Wall clock time and date at job start Sat Apr 11 2020 04:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47225 * 2 1 4 4 C 1.50702 * 109.46722 * 119.99793 * 2 1 3 5 5 O 1.21282 * 120.00097 * 107.40800 * 4 2 1 6 6 N 1.34780 * 119.99693 * 287.40722 * 4 2 1 7 7 C 1.47168 * 120.70856 * 185.21749 * 6 4 2 8 8 C 1.53880 * 108.03484 * 132.73624 * 7 6 4 9 9 H 1.08998 * 112.09830 * 181.90916 * 8 7 6 10 10 C 1.54543 * 108.36808 * 306.25587 * 8 7 6 11 11 C 1.54830 * 104.74694 * 89.16682 * 10 8 7 12 12 C 1.54547 * 104.74338 * 0.02562 * 11 10 8 13 13 H 1.09000 * 112.68223 * 146.81044 * 12 11 10 14 14 C 1.47157 * 120.71442 * 5.19818 * 6 4 2 15 15 N 1.48310 * 104.35844 * 24.82035 * 12 11 10 16 16 C 1.36930 * 128.07715 * 139.07933 * 15 12 11 17 17 H 1.07999 * 120.00126 * 344.62120 * 16 15 12 18 18 C 1.38817 * 120.00008 * 164.61476 * 16 15 12 19 19 N 1.31620 * 119.99643 * 350.85376 * 18 16 15 20 20 Si 1.86799 * 119.99880 * 170.84942 * 18 16 15 21 21 H 1.48503 * 109.47024 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47183 * 300.00144 * 20 18 16 23 23 H 1.48501 * 109.47228 * 60.00291 * 20 18 16 24 24 N 1.46499 * 109.46739 * 239.99339 * 2 1 3 25 25 C 1.45753 * 117.94318 * 119.74638 * 24 2 1 26 26 C 1.53097 * 110.39002 * 160.74255 * 25 24 2 27 27 C 1.53349 * 108.52754 * 51.10947 * 26 25 24 28 28 C 1.53077 * 108.42520 * 292.31258 * 27 26 25 29 29 C 1.33352 * 117.94728 * 300.00255 * 24 2 1 30 30 O 1.21283 * 118.24841 * 2.24600 * 29 24 2 31 31 H 1.09004 * 109.46824 * 66.84027 * 1 2 3 32 32 H 1.08993 * 109.47456 * 186.84620 * 1 2 3 33 33 H 1.09001 * 109.47108 * 306.85162 * 1 2 3 34 34 H 1.09003 * 109.74459 * 13.10216 * 7 6 4 35 35 H 1.09000 * 109.78864 * 252.40008 * 7 6 4 36 36 H 1.09004 * 110.36804 * 208.13783 * 10 8 7 37 37 H 1.09000 * 110.36580 * 330.44783 * 10 8 7 38 38 H 1.08998 * 110.30770 * 241.24695 * 11 10 8 39 39 H 1.09003 * 110.61337 * 118.91199 * 11 10 8 40 40 H 1.09008 * 109.74956 * 346.89821 * 14 6 4 41 41 H 1.09006 * 109.75089 * 107.57653 * 14 6 4 42 42 H 0.97001 * 119.99494 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.29804 * 281.23139 * 25 24 2 44 44 H 1.09002 * 109.30136 * 40.60940 * 25 24 2 45 45 H 1.09001 * 109.80400 * 291.32563 * 26 25 24 46 46 H 1.08992 * 109.68382 * 170.82580 * 26 25 24 47 47 H 1.08996 * 109.67121 * 172.58246 * 27 26 25 48 48 H 1.08996 * 109.70342 * 52.06169 * 27 26 25 49 49 H 1.08997 * 109.39938 * 288.77167 * 28 27 26 50 50 H 1.08993 * 109.33010 * 168.98714 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5307 -1.8119 1.1339 6 7 1.9276 -0.1216 2.4384 7 6 2.5142 -0.7488 3.6336 8 6 3.3001 0.3293 4.4002 9 1 3.7924 -0.0737 5.2853 10 6 4.3014 0.9882 3.4247 11 6 3.5170 2.1611 2.7874 12 6 2.1173 2.0985 3.4396 13 1 1.6688 3.0837 3.5675 14 6 1.2248 1.1623 2.5903 15 7 2.3456 1.4141 4.7354 16 6 1.7982 1.7107 5.9550 17 1 1.3127 2.6625 6.1120 18 6 1.8672 0.7878 6.9896 19 7 2.2940 -0.4347 6.7536 20 14 1.3545 1.2809 8.7168 21 1 1.5215 0.1236 9.6322 22 1 2.2036 2.4065 9.1829 23 1 -0.0687 1.7049 8.7087 24 7 2.0183 -0.6908 -1.1961 25 6 2.8482 0.0618 -2.1284 26 6 3.6413 -0.8918 -3.0260 27 6 2.6684 -1.9065 -3.6388 28 6 2.1400 -2.8070 -2.5194 29 6 1.6712 -1.9670 -1.3662 30 8 0.9374 -2.4766 -0.5459 31 1 -0.3633 0.4042 -0.9449 32 1 -0.3634 -1.0202 0.1225 33 1 -0.3633 0.6163 0.8223 34 1 3.1870 -1.5527 3.3349 35 1 1.7221 -1.1478 4.2673 36 1 5.1708 1.3600 3.9671 37 1 4.6077 0.2768 2.6577 38 1 3.4398 2.0228 1.7089 39 1 3.9983 3.1125 3.0136 40 1 1.0549 1.6075 1.6099 41 1 0.2706 1.0028 3.0926 42 1 2.3419 -1.0797 7.4765 43 1 2.2123 0.6971 -2.7449 44 1 3.5428 0.6877 -1.5682 45 1 4.3924 -1.4161 -2.4352 46 1 4.1295 -0.3274 -3.8204 47 1 3.1886 -2.5112 -4.3815 48 1 1.8378 -1.3810 -4.1099 49 1 2.9359 -3.4717 -2.1833 50 1 1.3076 -3.4009 -2.8967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029595708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:28:10 Heat of formation + Delta-G solvation = -22.786946 kcal Electronic energy + Delta-G solvation = -31869.147438 eV Core-core repulsion = 27897.538682 eV Total energy + Delta-G solvation = -3971.608756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92962 -39.54408 -37.51888 -36.35676 -34.62728 -33.67487 -32.35433 -31.01912 -30.11405 -29.47473 -29.18397 -26.31313 -24.75211 -24.29609 -23.85269 -23.39999 -22.19726 -19.90853 -19.66531 -18.77844 -18.18376 -17.32858 -16.69994 -16.22102 -15.79272 -15.52600 -15.28438 -14.69809 -14.49411 -14.32294 -14.07017 -13.87513 -13.66992 -13.51962 -13.31467 -13.00286 -12.97116 -12.76444 -12.35076 -11.96101 -11.93539 -11.77173 -11.68783 -11.55334 -11.41512 -11.17947 -11.15271 -11.09393 -10.96421 -10.85286 -10.78848 -10.34029 -10.03533 -9.85867 -9.67164 -9.55442 -9.34563 -9.23316 -8.80220 -8.41750 -7.93418 -6.81254 -5.82367 -3.18455 2.80925 3.02850 3.26675 3.36963 3.42010 3.43317 3.78161 4.41918 4.48445 4.52364 4.53944 4.66399 4.90552 5.01869 5.12849 5.21343 5.22720 5.30701 5.31980 5.34498 5.50268 5.59428 5.61324 5.63038 5.68103 5.69494 5.73503 5.75589 5.80202 5.82579 5.94941 5.97599 6.19911 6.32903 6.34110 6.40321 6.51355 6.51658 6.66689 6.73289 6.81167 6.89837 7.07969 7.35516 7.52243 7.60721 7.72435 8.14989 8.20355 8.44973 8.87715 9.06442 9.68860 10.45449 11.30180 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.003362 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.264390 B = 8325.720582 C = 8573.028118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 H 0.102 0.898 4 C 0.503 3.497 5 O -0.534 6.534 6 N -0.593 5.593 7 C 0.117 3.883 8 C 0.168 3.832 9 H 0.117 0.883 10 C -0.135 4.135 11 C -0.120 4.120 12 C 0.133 3.867 13 H 0.078 0.922 14 C 0.093 3.907 15 N -0.584 5.584 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.002 4.002 19 N -0.912 5.912 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 N -0.595 5.595 25 C 0.116 3.884 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.132 4.132 29 C 0.523 3.477 30 O -0.525 6.525 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 3.502 -20.742 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.120 0.880 4 C 0.288 3.712 5 O -0.411 6.411 6 N -0.326 5.326 7 C -0.006 4.006 8 C 0.060 3.940 9 H 0.135 0.865 10 C -0.174 4.174 11 C -0.159 4.159 12 C 0.024 3.976 13 H 0.096 0.904 14 C -0.033 4.033 15 N -0.305 5.305 16 C -0.358 4.358 17 H 0.094 0.906 18 C -0.199 4.199 19 N -0.557 5.557 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.330 5.330 25 C -0.007 4.007 26 C -0.173 4.173 27 C -0.160 4.160 28 C -0.172 4.172 29 C 0.312 3.688 30 O -0.400 6.400 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.116 0.884 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.619 2.508 -20.080 20.301 hybrid contribution -0.261 0.321 0.879 0.972 sum 1.358 2.830 -19.201 19.456 Atomic orbital electron populations 1.22229 0.92702 1.05205 1.02210 1.20945 0.96352 0.95975 0.84733 0.88003 1.20486 0.79861 0.86328 0.84495 1.90645 1.45484 1.19279 1.85716 1.48114 1.54759 1.22227 1.07470 1.22364 0.98279 0.95958 0.84000 1.21891 0.88642 0.88193 0.95245 0.86529 1.22700 0.98642 0.97226 0.98813 1.22523 0.97185 0.98317 0.97864 1.22143 0.93140 0.94878 0.87464 0.90423 1.22776 0.96518 0.84814 0.99193 1.45173 1.49150 1.33827 1.02342 1.18935 1.31815 0.99051 0.85952 0.90628 1.24852 1.01324 0.95075 0.98690 1.69834 1.51560 1.02977 1.31341 0.86208 0.78283 0.77201 0.84051 1.21616 1.21201 1.21115 1.47097 1.51931 1.11671 1.22269 1.21425 0.93477 0.94233 0.91586 1.21898 0.98303 0.97856 0.99257 1.21654 0.99288 0.97569 0.97466 1.21637 1.03158 0.98381 0.93992 1.19878 0.80696 0.81301 0.86956 1.90698 1.36186 1.69652 1.43489 0.92136 0.89543 0.90956 0.91711 0.90414 0.92815 0.93086 0.93343 0.92582 0.91851 0.91574 0.93401 0.91763 0.90900 0.90722 0.89909 0.90784 0.91259 0.88448 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.62 37.16 0.32 -1.98 16 2 C 0.13 1.86 2.17 -69.08 -0.15 1.71 16 3 H 0.10 1.23 6.78 -51.93 -0.35 0.87 16 4 C 0.50 9.75 6.53 -10.98 -0.07 9.68 16 5 O -0.53 -12.37 13.41 -17.54 -0.24 -12.60 16 6 N -0.59 -11.72 2.28 -171.00 -0.39 -12.11 16 7 C 0.12 2.69 5.80 -3.22 -0.02 2.67 16 8 C 0.17 3.85 3.09 -65.65 -0.20 3.64 16 9 H 0.12 3.05 6.36 -51.93 -0.33 2.72 16 10 C -0.13 -2.59 6.23 -24.96 -0.16 -2.75 16 11 C -0.12 -2.02 6.24 -24.95 -0.16 -2.17 16 12 C 0.13 2.49 4.32 -65.21 -0.28 2.21 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C 0.09 1.62 4.75 -2.77 -0.01 1.60 16 15 N -0.58 -13.77 2.80 -152.08 -0.43 -14.20 16 16 C -0.23 -5.99 10.37 -15.06 -0.16 -6.14 16 17 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.00 -0.05 5.42 -17.43 -0.09 -0.15 16 19 N -0.91 -25.40 10.35 55.49 0.57 -24.83 16 20 Si 0.91 21.35 29.56 -169.99 -5.03 16.33 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 N -0.60 -7.93 2.69 -168.58 -0.45 -8.38 16 25 C 0.12 1.03 6.26 -4.39 -0.03 1.00 16 26 C -0.14 -1.00 6.03 -26.50 -0.16 -1.16 16 27 C -0.12 -0.90 6.03 -26.51 -0.16 -1.06 16 28 C -0.13 -1.43 6.03 -28.10 -0.17 -1.60 16 29 C 0.52 8.03 6.12 -11.87 -0.07 7.96 16 30 O -0.52 -10.52 12.54 -17.54 -0.22 -10.74 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.49 6.05 -51.93 -0.31 1.18 16 33 H 0.07 0.95 6.04 -51.93 -0.31 0.64 16 34 H 0.06 1.54 7.16 -51.93 -0.37 1.16 16 35 H 0.08 2.06 7.77 -51.93 -0.40 1.66 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.87 4.91 -51.92 -0.25 0.62 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 49 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -33.40 371.60 -10.34 -43.74 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.19 Total: 3.72 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.57 Total: 13.47 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.69 Total: -59.51 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.46 Total: -23.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.40 -10.34 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029595708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.954 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds