Wall clock time and date at job start Sat Apr 11 2020 04:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.45266 * 2 1 4 4 C 1.53040 * 109.46551 * 240.02348 * 2 1 3 5 5 C 1.53113 * 109.27742 * 180.80527 * 4 2 1 6 6 C 1.53119 * 109.16430 * 57.65920 * 5 4 2 7 7 H 1.08994 * 109.50439 * 62.27739 * 6 5 4 8 8 N 1.46499 * 109.50727 * 182.40279 * 6 5 4 9 9 C 1.34769 * 119.99639 * 274.80307 * 8 6 5 10 10 O 1.21620 * 120.00669 * 359.97438 * 9 8 6 11 11 C 1.47109 * 119.99839 * 179.97438 * 9 8 6 12 12 C 1.32999 * 120.00027 * 179.97438 * 11 9 8 13 13 C 1.51401 * 136.31567 * 359.62635 * 12 11 9 14 14 C 1.53373 * 87.51847 * 206.05876 * 13 12 11 15 15 C 1.51401 * 136.31642 * 179.97438 * 12 11 9 16 16 C 1.53046 * 109.27192 * 302.34239 * 6 5 4 17 17 N 1.46845 * 109.46077 * 119.97086 * 2 1 3 18 18 C 1.46903 * 111.00155 * 305.85543 * 17 2 1 19 19 C 1.50699 * 109.47156 * 160.22125 * 18 17 2 20 20 O 1.21292 * 119.99991 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99745 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99568 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00276 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99601 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99712 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46942 * 89.99727 * 26 24 22 28 28 H 1.48502 * 109.46944 * 209.99590 * 26 24 22 29 29 H 1.48495 * 109.47076 * 329.99654 * 26 24 22 30 30 H 1.08997 * 109.47257 * 307.74284 * 1 2 3 31 31 H 1.09007 * 109.46907 * 67.74064 * 1 2 3 32 32 H 1.09000 * 109.47402 * 187.74266 * 1 2 3 33 33 H 1.09003 * 109.49996 * 300.75106 * 4 2 1 34 34 H 1.09002 * 109.49740 * 60.82506 * 4 2 1 35 35 H 1.09010 * 109.52071 * 177.56041 * 5 4 2 36 36 H 1.09001 * 109.52750 * 297.74689 * 5 4 2 37 37 H 0.97003 * 120.00142 * 94.79568 * 8 6 5 38 38 H 1.07996 * 119.99875 * 359.97438 * 11 9 8 39 39 H 1.09000 * 113.56429 * 320.64138 * 13 12 11 40 40 H 1.09003 * 113.56057 * 91.37285 * 13 12 11 41 41 H 1.09001 * 113.96624 * 220.29338 * 14 13 12 42 42 H 1.08997 * 113.71355 * 88.81101 * 14 13 12 43 43 H 1.08995 * 113.56386 * 268.63070 * 15 12 11 44 44 H 1.09009 * 113.55864 * 39.28882 * 15 12 11 45 45 H 1.08996 * 109.46410 * 299.16040 * 16 6 5 46 46 H 1.08999 * 109.45450 * 179.19430 * 16 6 5 47 47 H 1.09003 * 109.46824 * 280.21977 * 18 17 2 48 48 H 1.08997 * 109.47225 * 40.22256 * 18 17 2 49 49 H 0.96993 * 120.00278 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2354 6 6 4.0548 -1.4188 0.0468 7 1 3.7124 -2.4535 0.0596 8 7 5.5186 -1.3864 0.0959 9 6 6.2349 -2.3440 -0.5256 10 8 5.6663 -3.2352 -1.1268 11 6 7.7048 -2.3112 -0.4768 12 6 8.4118 -3.2564 -1.0897 13 6 8.1081 -4.4943 -1.9068 14 6 9.4633 -5.0477 -1.4490 15 6 9.8794 -3.5783 -1.2764 16 6 3.4864 -0.6776 1.2592 17 7 2.0192 -0.6917 1.1994 18 6 1.4372 -0.1104 2.4166 19 6 1.5512 -1.0981 3.5490 20 8 2.0670 -2.1796 3.3609 21 7 1.0800 -0.7796 4.7710 22 6 1.1842 -1.6781 5.8014 23 1 1.6435 -2.6410 5.6338 24 6 0.6980 -1.3499 7.0610 25 7 0.1387 -0.1784 7.2646 26 14 0.8393 -2.5742 8.4648 27 1 2.1242 -2.3626 9.1786 28 1 -0.2898 -2.3772 9.4090 29 1 0.7959 -3.9560 7.9226 30 1 -0.3633 0.6290 0.8126 31 1 -0.3633 0.3893 -0.9512 32 1 -0.3634 -1.0183 0.1384 33 1 1.6658 -1.7447 -1.2575 34 1 1.6889 -0.1986 -2.1399 35 1 3.9380 -1.2864 -2.1019 36 1 3.9457 0.2870 -1.2671 37 1 5.9722 -0.6757 0.5756 38 1 8.2099 -1.5195 0.0566 39 1 7.2577 -5.0649 -1.5336 40 1 8.0539 -4.3061 -2.9791 41 1 10.0139 -5.5722 -2.2299 42 1 9.4158 -5.6050 -0.5135 43 1 10.3108 -3.1390 -2.1758 44 1 10.4819 -3.3964 -0.3864 45 1 3.8402 0.3533 1.2533 46 1 3.8174 -1.1698 2.1736 47 1 1.9733 0.8026 2.6754 48 1 0.3867 0.1221 2.2418 49 1 0.6672 0.0851 4.9213 50 1 -0.2004 0.0508 8.1441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131955152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:20 Heat of formation + Delta-G solvation = -29.402757 kcal Electronic energy + Delta-G solvation = -29065.183780 eV Core-core repulsion = 25093.288142 eV Total energy + Delta-G solvation = -3971.895639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.19547 -39.31431 -38.38187 -37.52507 -34.91446 -33.90636 -32.65137 -31.73140 -31.16472 -30.43467 -27.67241 -26.40201 -26.01430 -24.58308 -23.58333 -22.94385 -21.50575 -20.53777 -19.81795 -19.07481 -18.38585 -17.81694 -17.06308 -16.42312 -16.00617 -15.74417 -15.21318 -15.12747 -14.85572 -14.55893 -14.50722 -14.17312 -13.93549 -13.87694 -13.65385 -13.26256 -13.02148 -12.72791 -12.43078 -12.28277 -12.19573 -11.99380 -11.94725 -11.80923 -11.48578 -11.38600 -11.26384 -11.05554 -10.91050 -10.83694 -10.73201 -10.60081 -10.37142 -10.25720 -10.16707 -9.66713 -9.45349 -9.41288 -8.92857 -8.44135 -7.92819 -7.83257 -6.38389 -3.78768 1.22949 3.08530 3.19783 3.28161 3.31343 3.34645 3.94392 3.97942 4.16066 4.23467 4.29713 4.49010 4.78396 4.83559 4.89227 4.96943 5.02477 5.03918 5.23257 5.24729 5.28107 5.33454 5.38649 5.42342 5.50030 5.54543 5.56771 5.61845 5.66791 5.74422 5.79088 5.89098 5.94149 5.95633 6.02236 6.05481 6.08499 6.20478 6.27614 6.28743 6.33491 6.41491 6.47150 6.56395 7.27897 7.41218 7.58096 7.58519 8.10562 8.30516 8.66488 9.22469 9.59159 10.11783 10.79558 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.002648 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.694127 B =10570.006549 C =12721.964476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.151 3.849 7 H 0.100 0.900 8 N -0.721 5.721 9 C 0.552 3.448 10 O -0.541 6.541 11 C -0.198 4.198 12 C -0.064 4.064 13 C -0.106 4.106 14 C -0.143 4.143 15 C -0.109 4.109 16 C 0.057 3.943 17 N -0.505 5.505 18 C 0.041 3.959 19 C 0.445 3.555 20 O -0.574 6.574 21 N -0.568 5.568 22 C -0.296 4.296 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.904 5.904 26 Si 0.928 3.072 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.095 0.905 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.391 0.609 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 2.568 -18.289 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.166 4.166 6 C 0.047 3.953 7 H 0.118 0.882 8 N -0.371 5.371 9 C 0.340 3.660 10 O -0.419 6.419 11 C -0.219 4.219 12 C -0.066 4.066 13 C -0.143 4.143 14 C -0.180 4.180 15 C -0.146 4.146 16 C -0.072 4.072 17 N -0.230 5.230 18 C -0.091 4.091 19 C 0.230 3.770 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.114 0.886 49 H 0.224 0.776 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.996 0.774 -18.693 22.780 hybrid contribution 0.259 1.419 1.373 1.991 sum 13.255 2.193 -17.320 21.920 Atomic orbital electron populations 1.21952 0.94282 1.03177 1.01363 1.21680 0.95588 0.95082 0.90581 0.94526 1.21565 0.94620 1.01977 0.96355 1.21963 0.96107 1.00299 0.98275 1.20922 0.78131 1.02212 0.94064 0.88179 1.45867 1.07251 1.28963 1.55003 1.18371 0.87389 0.81403 0.78801 1.90775 1.72534 1.35520 1.43091 1.21617 0.92720 1.00590 1.06951 1.23448 0.97142 0.92886 0.93089 1.22215 0.98332 0.94046 0.99696 1.22734 0.97419 0.95616 1.02268 1.22355 0.93015 0.96420 1.02778 1.22252 0.87956 0.97765 0.99195 1.61337 1.06041 1.54838 1.00790 1.21983 1.01075 0.95718 0.90278 1.19801 0.84718 0.88954 0.83560 1.90527 1.47988 1.24261 1.82910 1.41871 1.53173 1.17722 1.07772 1.19685 1.36508 0.98723 0.87644 0.87997 1.25238 0.96911 0.97101 0.98770 1.69612 1.40096 1.20781 1.24056 0.85880 0.77687 0.80533 0.80333 1.20500 1.20967 1.19423 0.92315 0.92281 0.91212 0.90593 0.91410 0.91453 0.92399 0.76844 0.85078 0.89368 0.88529 0.90461 0.89648 0.88224 0.90401 0.95467 0.88642 0.93396 0.88580 0.77601 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.59 37.15 0.32 -1.48 16 2 C 0.08 1.03 2.44 -67.73 -0.17 0.86 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -1.29 5.37 -26.65 -0.14 -1.43 16 5 C -0.13 -1.58 5.58 -26.61 -0.15 -1.73 16 6 C 0.15 2.19 2.62 -67.85 -0.18 2.01 16 7 H 0.10 1.81 7.58 -51.93 -0.39 1.42 16 8 N -0.72 -8.96 5.08 -54.91 -0.28 -9.24 16 9 C 0.55 7.58 7.73 -12.66 -0.10 7.49 16 10 O -0.54 -9.30 14.82 5.26 0.08 -9.23 16 11 C -0.20 -2.10 10.03 -37.80 -0.38 -2.48 16 12 C -0.06 -0.64 6.93 -100.49 -0.70 -1.33 16 13 C -0.11 -1.05 6.99 -27.56 -0.19 -1.24 16 14 C -0.14 -1.05 8.17 -26.19 -0.21 -1.27 16 15 C -0.11 -0.76 7.96 -27.40 -0.22 -0.98 16 16 C 0.06 0.89 4.58 -3.83 -0.02 0.87 16 17 N -0.50 -8.34 4.05 -228.12 -0.92 -9.27 16 18 C 0.04 0.72 5.31 -4.97 -0.03 0.69 16 19 C 0.44 10.49 7.49 -10.99 -0.08 10.41 16 20 O -0.57 -15.62 14.74 5.55 0.08 -15.54 16 21 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 26 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.84 8.59 -40.82 -0.35 3.49 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 1.80 6.69 -51.93 -0.35 1.46 16 47 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 48 H 0.10 1.55 5.42 -51.93 -0.28 1.27 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -33.42 400.26 -10.11 -43.52 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.26 Total: 13.47 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.48 Total: 2.42 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.54 Total: -56.92 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.16 Total: -24.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.42 -10.11 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131955152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.122 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds