Wall clock time and date at job start Sat Apr 11 2020 04:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47093 * 2 1 4 4 C 1.52995 * 109.47079 * 239.99976 * 2 1 3 5 5 C 1.50697 * 109.47457 * 175.00105 * 4 2 1 6 6 O 1.21286 * 119.99497 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00297 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99664 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.56630 * 36.97010 * 8 7 5 10 10 C 1.54859 * 110.62522 * 160.04823 * 8 7 5 11 11 C 1.55843 * 103.44731 * 118.48606 * 10 8 7 12 12 H 1.09000 * 116.12396 * 159.14624 * 11 10 8 13 13 C 1.55841 * 105.06208 * 288.17436 * 11 10 8 14 14 C 1.54856 * 103.44796 * 71.82766 * 13 11 10 15 15 C 1.55846 * 110.62434 * 274.06973 * 8 7 5 16 16 H 1.08999 * 115.56561 * 82.70159 * 15 8 7 17 17 N 1.50244 * 101.05133 * 208.57483 * 15 8 7 18 18 C 1.36929 * 130.84066 * 233.98747 * 17 15 8 19 19 H 1.07998 * 120.00201 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99806 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00442 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99733 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47468 * 120.00243 * 22 20 18 25 25 H 1.48501 * 109.46946 * 240.00254 * 22 20 18 26 26 N 1.46497 * 109.47125 * 120.00162 * 2 1 3 27 27 C 1.46764 * 124.35081 * 239.99992 * 26 2 1 28 28 C 1.54477 * 105.47629 * 196.99258 * 27 26 2 29 29 C 1.54780 * 101.69196 * 334.39030 * 28 27 26 30 30 C 1.34424 * 124.35393 * 59.97075 * 26 2 1 31 31 O 1.21282 * 124.93707 * 359.58326 * 30 26 2 32 32 H 1.08994 * 109.47263 * 59.99935 * 1 2 3 33 33 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47328 * 299.99919 * 1 2 3 35 35 H 1.09001 * 109.47135 * 294.99994 * 4 2 1 36 36 H 1.09004 * 109.47023 * 54.99638 * 4 2 1 37 37 H 0.96997 * 119.99939 * 359.97438 * 7 5 4 38 38 H 1.08995 * 110.62211 * 236.97511 * 10 8 7 39 39 H 1.09000 * 110.62248 * 359.97438 * 10 8 7 40 40 H 1.09006 * 110.62458 * 190.31700 * 13 11 10 41 41 H 1.08997 * 110.63283 * 313.17658 * 13 11 10 42 42 H 1.08997 * 110.62650 * 241.51101 * 14 13 11 43 43 H 1.09001 * 110.62607 * 118.48437 * 14 13 11 44 44 H 0.97002 * 119.99994 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.24142 * 315.99619 * 27 26 2 46 46 H 1.09007 * 110.24707 * 77.99236 * 27 26 2 47 47 H 1.09004 * 110.96545 * 92.70157 * 28 27 26 48 48 H 1.08999 * 110.96760 * 216.46494 * 28 27 26 49 49 H 1.08997 * 110.61734 * 266.39910 * 29 28 27 50 50 H 1.09005 * 110.42912 * 143.70804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 8 4.1449 -0.0204 -0.4445 7 7 4.2149 -1.1806 -2.3343 8 6 5.6750 -1.0777 -2.3956 9 1 6.1058 -1.1431 -1.3966 10 6 6.2608 -2.1742 -3.3190 11 6 6.9630 -1.3606 -4.4475 12 1 7.7316 -1.8881 -5.0124 13 6 5.8020 -0.7566 -5.2937 14 6 5.2162 0.3400 -4.3705 15 6 6.1030 0.2492 -3.0921 16 1 6.1165 1.1325 -2.4536 17 7 7.4241 -0.1504 -3.6859 18 6 8.6660 0.4143 -3.5686 19 1 8.8021 1.2989 -2.9642 20 6 9.7502 -0.1509 -4.2257 21 7 9.5846 -1.2293 -4.9619 22 14 11.4446 0.6191 -4.0651 23 1 11.3639 1.8149 -3.1883 24 1 12.3827 -0.3677 -3.4722 25 1 11.9342 1.0226 -5.4078 26 7 2.0183 -0.6906 1.1961 27 6 2.8656 -0.0713 2.2221 28 6 3.4719 -1.2466 3.0205 29 6 2.4150 -2.3553 2.7980 30 6 1.7476 -1.9729 1.4954 31 8 1.0635 -2.7138 0.8216 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.7516 -1.7715 -1.2055 36 1 1.6053 -0.2617 -2.1369 37 1 3.7326 -1.6564 -3.0284 38 1 6.9843 -2.7847 -2.7788 39 1 5.4650 -2.7948 -3.7308 40 1 6.1860 -0.3182 -6.2149 41 1 5.0524 -1.5164 -5.5149 42 1 4.1748 0.1246 -4.1314 43 1 5.3098 1.3222 -4.8337 44 1 10.3422 -1.6240 -5.4213 45 1 3.6566 0.5150 1.7544 46 1 2.2646 0.5595 2.8772 47 1 4.4397 -1.5375 2.6119 48 1 3.5556 -0.9974 4.0783 49 1 1.6890 -2.3622 3.6109 50 1 2.8977 -3.3285 2.7080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109973607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:30:18 Heat of formation + Delta-G solvation = -23.553909 kcal Electronic energy + Delta-G solvation = -30728.975939 eV Core-core repulsion = 26757.333925 eV Total energy + Delta-G solvation = -3971.642014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75709 -39.82097 -38.29519 -36.37229 -34.93464 -33.85771 -32.33253 -30.33272 -29.38203 -29.06708 -28.41277 -27.56393 -26.94929 -24.20051 -22.85329 -22.02607 -21.37062 -20.57646 -19.50809 -18.85923 -18.50493 -17.21693 -16.98059 -16.67228 -16.46424 -15.72177 -15.08908 -14.90431 -14.82230 -14.41382 -14.02687 -13.86843 -13.72743 -13.72157 -13.61541 -13.01108 -12.84427 -12.45510 -12.35568 -12.03938 -12.00764 -11.80686 -11.71996 -11.60878 -11.49261 -11.26578 -11.10425 -11.03251 -10.92246 -10.88821 -10.84460 -10.22524 -10.07201 -9.83414 -9.65571 -9.55278 -9.36407 -9.22572 -8.94315 -8.73299 -8.46663 -6.91840 -5.73595 -3.11581 2.54324 2.90246 2.98312 3.38149 3.43511 3.46105 3.50500 4.25449 4.41939 4.44711 4.67699 4.74191 4.78764 4.93905 5.07404 5.20908 5.22812 5.35060 5.38550 5.39720 5.44363 5.50252 5.54282 5.61385 5.68119 5.74552 5.78702 5.81278 5.84965 5.95373 5.97139 6.01134 6.07149 6.12662 6.32068 6.33383 6.54075 6.55549 6.60678 6.70982 6.82069 6.97333 7.00458 7.13507 7.27750 7.52133 7.75351 7.88578 8.14991 8.16482 8.56016 9.09646 9.72316 10.52927 11.36093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.003007 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.912766 B = 9309.294049 C = 9941.496652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.512 3.488 6 O -0.543 6.543 7 N -0.713 5.713 8 C 0.130 3.870 9 H 0.079 0.921 10 C -0.141 4.141 11 C 0.154 3.846 12 H 0.154 0.846 13 C -0.137 4.137 14 C -0.129 4.129 15 C 0.130 3.870 16 H 0.084 0.916 17 N -0.591 5.591 18 C -0.209 4.209 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 N -0.599 5.599 27 C 0.103 3.897 28 C -0.131 4.131 29 C -0.157 4.157 30 C 0.516 3.484 31 O -0.541 6.541 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.394 0.606 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.253 0.747 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 0.130 11.029 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 H 0.114 0.886 4 C -0.204 4.204 5 C 0.298 3.702 6 O -0.421 6.421 7 N -0.364 5.364 8 C 0.024 3.976 9 H 0.097 0.903 10 C -0.181 4.181 11 C 0.047 3.953 12 H 0.171 0.829 13 C -0.177 4.177 14 C -0.169 4.169 15 C 0.021 3.979 16 H 0.102 0.898 17 N -0.311 5.311 18 C -0.337 4.337 19 H 0.097 0.903 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 N -0.332 5.332 27 C -0.019 4.019 28 C -0.168 4.168 29 C -0.197 4.197 30 C 0.304 3.696 31 O -0.419 6.419 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.084 0.264 11.179 20.419 hybrid contribution 0.622 0.185 -0.310 0.719 sum -16.462 0.449 10.869 19.732 Atomic orbital electron populations 1.22185 0.94425 1.03677 1.02219 1.20633 0.93490 0.96377 0.82399 0.88624 1.22188 0.93588 1.04775 0.99824 1.20444 0.89431 0.78751 0.81588 1.90615 1.70284 1.42531 1.38630 1.46262 1.08497 1.55824 1.25787 1.22581 0.77174 0.98087 0.99739 0.90298 1.23280 0.98986 0.96610 0.99177 1.23759 0.92959 0.87847 0.90718 0.82894 1.23052 0.98521 0.97275 0.98828 1.22895 0.97574 0.98688 0.97753 1.23172 0.86868 0.94661 0.93203 0.89815 1.46497 1.02211 1.28907 1.53525 1.19102 0.82771 1.07390 1.24439 0.90299 1.24697 0.97950 0.98030 1.00107 1.69446 1.29452 1.22465 1.35807 0.85965 0.83911 0.78207 0.77232 1.20553 1.21773 1.21814 1.48205 1.50568 1.11927 1.22536 1.22134 0.94454 0.96021 0.89330 1.22597 0.98869 0.94385 1.00993 1.22355 0.99453 1.01085 0.96775 1.20885 0.80018 0.81648 0.87087 1.90668 1.40159 1.54973 1.56079 0.91302 0.90923 0.92274 0.87719 0.88139 0.77186 0.91741 0.92789 0.92714 0.93670 0.93099 0.93169 0.93618 0.88558 0.91876 0.89801 0.89574 0.88220 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.20 37.16 0.34 -1.17 16 2 C 0.17 1.86 2.43 -67.93 -0.16 1.69 16 3 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 4 C -0.16 -1.84 5.13 -27.89 -0.14 -1.98 16 5 C 0.51 7.44 7.69 -10.99 -0.08 7.36 16 6 O -0.54 -9.27 13.33 5.55 0.07 -9.19 16 7 N -0.71 -10.51 3.63 -51.39 -0.19 -10.70 16 8 C 0.13 2.41 3.08 -65.43 -0.20 2.21 16 9 H 0.08 1.65 7.70 -51.93 -0.40 1.25 16 10 C -0.14 -2.70 6.20 -24.23 -0.15 -2.85 16 11 C 0.15 3.46 4.72 -62.80 -0.30 3.17 16 12 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 13 C -0.14 -2.65 6.44 -24.24 -0.16 -2.81 16 14 C -0.13 -2.37 6.33 -24.23 -0.15 -2.53 16 15 C 0.13 2.70 5.35 -62.79 -0.34 2.36 16 16 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 17 N -0.59 -14.67 2.99 -145.81 -0.44 -15.11 16 18 C -0.21 -5.74 10.59 -15.06 -0.16 -5.90 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.92 -26.15 10.46 55.49 0.58 -25.57 16 22 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 N -0.60 -6.78 2.20 -164.85 -0.36 -7.14 16 27 C 0.10 1.00 6.85 -3.12 -0.02 0.97 16 28 C -0.13 -1.10 7.19 -25.02 -0.18 -1.28 16 29 C -0.16 -1.44 6.87 -26.66 -0.18 -1.62 16 30 C 0.52 6.47 7.39 -10.86 -0.08 6.39 16 31 O -0.54 -8.37 15.07 5.56 0.08 -8.28 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.30 6.65 -51.93 -0.35 0.96 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.39 4.96 8.02 -40.82 -0.33 4.64 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.88 7.34 -51.93 -0.38 0.50 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 42 H 0.05 0.79 6.48 -51.93 -0.34 0.46 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.10 1.12 6.71 -51.93 -0.35 0.77 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -31.91 384.23 -9.76 -41.67 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.21 Total: 8.03 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.06 Total: 3.58 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.40 Total: -58.52 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.16 Total: -17.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.91 -9.76 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109973607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.111 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds