Wall clock time and date at job start Sat Apr 11 2020 04:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.45266 * 2 1 4 4 C 1.53040 * 109.46551 * 240.02348 * 2 1 3 5 5 C 1.53113 * 109.27742 * 180.80527 * 4 2 1 6 6 C 1.53119 * 109.16430 * 57.65920 * 5 4 2 7 7 H 1.08994 * 109.50439 * 62.27739 * 6 5 4 8 8 N 1.46499 * 109.50727 * 182.40279 * 6 5 4 9 9 C 1.34769 * 119.99639 * 274.80307 * 8 6 5 10 10 O 1.21620 * 120.00669 * 359.97438 * 9 8 6 11 11 C 1.47109 * 119.99839 * 179.97438 * 9 8 6 12 12 C 1.32999 * 120.00027 * 179.97438 * 11 9 8 13 13 C 1.51401 * 136.31567 * 359.62635 * 12 11 9 14 14 C 1.53373 * 87.51847 * 206.05876 * 13 12 11 15 15 C 1.51401 * 136.31642 * 179.97438 * 12 11 9 16 16 C 1.53046 * 109.27192 * 302.34239 * 6 5 4 17 17 N 1.46845 * 109.46077 * 119.97086 * 2 1 3 18 18 C 1.46903 * 111.00155 * 305.85543 * 17 2 1 19 19 C 1.50699 * 109.47156 * 160.22125 * 18 17 2 20 20 O 1.21292 * 119.99991 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99745 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99568 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00276 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99601 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99712 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46942 * 89.99727 * 26 24 22 28 28 H 1.48502 * 109.46944 * 209.99590 * 26 24 22 29 29 H 1.48495 * 109.47076 * 329.99654 * 26 24 22 30 30 H 1.08997 * 109.47257 * 307.74284 * 1 2 3 31 31 H 1.09007 * 109.46907 * 67.74064 * 1 2 3 32 32 H 1.09000 * 109.47402 * 187.74266 * 1 2 3 33 33 H 1.09003 * 109.49996 * 300.75106 * 4 2 1 34 34 H 1.09002 * 109.49740 * 60.82506 * 4 2 1 35 35 H 1.09010 * 109.52071 * 177.56041 * 5 4 2 36 36 H 1.09001 * 109.52750 * 297.74689 * 5 4 2 37 37 H 0.97003 * 120.00142 * 94.79568 * 8 6 5 38 38 H 1.07996 * 119.99875 * 359.97438 * 11 9 8 39 39 H 1.09000 * 113.56429 * 320.64138 * 13 12 11 40 40 H 1.09003 * 113.56057 * 91.37285 * 13 12 11 41 41 H 1.09001 * 113.96624 * 220.29338 * 14 13 12 42 42 H 1.08997 * 113.71355 * 88.81101 * 14 13 12 43 43 H 1.08995 * 113.56386 * 268.63070 * 15 12 11 44 44 H 1.09009 * 113.55864 * 39.28882 * 15 12 11 45 45 H 1.08996 * 109.46410 * 299.16040 * 16 6 5 46 46 H 1.08999 * 109.45450 * 179.19430 * 16 6 5 47 47 H 1.09003 * 109.46824 * 280.21977 * 18 17 2 48 48 H 1.08997 * 109.47225 * 40.22256 * 18 17 2 49 49 H 0.96993 * 120.00278 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2354 6 6 4.0548 -1.4188 0.0468 7 1 3.7124 -2.4535 0.0596 8 7 5.5186 -1.3864 0.0959 9 6 6.2349 -2.3440 -0.5256 10 8 5.6663 -3.2352 -1.1268 11 6 7.7048 -2.3112 -0.4768 12 6 8.4118 -3.2564 -1.0897 13 6 8.1081 -4.4943 -1.9068 14 6 9.4633 -5.0477 -1.4490 15 6 9.8794 -3.5783 -1.2764 16 6 3.4864 -0.6776 1.2592 17 7 2.0192 -0.6917 1.1994 18 6 1.4372 -0.1104 2.4166 19 6 1.5512 -1.0981 3.5490 20 8 2.0670 -2.1796 3.3609 21 7 1.0800 -0.7796 4.7710 22 6 1.1842 -1.6781 5.8014 23 1 1.6435 -2.6410 5.6338 24 6 0.6980 -1.3499 7.0610 25 7 0.1387 -0.1784 7.2646 26 14 0.8393 -2.5742 8.4648 27 1 2.1242 -2.3626 9.1786 28 1 -0.2898 -2.3772 9.4090 29 1 0.7959 -3.9560 7.9226 30 1 -0.3633 0.6290 0.8126 31 1 -0.3633 0.3893 -0.9512 32 1 -0.3634 -1.0183 0.1384 33 1 1.6658 -1.7447 -1.2575 34 1 1.6889 -0.1986 -2.1399 35 1 3.9380 -1.2864 -2.1019 36 1 3.9457 0.2870 -1.2671 37 1 5.9722 -0.6757 0.5756 38 1 8.2099 -1.5195 0.0566 39 1 7.2577 -5.0649 -1.5336 40 1 8.0539 -4.3061 -2.9791 41 1 10.0139 -5.5722 -2.2299 42 1 9.4158 -5.6050 -0.5135 43 1 10.3108 -3.1390 -2.1758 44 1 10.4819 -3.3964 -0.3864 45 1 3.8402 0.3533 1.2533 46 1 3.8174 -1.1698 2.1736 47 1 1.9733 0.8026 2.6754 48 1 0.3867 0.1221 2.2418 49 1 0.6672 0.0851 4.9213 50 1 -0.2004 0.0508 8.1441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131955152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:19 Heat of formation + Delta-G solvation = -53.121564 kcal Electronic energy + Delta-G solvation = -29066.212305 eV Core-core repulsion = 25093.288142 eV Total energy + Delta-G solvation = -3972.924163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32588 -40.51140 -39.54480 -38.94259 -36.15561 -35.86341 -33.89665 -33.21688 -32.74255 -31.32293 -29.14066 -27.58499 -26.68758 -26.37524 -24.48757 -24.15644 -22.49723 -21.65663 -21.05368 -20.73208 -19.84330 -19.25916 -18.04211 -17.78472 -17.42471 -16.61729 -16.51270 -16.36104 -16.25750 -15.86306 -15.66428 -15.55916 -15.45503 -15.05015 -14.95361 -14.60837 -14.41523 -13.87768 -13.54260 -13.41553 -13.34815 -13.25151 -12.98449 -12.93569 -12.78850 -12.66495 -12.58165 -12.41783 -12.13781 -12.04466 -11.92335 -11.89375 -11.79179 -11.53033 -11.46166 -11.29781 -10.69904 -10.35219 -10.27257 -9.99105 -9.93139 -9.17242 -8.45662 -5.93771 0.36832 1.36921 1.40357 1.53051 2.03938 2.09423 2.29261 2.30739 2.80153 3.20995 3.35741 3.46641 3.56979 3.69778 3.81439 3.82952 3.92594 4.04760 4.15038 4.23893 4.26824 4.32593 4.40860 4.45578 4.50609 4.58555 4.60388 4.62534 4.72927 4.82032 4.83473 4.85700 4.92835 4.97290 5.02496 5.03139 5.07547 5.17085 5.25037 5.29534 5.34614 5.41014 5.41638 5.48902 5.65525 5.90964 6.09985 6.26795 6.59447 6.63369 7.15252 7.27470 7.59369 8.16585 8.71754 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.002648 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.694127 B =10570.006549 C =12721.964476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.061 0.939 4 C -0.103 4.103 5 C -0.117 4.117 6 C 0.159 3.841 7 H 0.051 0.949 8 N -0.712 5.712 9 C 0.543 3.457 10 O -0.587 6.587 11 C -0.212 4.212 12 C -0.071 4.071 13 C -0.120 4.120 14 C -0.136 4.136 15 C -0.093 4.093 16 C 0.065 3.935 17 N -0.532 5.532 18 C 0.055 3.945 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.074 0.926 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.269 1.269 29 H -0.276 1.276 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.413 0.587 38 H 0.163 0.837 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.117 0.883 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.591 4.782 -19.094 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.155 4.155 6 C 0.053 3.947 7 H 0.069 0.931 8 N -0.363 5.363 9 C 0.333 3.667 10 O -0.469 6.469 11 C -0.232 4.232 12 C -0.073 4.073 13 C -0.157 4.157 14 C -0.173 4.173 15 C -0.129 4.129 16 C -0.064 4.064 17 N -0.258 5.258 18 C -0.076 4.076 19 C 0.229 3.771 20 O -0.502 6.502 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.092 0.908 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.201 1.201 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.180 0.820 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.276 3.045 -19.491 24.351 hybrid contribution -0.152 0.662 1.565 1.706 sum 14.124 3.707 -17.927 23.121 Atomic orbital electron populations 1.21957 0.93468 1.02044 1.03138 1.21813 0.96237 0.95834 0.88877 0.92140 1.21584 0.94183 1.01060 0.97350 1.21871 0.96427 1.01054 0.96189 1.20677 0.79290 0.99601 0.95129 0.93067 1.45775 1.06488 1.29253 1.54762 1.19025 0.88932 0.80695 0.78017 1.90752 1.73664 1.37241 1.45226 1.21705 0.90613 1.02334 1.08553 1.23948 0.99512 0.92001 0.91811 1.22343 0.98674 0.94472 1.00216 1.22725 0.95622 0.96400 1.02572 1.22387 0.90755 0.95369 1.04403 1.22093 0.87849 0.98871 0.97574 1.61245 1.06534 1.56469 1.01552 1.21822 1.02880 0.94307 0.88561 1.20910 0.82614 0.89359 0.84265 1.90503 1.49401 1.26623 1.83723 1.41926 1.53831 1.17585 1.08095 1.19597 1.38308 0.98694 0.89383 0.90760 1.25979 0.95999 0.98832 1.00394 1.69665 1.39855 1.21656 1.24933 0.84979 0.78337 0.77886 0.77442 1.19588 1.19408 1.20132 0.91939 0.89406 0.93480 0.92957 0.88203 0.92439 0.89863 0.75008 0.81967 0.92805 0.87763 0.88334 0.90172 0.85945 0.88892 0.92460 0.92825 0.90976 0.86543 0.77023 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.59 71.98 0.62 -2.62 16 2 C 0.08 1.90 2.44 44.94 0.11 2.01 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.10 -2.34 5.37 30.65 0.16 -2.17 16 5 C -0.12 -2.77 5.58 30.67 0.17 -2.60 16 6 C 0.16 4.73 2.62 45.05 0.12 4.85 16 7 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 8 N -0.71 -18.03 5.08 -445.88 -2.26 -20.29 16 9 C 0.54 15.52 7.73 86.57 0.67 16.19 16 10 O -0.59 -21.76 14.82 -4.09 -0.06 -21.82 16 11 C -0.21 -4.39 10.03 23.43 0.23 -4.16 16 12 C -0.07 -1.37 6.93 -17.17 -0.12 -1.49 16 13 C -0.12 -2.42 6.99 30.05 0.21 -2.21 16 14 C -0.14 -1.82 8.17 30.95 0.25 -1.57 16 15 C -0.09 -1.05 7.96 30.16 0.24 -0.81 16 16 C 0.06 2.03 4.58 86.33 0.40 2.42 16 17 N -0.53 -17.44 4.05 -875.64 -3.55 -20.99 16 18 C 0.06 1.92 5.31 85.56 0.45 2.37 16 19 C 0.44 21.45 7.49 87.66 0.66 22.10 16 20 O -0.62 -35.42 14.74 -3.07 -0.05 -35.47 16 21 N -0.58 -29.99 5.29 -306.98 -1.62 -31.61 16 22 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 23 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 26 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 H 0.06 1.31 6.38 -2.39 -0.02 1.29 16 31 H 0.09 1.41 8.13 -2.38 -0.02 1.39 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 7.69 8.59 -92.71 -0.80 6.89 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.05 1.44 7.49 -2.39 -0.02 1.43 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 2.13 6.69 -2.39 -0.02 2.11 16 47 H 0.07 2.18 8.00 -2.39 -0.02 2.16 16 48 H 0.12 3.58 5.42 -2.39 -0.01 3.57 16 49 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -77.80 400.26 -0.35 -78.15 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.57 Total: 42.09 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.46 Total: 13.82 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -7.15 Total: -122.54 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -0.11 Total: -57.29 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -77.80 -0.35 -78.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131955152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.030 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds