.12057 1.21443 0.98629 0.99892 0.79306 1.21979 0.95897 1.01529 0.97294 1.21768 0.98070 1.00310 0.94376 1.21327 0.87770 0.90965 0.95886 0.95457 1.22582 0.96682 1.01691 0.94371 1.22768 0.97472 0.96305 1.00406 1.21996 0.95993 0.96763 0.86837 1.44755 1.36940 1.49956 1.02999 1.18649 0.91722 1.21656 1.04480 0.91507 1.26450 0.99736 0.98193 0.96442 1.69881 1.13101 1.41347 1.34945 0.85781 0.78117 0.81692 0.77329 1.21476 1.24152 1.17369 0.93647 0.89157 0.92570 0.89012 0.88105 0.86606 0.88059 0.87940 0.75394 0.90969 0.92287 0.90901 0.92179 0.90185 0.92910 0.89471 0.89742 0.88711 0.92621 0.94998 0.96492 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 71.98 0.71 -1.86 16 2 C -0.05 -0.99 6.54 29.85 0.20 -0.80 16 3 C 0.06 1.46 6.84 45.16 0.31 1.77 16 4 N -0.37 -10.08 12.01 -44.78 -0.54 -10.62 16 5 O 0.09 2.28 11.06 76.94 0.85 3.13 16 6 C 0.03 0.79 7.55 25.48 0.19 0.98 16 7 C -0.08 -1.37 10.33 71.24 0.74 -0.64 16 8 C -0.28 -7.42 6.24 -18.74 -0.12 -7.54 16 9 C 0.61 17.71 7.63 86.66 0.66 18.37 16 10 O -0.56 -19.93 17.11 -4.05 -0.07 -20.00 16 11 N -0.70 -19.09 5.55 -466.39 -2.59 -21.68 16 12 C 0.13 3.60 5.67 86.38 0.49 4.09 16 13 C -0.13 -4.04 4.86 30.60 0.15 -3.89 16 14 C -0.11 -3.14 4.69 30.59 0.14 -3.00 16 15 C 0.15 5.01 3.21 45.34 0.15 5.16 16 16 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 17 C -0.12 -3.07 6.47 31.78 0.21 -2.87 16 18 C -0.13 -3.92 7.08 31.99 0.23 -3.69 16 19 C 0.11 4.24 6.19 86.85 0.54 4.77 16 20 N -0.62 -26.85 2.38 -668.27 -1.59 -28.44 16 21 C -0.24 -12.24 9.35 84.03 0.79 -11.45 16 22 H 0.07 3.70 5.18 -2.91 -0.02 3.69 16 23 C -0.01 -0.61 5.50 84.86 0.47 -0.14 16 24 N -0.95 -56.45 13.97 21.65 0.30 -56.15 16 25 Si 0.94 45.27 25.12 68.60 1.72 46.99 16 26 H -0.29 -13.68 7.00 99.48 0.70 -12.98 16 27 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 28 H -0.25 -11.31 6.44 99.48 0.64 -10.66 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 10.58 8.46 -92.71 -0.78 9.79 16 38 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.07 2.87 4.50 -2.38 -0.01 2.85 16 41 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 1.96 7.85 -2.39 -0.02 1.94 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 1.75 7.54 -2.39 -0.02 1.74 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.02 0.73 4.62 -2.39 -0.01 0.72 16 50 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -68.59 400.62 4.01 -64.57 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.09 Total: 22.94 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.84 Total: -0.74 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.42 Total: -116.90 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.78 Total: -16.87 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.72 Total: 46.99 kcal Total: -68.59 4.01 -64.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663123935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.194 kcal (2) G-P(sol) polarization free energy of solvation -68.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds