Wall clock time and date at job start Sat Apr 11 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47315 * 2 1 4 4 O 1.42903 * 109.47269 * 120.00512 * 2 1 3 5 5 C 1.35644 * 117.00292 * 85.35455 * 4 2 1 6 6 C 1.39349 * 120.53784 * 354.59687 * 5 4 2 7 7 C 1.38303 * 118.43582 * 180.28794 * 6 5 4 8 8 C 1.38767 * 119.44704 * 359.73121 * 7 6 5 9 9 N 1.31371 * 121.06572 * 359.97438 * 8 7 6 10 10 C 1.32862 * 121.69755 * 0.02562 * 9 8 7 11 11 C 1.47831 * 119.78297 * 180.02562 * 10 9 8 12 12 O 1.21552 * 119.99822 * 179.97438 * 11 10 9 13 13 N 1.34772 * 119.99878 * 359.97438 * 11 10 9 14 14 C 1.46504 * 119.99986 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.47077 * 34.99075 * 14 13 11 16 16 C 1.52999 * 109.47107 * 275.00257 * 14 13 11 17 17 C 1.52992 * 109.47372 * 154.99770 * 14 13 11 18 18 C 1.53009 * 109.47086 * 294.99833 * 17 14 13 19 19 H 1.08995 * 109.46933 * 55.00136 * 18 17 14 20 20 C 1.52998 * 109.47007 * 174.99997 * 18 17 14 21 21 N 1.46497 * 109.47062 * 295.00170 * 18 17 14 22 22 C 1.36939 * 119.99928 * 155.00026 * 21 18 17 23 23 H 1.07990 * 119.99683 * 359.97438 * 22 21 18 24 24 C 1.38811 * 119.99726 * 179.72059 * 22 21 18 25 25 N 1.31616 * 120.00320 * 0.27776 * 24 22 21 26 26 Si 1.86800 * 119.99797 * 180.27309 * 24 22 21 27 27 H 1.48499 * 109.46983 * 60.00117 * 26 24 22 28 28 H 1.48494 * 109.47209 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47436 * 300.00638 * 26 24 22 30 30 H 1.08993 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46966 * 300.00314 * 1 2 3 32 32 H 1.09007 * 109.46841 * 59.99299 * 1 2 3 33 33 H 1.09000 * 109.47251 * 240.00410 * 2 1 3 34 34 H 1.09005 * 109.46888 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47120 * 300.00262 * 3 2 1 36 36 H 1.09001 * 109.47071 * 60.00653 * 3 2 1 37 37 H 1.07996 * 120.78035 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.27422 * 179.70876 * 7 6 5 39 39 H 1.08000 * 119.46749 * 180.02562 * 8 7 6 40 40 H 0.96996 * 120.00306 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.47453 * 59.99385 * 16 14 13 42 42 H 1.08999 * 109.47621 * 179.97438 * 16 14 13 43 43 H 1.09004 * 109.46442 * 299.99845 * 16 14 13 44 44 H 1.08999 * 109.47048 * 175.00357 * 17 14 13 45 45 H 1.08992 * 109.47562 * 54.99888 * 17 14 13 46 46 H 1.09004 * 109.46894 * 60.00353 * 20 18 17 47 47 H 1.08996 * 109.47296 * 179.97438 * 20 18 17 48 48 H 1.09002 * 109.47179 * 300.00382 * 20 18 17 49 49 H 0.97003 * 120.00019 * 334.99485 * 21 18 17 50 50 H 0.97000 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1193 -2.0236 1.0954 6 6 1.6758 -2.7127 -0.0316 7 6 1.8067 -4.0893 -0.0557 8 6 2.3757 -4.7396 1.0302 9 7 2.7923 -4.0687 2.0800 10 6 2.6881 -2.7460 2.1496 11 6 3.1714 -2.0336 3.3514 12 8 3.0784 -0.8235 3.4191 13 7 3.7151 -2.7258 4.3720 14 6 4.1935 -2.0199 5.5632 15 1 3.5462 -1.1661 5.7642 16 6 5.6237 -1.5306 5.3261 17 6 4.1717 -2.9699 6.7622 18 6 2.7263 -3.3610 7.0768 19 1 2.2601 -3.7773 6.1839 20 6 2.7124 -4.4063 8.1940 21 7 1.9824 -2.1750 7.5084 22 6 0.6223 -2.1273 7.3570 23 1 0.0981 -2.9638 6.9191 24 6 -0.0832 -1.0060 7.7713 25 7 0.5557 0.0137 8.3045 26 14 -1.9395 -0.9440 7.5717 27 1 -2.5568 -2.0584 8.3348 28 1 -2.4498 0.3518 8.0871 29 1 -2.2876 -1.0761 6.1342 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 1.2363 -2.1846 -0.8649 38 1 1.4685 -4.6535 -0.9123 39 1 2.4784 -5.8145 1.0115 40 1 3.7890 -3.6914 4.3181 41 1 5.6392 -0.8537 4.4718 42 1 5.9796 -1.0050 6.2122 43 1 6.2710 -2.3843 5.1251 44 1 4.6101 -2.4729 7.6276 45 1 4.7473 -3.8651 6.5271 46 1 3.1787 -3.9899 9.0869 47 1 1.6828 -4.6846 8.4184 48 1 3.2660 -5.2887 7.8729 49 1 2.4533 -1.4236 7.9015 50 1 0.0627 0.7974 8.5937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136069708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:37 Heat of formation + Delta-G solvation = -35.106917 kcal Electronic energy + Delta-G solvation = -30218.861530 eV Core-core repulsion = 26246.718540 eV Total energy + Delta-G solvation = -3972.142990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99840 -39.07659 -38.44752 -36.60947 -34.30216 -33.41231 -32.67730 -31.91860 -30.72442 -29.85765 -28.47335 -27.47558 -26.19454 -24.84216 -23.87669 -23.47593 -21.58717 -21.12453 -20.18766 -19.52799 -18.53493 -17.73176 -17.02362 -16.93761 -15.76595 -15.53841 -15.28158 -14.82926 -14.66468 -14.57260 -14.23734 -13.80196 -13.68742 -13.60333 -13.33732 -13.10164 -12.79795 -12.65662 -12.53304 -12.43794 -12.37690 -12.04831 -12.02161 -11.83829 -11.61583 -11.46573 -11.17036 -10.95753 -10.91885 -10.73349 -10.50703 -10.29324 -10.14238 -10.01912 -9.93143 -9.77548 -9.50425 -9.34322 -8.76656 -8.58219 -8.37365 -6.80333 -5.62406 -2.89387 0.64593 1.11508 2.96517 3.05628 3.49865 3.52142 3.56137 3.57106 3.98369 4.26200 4.40479 4.53320 4.61795 4.71480 4.72407 4.84387 4.88329 4.99553 5.26157 5.35036 5.36917 5.50329 5.53263 5.57396 5.62486 5.63274 5.72160 5.78061 5.79237 5.84896 5.99351 6.03336 6.03656 6.08634 6.15276 6.25417 6.28196 6.42514 6.49118 6.57066 6.70795 6.86782 6.98690 7.10476 7.19377 7.20938 7.65533 7.82616 8.08914 8.56368 8.75523 9.67416 10.25805 10.60343 11.60516 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008753 B = 0.004262 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.133679 B = 6568.366081 C = 7825.890020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 C -0.147 4.147 4 O -0.261 6.261 5 C 0.142 3.858 6 C -0.181 4.181 7 C -0.112 4.112 8 C 0.053 3.947 9 N -0.419 5.419 10 C 0.050 3.950 11 C 0.570 3.430 12 O -0.508 6.508 13 N -0.699 5.699 14 C 0.144 3.856 15 H 0.105 0.895 16 C -0.160 4.160 17 C -0.130 4.130 18 C 0.171 3.829 19 H 0.047 0.953 20 C -0.164 4.164 21 N -0.720 5.720 22 C -0.230 4.230 23 H 0.065 0.935 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.402 0.598 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.034 0.966 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -6.801 -20.239 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.171 6.171 5 C 0.091 3.909 6 C -0.207 4.207 7 C -0.132 4.132 8 C -0.107 4.107 9 N -0.131 5.131 10 C -0.089 4.089 11 C 0.354 3.646 12 O -0.382 6.382 13 N -0.351 5.351 14 C 0.040 3.960 15 H 0.123 0.877 16 C -0.218 4.218 17 C -0.168 4.168 18 C 0.061 3.939 19 H 0.065 0.935 20 C -0.225 4.225 21 N -0.361 5.361 22 C -0.362 4.362 23 H 0.083 0.917 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.733 3.267 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.237 0.763 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.216 0.784 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.181 -6.147 -19.314 21.503 hybrid contribution -1.553 0.036 -0.966 1.829 sum 5.628 -6.111 -20.280 21.916 Atomic orbital electron populations 1.22403 0.94799 1.03037 1.03669 1.22594 0.94635 0.94380 0.87080 1.21824 1.02225 0.93129 1.03238 1.86527 1.78797 1.14410 1.37388 1.20045 0.92553 0.84717 0.93578 1.21773 1.04711 0.95568 0.98681 1.22153 0.97206 0.94101 0.99786 1.22654 0.98229 1.00536 0.89331 1.67617 1.13829 1.06215 1.25423 1.20896 1.03309 0.89232 0.95454 1.17494 0.78325 0.86706 0.82108 1.90853 1.54974 1.12824 1.79527 1.45753 1.61383 1.10858 1.17088 1.21041 0.94847 0.96742 0.83392 0.87678 1.22180 0.96682 1.00864 1.02113 1.22152 0.98813 0.98653 0.97221 1.20232 0.89878 0.88890 0.94927 0.93484 1.22447 1.01036 0.98483 1.00487 1.42382 1.04349 1.15639 1.73759 1.19114 0.83528 1.00362 1.33154 0.91668 1.24661 0.97492 0.96711 1.01952 1.69634 1.34294 1.06595 1.47574 0.86354 0.86265 0.76569 0.77557 1.21476 1.21755 1.21510 0.92086 0.90696 0.90927 0.91236 0.91556 0.90667 0.90793 0.83739 0.84235 0.81996 0.76306 0.92579 0.91783 0.93165 0.90676 0.92024 0.93599 0.93007 0.94691 0.78362 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.20 37.15 0.34 -1.49 16 2 C 0.07 0.77 2.85 -26.73 -0.08 0.69 16 3 C -0.15 -1.49 9.56 37.16 0.36 -1.13 16 4 O -0.26 -4.17 7.86 -40.58 -0.32 -4.49 16 5 C 0.14 2.13 6.62 -38.55 -0.26 1.87 16 6 C -0.18 -1.95 8.35 -39.14 -0.33 -2.27 16 7 C -0.11 -1.01 10.10 -39.36 -0.40 -1.41 16 8 C 0.05 0.56 11.17 -17.55 -0.20 0.36 16 9 N -0.42 -5.93 9.54 -9.71 -0.09 -6.02 16 10 C 0.05 0.84 6.76 -82.88 -0.56 0.28 16 11 C 0.57 11.06 7.77 -12.34 -0.10 10.97 16 12 O -0.51 -11.62 14.80 -16.63 -0.25 -11.87 16 13 N -0.70 -12.10 4.44 -54.75 -0.24 -12.35 16 14 C 0.14 2.56 2.52 -67.93 -0.17 2.39 16 15 H 0.11 2.39 7.05 -51.93 -0.37 2.02 16 16 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 17 C -0.13 -2.15 4.29 -26.73 -0.11 -2.27 16 18 C 0.17 3.46 2.84 -67.93 -0.19 3.27 16 19 H 0.05 1.01 7.56 -51.93 -0.39 0.61 16 20 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 21 N -0.72 -18.47 4.49 -53.43 -0.24 -18.71 16 22 C -0.23 -6.65 9.93 -15.06 -0.15 -6.80 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.23 13.06 55.49 0.72 -28.50 16 26 Si 0.90 23.62 29.55 -169.99 -5.02 18.59 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H 0.06 0.61 6.98 -51.93 -0.36 0.25 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.60 6.32 -51.93 -0.33 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.15 1.16 5.62 -52.49 -0.29 0.87 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.40 6.17 7.93 -40.82 -0.32 5.84 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.38 10.45 7.80 -40.82 -0.32 10.14 16 50 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 408.86 15.07 6.16 6.16 Total: -1.00 -35.61 408.86 -8.78 -44.39 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.27 Total: 13.56 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.23 Total: -0.77 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: 0.15 Total: -65.58 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.57 Total: -16.36 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.59 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.61 -8.78 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136069708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.285 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds