Wall clock time and date at job start Sat Apr 11 2020 04:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.52996 * 109.46775 * 240.00268 * 2 1 3 5 5 C 1.53008 * 109.47146 * 174.99990 * 4 2 1 6 6 C 1.52996 * 109.47146 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47113 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47393 * 179.97438 * 7 6 5 9 9 C 1.36936 * 120.00156 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99767 * 0.02562 * 9 8 7 11 11 C 1.38809 * 120.00128 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00068 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99940 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47078 * 90.00430 * 13 11 9 15 15 H 1.48503 * 109.46830 * 210.00074 * 13 11 9 16 16 H 1.48498 * 109.47228 * 330.00333 * 13 11 9 17 17 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 18 18 C 1.34784 * 119.99864 * 274.99655 * 17 2 1 19 19 O 1.21588 * 119.99858 * 359.72927 * 18 17 2 20 20 C 1.47511 * 120.00157 * 179.72952 * 18 17 2 21 21 O 1.35185 * 127.15169 * 0.02562 * 20 18 17 22 22 N 1.21473 * 111.55467 * 179.97438 * 21 20 18 23 23 C 1.29069 * 111.68408 * 359.92125 * 22 21 20 24 24 C 1.35244 * 127.15206 * 179.71532 * 20 18 17 25 25 C 1.50107 * 131.33515 * 1.10426 * 24 20 18 26 26 C 1.53571 * 108.08029 * 163.18261 * 25 24 20 27 27 C 1.53003 * 109.81065 * 49.81880 * 26 25 24 28 28 C 1.50649 * 130.33912 * 180.30245 * 23 22 21 29 29 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 31 31 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 32 32 H 1.09004 * 109.47220 * 294.99561 * 4 2 1 33 33 H 1.09006 * 109.47725 * 55.00015 * 4 2 1 34 34 H 1.09004 * 109.46710 * 299.99883 * 5 4 2 35 35 H 1.08993 * 109.46846 * 59.99635 * 5 4 2 36 36 H 1.09004 * 109.47220 * 299.99570 * 6 5 4 37 37 H 1.08993 * 109.47546 * 60.00064 * 6 5 4 38 38 H 1.09004 * 109.46642 * 299.99821 * 7 6 5 39 39 H 1.09007 * 109.47413 * 59.99379 * 7 6 5 40 40 H 0.96996 * 119.99534 * 359.97438 * 8 7 6 41 41 H 0.96997 * 120.00627 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00740 * 94.72347 * 17 2 1 43 43 H 1.08998 * 109.90951 * 43.41965 * 25 24 20 44 44 H 1.09009 * 109.53517 * 282.71786 * 25 24 20 45 45 H 1.09007 * 109.41722 * 289.71665 * 26 25 24 46 46 H 1.09003 * 109.41586 * 169.92489 * 26 25 24 47 47 H 1.08996 * 109.38088 * 168.11177 * 27 26 25 48 48 H 1.09001 * 109.28330 * 48.39298 * 27 26 25 49 49 H 1.09008 * 109.74038 * 282.88448 * 28 23 22 50 50 H 1.08997 * 109.74319 * 43.54601 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3350 -2.5627 7 6 5.5996 -1.2276 -2.6269 8 7 6.0880 -1.9192 -3.8225 9 6 7.4301 -1.9558 -4.0921 10 1 8.1286 -1.4751 -3.4231 11 6 7.8929 -2.6115 -5.2246 12 7 7.0418 -3.1977 -6.0396 13 14 9.7237 -2.6620 -5.5920 14 1 10.3234 -3.8621 -4.9554 15 1 9.9323 -2.7244 -7.0610 16 1 10.3709 -1.4395 -5.0516 17 7 2.0183 -0.6907 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8626 1.1626 2.4105 20 6 2.6331 -0.7151 3.5630 21 8 2.9887 -2.0152 3.6671 22 7 3.3484 -2.2906 4.7942 23 6 3.2923 -1.2656 5.5765 24 6 2.8211 -0.1848 4.7928 25 6 2.5914 1.2017 5.3203 26 6 2.5703 1.1306 6.8542 27 6 3.7947 0.3615 7.3545 28 6 3.6414 -1.1325 7.0360 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1371 34 1 3.8531 0.4370 -1.3574 35 1 3.9994 -1.0728 -0.4261 36 1 3.7865 -2.3853 -2.5186 37 1 3.6402 -0.8759 -3.4506 38 1 5.8883 -0.1774 -2.6708 39 1 6.0340 -1.6870 -1.7389 40 1 5.4607 -2.3512 -4.4230 41 1 7.3651 -3.6563 -6.8308 42 1 2.2452 -1.6328 1.1536 43 1 1.6379 1.5841 4.9561 44 1 3.4003 1.8549 4.9929 45 1 1.6639 0.6208 7.1810 46 1 2.5845 2.1406 7.2640 47 1 3.8891 0.4933 8.4324 48 1 4.6879 0.7477 6.8633 49 1 2.8456 -1.5607 7.6455 50 1 4.5792 -1.6496 7.2389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171789430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:15 Heat of formation + Delta-G solvation = 0.671150 kcal Electronic energy + Delta-G solvation = -28363.280566 eV Core-core repulsion = 24392.689030 eV Total energy + Delta-G solvation = -3970.591536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.30188 -40.13758 -38.20133 -37.07904 -35.30171 -33.52439 -33.14239 -32.76079 -31.66681 -30.45373 -29.89936 -27.46456 -25.66656 -24.46545 -23.77950 -23.59326 -22.06400 -20.93702 -20.72640 -20.66300 -20.24375 -18.43416 -18.06421 -16.99895 -16.69842 -16.20874 -15.48141 -15.28867 -15.20413 -14.87442 -14.66595 -14.40351 -14.33177 -13.99255 -13.69966 -13.55605 -13.15790 -13.06291 -12.97679 -12.95321 -12.88699 -12.44672 -12.14904 -11.79072 -11.52022 -11.47735 -11.43174 -11.28322 -11.02577 -10.99580 -10.79909 -10.71344 -10.54753 -10.41768 -10.29068 -10.28462 -9.98202 -9.85652 -9.65197 -9.37618 -8.83592 -6.87963 -5.73255 -3.01532 0.50355 1.70870 2.28984 2.68806 2.92477 3.45817 3.48226 3.50566 3.52561 4.03628 4.27406 4.35517 4.43659 4.48998 4.59292 4.66225 4.78053 4.83141 4.93176 4.94160 4.99221 5.06991 5.22344 5.30059 5.33702 5.35220 5.40883 5.46019 5.52502 5.54487 5.58975 5.62042 5.66853 5.74701 5.77291 5.80453 5.85421 5.92092 6.07853 6.11007 6.31372 6.31580 6.40166 6.48095 6.91875 6.95741 7.02615 7.64586 7.73110 7.79045 8.46204 9.56871 10.16233 10.50856 11.49863 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.002047 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.053890 B =13677.570474 C =15129.170404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.609 3.391 19 O -0.512 6.512 20 C -0.083 4.083 21 O 0.103 5.897 22 N -0.330 5.330 23 C 0.015 3.985 24 C -0.119 4.119 25 C -0.049 4.049 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.041 4.041 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.408 0.592 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 8.072 27.276 32.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.357 5.357 18 C 0.392 3.608 19 O -0.388 6.388 20 C -0.147 4.147 21 O 0.033 5.967 22 N -0.033 5.033 23 C -0.146 4.146 24 C -0.123 4.123 25 C -0.087 4.087 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.079 4.079 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.244 0.756 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.754 7.700 27.447 32.570 hybrid contribution 0.842 -0.153 -0.486 0.984 sum -14.911 7.547 26.961 31.721 Atomic orbital electron populations 1.22195 0.94950 1.02400 1.02715 1.21180 0.94010 0.97812 0.83295 0.88834 1.21960 0.96981 1.01129 0.96482 1.21541 0.93874 1.01170 0.98811 1.21719 0.97256 1.00320 0.97029 1.20653 0.91027 0.95314 0.90577 1.42386 1.05329 1.64905 1.25265 1.19254 0.83933 1.28294 1.05430 0.91251 1.24752 0.97734 1.01014 0.97742 1.69658 1.32740 1.40754 1.15218 0.86175 0.85128 0.77670 0.77163 1.21732 1.21760 1.20781 1.46036 1.65963 1.14526 1.09182 1.16462 0.77843 0.85629 0.80875 1.90855 1.50297 1.13934 1.83711 1.23439 1.07981 0.85670 0.97616 1.85269 1.61791 1.24909 1.24772 1.73456 1.15087 1.23691 0.91035 1.23439 1.02654 0.88907 0.99573 1.21123 1.00813 0.99043 0.91367 1.20128 1.03941 0.89715 0.94867 1.21683 0.98525 1.01193 0.94536 1.21644 0.99062 0.93290 1.01801 1.20153 1.02955 0.98167 0.86614 0.92241 0.92191 0.91136 0.91080 0.89858 0.91898 0.92084 0.92061 0.92010 0.96580 0.96618 0.78343 0.93559 0.75633 0.88898 0.89308 0.91444 0.90506 0.90333 0.91108 0.89259 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.26 2.58 -67.94 -0.18 1.08 16 3 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.30 16 5 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.13 16 7 C 0.15 3.16 6.26 -4.04 -0.03 3.13 16 8 N -0.73 -19.36 5.60 -59.90 -0.34 -19.70 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 N -0.71 -6.49 4.53 -54.86 -0.25 -6.73 16 18 C 0.61 6.66 7.78 -12.48 -0.10 6.56 16 19 O -0.51 -6.66 15.59 5.29 0.08 -6.58 16 20 C -0.08 -0.89 7.28 -36.87 -0.27 -1.16 16 21 O 0.10 1.16 11.10 13.83 0.15 1.31 16 22 N -0.33 -3.87 12.03 33.15 0.40 -3.47 16 23 C 0.01 0.15 7.21 -82.51 -0.60 -0.45 16 24 C -0.12 -1.18 6.03 -104.70 -0.63 -1.81 16 25 C -0.05 -0.38 5.59 -27.87 -0.16 -0.54 16 26 C -0.12 -0.65 5.87 -26.43 -0.16 -0.80 16 27 C -0.12 -0.60 5.84 -26.46 -0.15 -0.75 16 28 C -0.04 -0.26 6.32 -27.64 -0.17 -0.44 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.74 7.75 -51.93 -0.40 0.33 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.41 3.23 8.45 -40.82 -0.34 2.88 16 43 H 0.09 0.77 7.77 -51.93 -0.40 0.36 16 44 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 49 H 0.09 0.47 8.14 -51.92 -0.42 0.04 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -33.82 407.39 -9.43 -43.25 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.59 Total: 4.78 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.73 Total: -8.72 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.54 Total: -58.05 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: 0.24 Total: -5.27 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.82 -9.43 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171789430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.919 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds