Wall clock time and date at job start Sat Apr 11 2020 04:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47315 * 2 1 4 4 O 1.42903 * 109.47269 * 120.00512 * 2 1 3 5 5 C 1.35644 * 117.00292 * 85.35455 * 4 2 1 6 6 C 1.39349 * 120.53784 * 354.59687 * 5 4 2 7 7 C 1.38303 * 118.43582 * 180.28794 * 6 5 4 8 8 C 1.38767 * 119.44704 * 359.73121 * 7 6 5 9 9 N 1.31371 * 121.06572 * 359.97438 * 8 7 6 10 10 C 1.32862 * 121.69755 * 0.02562 * 9 8 7 11 11 C 1.47831 * 119.78297 * 180.02562 * 10 9 8 12 12 O 1.21552 * 119.99822 * 179.97438 * 11 10 9 13 13 N 1.34772 * 119.99878 * 359.97438 * 11 10 9 14 14 C 1.46504 * 119.99986 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.47077 * 34.99075 * 14 13 11 16 16 C 1.52999 * 109.47107 * 275.00257 * 14 13 11 17 17 C 1.52992 * 109.47372 * 154.99770 * 14 13 11 18 18 C 1.53009 * 109.47086 * 294.99833 * 17 14 13 19 19 H 1.08995 * 109.46933 * 55.00136 * 18 17 14 20 20 C 1.52998 * 109.47007 * 174.99997 * 18 17 14 21 21 N 1.46497 * 109.47062 * 295.00170 * 18 17 14 22 22 C 1.36939 * 119.99928 * 155.00026 * 21 18 17 23 23 H 1.07990 * 119.99683 * 359.97438 * 22 21 18 24 24 C 1.38811 * 119.99726 * 179.72059 * 22 21 18 25 25 N 1.31616 * 120.00320 * 0.27776 * 24 22 21 26 26 Si 1.86800 * 119.99797 * 180.27309 * 24 22 21 27 27 H 1.48499 * 109.46983 * 60.00117 * 26 24 22 28 28 H 1.48494 * 109.47209 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47436 * 300.00638 * 26 24 22 30 30 H 1.08993 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46966 * 300.00314 * 1 2 3 32 32 H 1.09007 * 109.46841 * 59.99299 * 1 2 3 33 33 H 1.09000 * 109.47251 * 240.00410 * 2 1 3 34 34 H 1.09005 * 109.46888 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47120 * 300.00262 * 3 2 1 36 36 H 1.09001 * 109.47071 * 60.00653 * 3 2 1 37 37 H 1.07996 * 120.78035 * 0.02562 * 6 5 4 38 38 H 1.08001 * 120.27422 * 179.70876 * 7 6 5 39 39 H 1.08000 * 119.46749 * 180.02562 * 8 7 6 40 40 H 0.96996 * 120.00306 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.47453 * 59.99385 * 16 14 13 42 42 H 1.08999 * 109.47621 * 179.97438 * 16 14 13 43 43 H 1.09004 * 109.46442 * 299.99845 * 16 14 13 44 44 H 1.08999 * 109.47048 * 175.00357 * 17 14 13 45 45 H 1.08992 * 109.47562 * 54.99888 * 17 14 13 46 46 H 1.09004 * 109.46894 * 60.00353 * 20 18 17 47 47 H 1.08996 * 109.47296 * 179.97438 * 20 18 17 48 48 H 1.09002 * 109.47179 * 300.00382 * 20 18 17 49 49 H 0.97003 * 120.00019 * 334.99485 * 21 18 17 50 50 H 0.97000 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1193 -2.0236 1.0954 6 6 1.6758 -2.7127 -0.0316 7 6 1.8067 -4.0893 -0.0557 8 6 2.3757 -4.7396 1.0302 9 7 2.7923 -4.0687 2.0800 10 6 2.6881 -2.7460 2.1496 11 6 3.1714 -2.0336 3.3514 12 8 3.0784 -0.8235 3.4191 13 7 3.7151 -2.7258 4.3720 14 6 4.1935 -2.0199 5.5632 15 1 3.5462 -1.1661 5.7642 16 6 5.6237 -1.5306 5.3261 17 6 4.1717 -2.9699 6.7622 18 6 2.7263 -3.3610 7.0768 19 1 2.2601 -3.7773 6.1839 20 6 2.7124 -4.4063 8.1940 21 7 1.9824 -2.1750 7.5084 22 6 0.6223 -2.1273 7.3570 23 1 0.0981 -2.9638 6.9191 24 6 -0.0832 -1.0060 7.7713 25 7 0.5557 0.0137 8.3045 26 14 -1.9395 -0.9440 7.5717 27 1 -2.5568 -2.0584 8.3348 28 1 -2.4498 0.3518 8.0871 29 1 -2.2876 -1.0761 6.1342 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 1.9563 0.8901 37 1 1.2363 -2.1846 -0.8649 38 1 1.4685 -4.6535 -0.9123 39 1 2.4784 -5.8145 1.0115 40 1 3.7890 -3.6914 4.3181 41 1 5.6392 -0.8537 4.4718 42 1 5.9796 -1.0050 6.2122 43 1 6.2710 -2.3843 5.1251 44 1 4.6101 -2.4729 7.6276 45 1 4.7473 -3.8651 6.5271 46 1 3.1787 -3.9899 9.0869 47 1 1.6828 -4.6846 8.4184 48 1 3.2660 -5.2887 7.8729 49 1 2.4533 -1.4236 7.9015 50 1 0.0627 0.7974 8.5937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136069708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:36 Heat of formation + Delta-G solvation = -59.497479 kcal Electronic energy + Delta-G solvation = -30219.919184 eV Core-core repulsion = 26246.718540 eV Total energy + Delta-G solvation = -3973.200644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.00487 -40.40475 -39.44846 -38.23249 -36.02823 -34.30976 -34.06778 -33.47557 -31.99560 -31.01040 -30.38573 -28.28647 -27.60454 -25.91071 -25.63091 -24.78493 -22.75750 -22.14995 -21.61909 -21.12751 -19.61124 -19.25171 -18.72056 -17.95025 -17.02078 -16.78331 -16.58297 -16.25707 -15.90131 -15.65034 -15.51902 -15.47126 -15.23177 -14.78184 -14.55909 -14.48322 -14.14619 -13.93366 -13.61653 -13.48164 -13.36524 -13.30345 -13.19627 -13.16256 -12.93385 -12.86149 -12.79737 -12.67306 -12.26966 -12.23349 -12.02895 -11.83428 -11.80418 -11.56854 -11.42670 -11.18150 -10.92108 -10.78844 -10.55266 -9.96210 -9.44835 -8.95214 -7.92527 -5.17762 -0.32470 0.24000 1.38236 1.42640 1.47796 1.85967 2.08358 2.24454 2.54620 2.87463 3.27171 3.41036 3.57136 3.72221 3.76271 3.83315 3.90740 4.00900 4.03982 4.10142 4.11948 4.19502 4.40849 4.49932 4.55009 4.60129 4.69060 4.70928 4.75289 4.78425 4.78930 4.83451 4.90595 4.93967 4.99589 5.03821 5.09701 5.16966 5.19970 5.23358 5.34124 5.42546 5.47828 5.50155 5.62816 5.69934 6.30232 6.30573 6.56868 6.88202 7.35914 7.38037 8.16208 8.37062 9.31129 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008753 B = 0.004262 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3198.133679 B = 6568.366081 C = 7825.890020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.146 4.146 4 O -0.303 6.303 5 C 0.122 3.878 6 C -0.177 4.177 7 C -0.087 4.087 8 C 0.052 3.948 9 N -0.436 5.436 10 C 0.003 3.997 11 C 0.559 3.441 12 O -0.563 6.563 13 N -0.691 5.691 14 C 0.146 3.854 15 H 0.046 0.954 16 C -0.149 4.149 17 C -0.116 4.116 18 C 0.164 3.836 19 H 0.035 0.965 20 C -0.154 4.154 21 N -0.730 5.730 22 C -0.227 4.227 23 H 0.065 0.935 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.273 1.273 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.175 0.825 38 H 0.191 0.809 39 H 0.201 0.799 40 H 0.412 0.588 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.045 0.955 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -10.172 -23.109 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.004 3.996 3 C -0.203 4.203 4 O -0.215 6.215 5 C 0.071 3.929 6 C -0.203 4.203 7 C -0.107 4.107 8 C -0.110 4.110 9 N -0.148 5.148 10 C -0.134 4.134 11 C 0.345 3.655 12 O -0.441 6.441 13 N -0.342 5.342 14 C 0.041 3.959 15 H 0.064 0.936 16 C -0.207 4.207 17 C -0.155 4.155 18 C 0.056 3.944 19 H 0.053 0.947 20 C -0.213 4.213 21 N -0.371 5.371 22 C -0.360 4.360 23 H 0.083 0.917 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.791 3.209 27 H -0.199 1.199 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.193 0.807 38 H 0.209 0.791 39 H 0.218 0.782 40 H 0.249 0.751 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.095 0.905 49 H 0.202 0.798 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.273 -9.588 -22.174 25.229 hybrid contribution -1.554 0.937 -0.231 1.830 sum 5.718 -8.651 -22.405 24.689 Atomic orbital electron populations 1.22389 0.94134 1.03184 1.03724 1.22936 0.95222 0.94495 0.86931 1.21872 1.01748 0.93148 1.03546 1.86494 1.79425 1.15539 1.40010 1.20335 0.93195 0.84638 0.94702 1.22166 1.03758 0.96520 0.97838 1.22744 0.94111 0.93421 1.00390 1.23465 0.96756 1.02200 0.88615 1.67537 1.14802 1.05091 1.27362 1.20503 1.06967 0.90514 0.95374 1.18147 0.77632 0.86462 0.83297 1.90801 1.57274 1.15126 1.80874 1.45685 1.60857 1.11207 1.16463 1.20881 0.95243 0.95364 0.84392 0.93590 1.22066 0.95231 1.01630 1.01754 1.22065 0.96712 1.00017 0.96664 1.20490 0.91404 0.87538 0.94957 0.94702 1.22279 1.00374 0.99187 0.99509 1.42564 1.03639 1.17086 1.73778 1.19434 0.85216 0.99915 1.31389 0.91734 1.25428 1.01756 0.96782 1.02969 1.69793 1.35593 1.07080 1.49432 0.85385 0.81487 0.76727 0.77305 1.19913 1.21926 1.21618 0.91847 0.93839 0.87573 0.88131 0.92351 0.87086 0.93625 0.80743 0.79146 0.78187 0.75079 0.94612 0.90751 0.90099 0.90129 0.87741 0.93608 0.95197 0.90531 0.79769 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 9.20 71.98 0.66 -2.80 16 2 C 0.06 1.31 2.85 30.59 0.09 1.39 16 3 C -0.15 -3.05 9.56 71.98 0.69 -2.36 16 4 O -0.30 -10.27 7.86 -68.60 -0.54 -10.81 16 5 C 0.12 3.70 6.62 22.93 0.15 3.85 16 6 C -0.18 -3.30 8.35 22.55 0.19 -3.12 16 7 C -0.09 -1.17 10.10 22.41 0.23 -0.94 16 8 C 0.05 0.91 11.17 84.89 0.95 1.86 16 9 N -0.44 -11.90 9.54 -184.63 -1.76 -13.67 16 10 C 0.00 0.09 6.76 41.93 0.28 0.37 16 11 C 0.56 23.28 7.77 86.78 0.67 23.96 16 12 O -0.56 -28.42 14.80 17.11 0.25 -28.17 16 13 N -0.69 -24.88 4.44 -445.43 -1.98 -26.86 16 14 C 0.15 5.40 2.52 44.99 0.11 5.51 16 15 H 0.05 2.27 7.05 -2.38 -0.02 2.26 16 16 C -0.15 -4.53 9.48 71.98 0.68 -3.85 16 17 C -0.12 -3.76 4.29 30.59 0.13 -3.63 16 18 C 0.16 6.67 2.84 44.99 0.13 6.80 16 19 H 0.03 1.50 7.56 -2.39 -0.02 1.48 16 20 C -0.15 -5.47 9.49 71.98 0.68 -4.78 16 21 N -0.73 -38.91 4.49 -322.95 -1.45 -40.36 16 22 C -0.23 -13.58 9.93 84.03 0.83 -12.74 16 23 H 0.06 3.78 7.83 -2.92 -0.02 3.76 16 24 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 25 N -0.97 -63.34 13.06 21.65 0.28 -63.06 16 26 Si 0.96 50.05 29.55 68.60 2.03 52.08 16 27 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 29 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 30 H 0.06 1.18 6.98 -2.39 -0.02 1.16 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.10 1.52 6.32 -2.39 -0.02 1.50 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.18 2.08 5.62 -2.91 -0.02 2.06 16 38 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.41 12.69 7.93 -92.71 -0.73 11.96 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.37 21.30 7.80 -92.71 -0.72 20.58 16 50 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -86.83 408.86 3.27 -83.56 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.51 Total: 42.08 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.95 Total: 5.21 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -4.91 Total: -143.95 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.29 Total: -38.98 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.03 Total: 52.08 kcal Total: -86.83 3.27 -83.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136069708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.065 kcal (2) G-P(sol) polarization free energy of solvation -86.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds