Wall clock time and date at job start Sat Apr 11 2020 04:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.36595 * 126.57488 * 269.68768 * 3 2 1 5 5 C 1.47526 * 125.77486 * 0.02562 * 4 3 2 6 6 O 1.21591 * 119.99587 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99785 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99754 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.63875 * 325.70771 * 8 7 5 10 10 C 1.54323 * 110.71667 * 88.84436 * 8 7 5 11 11 N 1.47023 * 107.27045 * 96.17265 * 10 8 7 12 12 C 1.36934 * 125.65476 * 178.90614 * 11 10 8 13 13 H 1.07996 * 120.00407 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99195 * 0.02562 * 12 11 10 15 15 N 1.31611 * 120.00421 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99483 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47383 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47229 * 120.00084 * 16 14 12 19 19 H 1.48503 * 109.47363 * 239.99966 * 16 14 12 20 20 C 1.47434 * 108.70208 * 358.94039 * 11 10 8 21 21 C 1.55150 * 110.72136 * 202.56488 * 8 7 5 22 22 C 1.53001 * 111.00419 * 35.21491 * 21 8 7 23 23 C 1.52998 * 111.00308 * 159.06739 * 21 8 7 24 24 N 1.34408 * 108.45211 * 179.86697 * 4 3 2 25 25 N 1.28753 * 109.52630 * 0.40507 * 24 4 3 26 26 N 1.34812 * 126.57849 * 89.99560 * 3 2 1 27 27 C 1.46491 * 126.60010 * 0.02562 * 26 3 2 28 28 C 1.52997 * 109.47298 * 89.99603 * 27 26 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 34 34 H 0.96993 * 120.00266 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.88247 * 215.58944 * 10 8 7 36 36 H 1.09003 * 109.88315 * 336.76037 * 10 8 7 37 37 H 0.97004 * 119.99779 * 179.97438 * 15 14 12 38 38 H 1.08995 * 110.36506 * 142.96815 * 20 11 10 39 39 H 1.09002 * 110.36398 * 265.18438 * 20 11 10 40 40 H 1.08996 * 109.47023 * 60.00420 * 22 21 8 41 41 H 1.09008 * 109.46697 * 180.02562 * 22 21 8 42 42 H 1.09001 * 109.46914 * 299.99412 * 22 21 8 43 43 H 1.09002 * 109.47359 * 60.00081 * 23 21 8 44 44 H 1.09007 * 109.47070 * 180.02562 * 23 21 8 45 45 H 1.09001 * 109.47320 * 299.99467 * 23 21 8 46 46 H 1.08999 * 109.47119 * 209.99978 * 27 26 3 47 47 H 1.09004 * 109.46600 * 329.99479 * 27 26 3 48 48 H 1.09009 * 109.46920 * 180.02562 * 28 27 26 49 49 H 1.08993 * 109.47099 * 299.99922 * 28 27 26 50 50 H 1.08999 * 109.47110 * 60.00757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3093 2.1862 -1.0970 5 6 2.1669 1.7621 -2.5027 6 8 1.7714 0.6421 -2.7627 7 7 2.4743 2.6165 -3.4988 8 6 2.3334 2.1952 -4.8948 9 1 2.5697 1.1365 -5.0023 10 6 0.9109 2.4925 -5.4139 11 7 0.9640 3.7818 -6.1186 12 6 -0.0890 4.3928 -6.7454 13 1 0.0533 5.3435 -7.2375 14 6 -1.3395 3.7901 -6.7482 15 7 -1.5131 2.6317 -6.1480 16 14 -2.7758 4.6232 -7.6038 17 1 -2.3216 5.9061 -8.1981 18 1 -3.2942 3.7373 -8.6770 19 1 -3.8536 4.8884 -6.6172 20 6 2.3391 4.3075 -6.0394 21 6 3.2329 3.0552 -5.8213 22 6 4.5432 3.4257 -5.1235 23 6 3.5030 2.3365 -7.1446 24 7 2.7302 3.3923 -0.6789 25 7 2.7405 3.4222 0.6082 26 7 2.3001 2.1783 1.0826 27 6 2.1592 1.7785 2.4848 28 6 3.4702 1.1588 2.9727 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.7894 3.5101 -3.2913 35 1 0.5952 1.7073 -6.1009 36 1 0.2164 2.5564 -4.5762 37 1 -2.3870 2.2108 -6.1497 38 1 2.6082 4.8078 -6.9696 39 1 2.4347 4.9945 -5.1985 40 1 5.0831 2.5168 -4.8580 41 1 5.1545 4.0288 -5.7950 42 1 4.3253 3.9960 -4.2205 43 1 2.5584 2.1456 -7.6539 44 1 4.1361 2.9612 -7.7748 45 1 4.0075 1.3905 -6.9480 46 1 1.9235 2.6537 3.0903 47 1 1.3559 1.0472 2.5751 48 1 3.3651 0.8609 4.0161 49 1 3.7058 0.2837 2.3674 50 1 4.2734 1.8901 2.8825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975039708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:30:20 Heat of formation + Delta-G solvation = 74.612579 kcal Electronic energy + Delta-G solvation = -30527.497194 eV Core-core repulsion = 26592.404749 eV Total energy + Delta-G solvation = -3935.092444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27069 -39.50166 -37.71611 -35.92697 -34.03404 -33.69863 -32.86900 -30.72070 -30.60818 -29.91178 -27.93257 -26.73403 -25.54884 -25.03563 -24.09026 -23.51660 -22.68093 -20.72603 -20.27692 -19.78851 -18.72238 -17.65560 -16.61748 -16.26682 -16.11371 -15.65492 -14.94448 -14.77339 -14.67362 -14.14089 -14.05549 -13.98769 -13.78556 -13.67937 -13.26779 -13.09914 -12.81156 -12.64566 -12.45589 -12.37387 -11.99708 -11.98944 -11.88812 -11.59840 -11.51544 -11.36865 -11.29846 -10.98979 -10.93958 -10.88836 -10.73939 -10.30714 -10.27109 -10.15672 -9.91519 -9.78768 -9.60267 -9.55767 -9.09345 -8.56613 -8.32286 -6.74364 -5.62257 -2.96180 1.13758 1.88691 1.94940 3.44623 3.49934 3.52517 3.54972 3.67905 4.13223 4.13927 4.43062 4.53882 4.56368 4.68852 4.77881 4.94023 5.03422 5.07024 5.12640 5.27441 5.36737 5.37720 5.41406 5.48639 5.58346 5.61214 5.70797 5.73698 5.85404 5.89655 6.01511 6.03144 6.12735 6.20262 6.23919 6.29335 6.35802 6.38520 6.47471 6.66084 6.71709 6.76171 6.84232 7.04542 7.62721 7.71766 7.87088 7.93450 8.13530 8.33173 8.65712 9.29523 9.90276 10.56256 11.48478 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.003483 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.773973 B = 8036.080489 C = 9067.504815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C 0.124 3.876 4 C -0.095 4.095 5 C 0.602 3.398 6 O -0.537 6.537 7 N -0.693 5.693 8 C 0.124 3.876 9 H 0.089 0.911 10 C 0.177 3.823 11 N -0.603 5.603 12 C -0.226 4.226 13 H 0.077 0.923 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 0.909 3.091 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.143 3.857 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.125 4.125 24 N -0.203 5.203 25 N -0.074 5.074 26 N -0.363 5.363 27 C 0.116 3.884 28 C -0.171 4.171 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.403 0.597 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.251 0.749 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.199 -5.919 16.616 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.013 4.013 4 C -0.235 4.235 5 C 0.385 3.615 6 O -0.414 6.414 7 N -0.342 5.342 8 C 0.020 3.980 9 H 0.107 0.893 10 C 0.051 3.949 11 N -0.329 5.329 12 C -0.354 4.354 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.566 5.566 16 Si 0.740 3.260 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.219 1.219 20 C 0.017 3.983 21 C -0.091 4.091 22 C -0.190 4.190 23 C -0.183 4.183 24 N -0.076 5.076 25 N -0.052 5.052 26 N -0.149 5.149 27 C -0.005 4.005 28 C -0.229 4.229 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.173 -5.333 16.797 20.867 hybrid contribution -1.096 0.070 -0.264 1.130 sum 10.076 -5.263 16.533 20.064 Atomic orbital electron populations 1.21681 0.92975 1.02863 1.02619 1.20480 0.97434 0.87233 1.05132 1.21940 0.96752 0.96303 0.86331 1.21377 1.14385 0.91928 0.95791 1.16647 0.77706 0.84840 0.82271 1.90750 1.47189 1.20075 1.83412 1.45802 1.65884 1.16670 1.05886 1.22528 0.98764 0.98257 0.78471 0.89263 1.21520 0.89144 0.88276 0.95960 1.44437 1.04138 1.20857 1.63473 1.19069 0.87082 1.02287 1.26955 0.90469 1.24793 0.97548 0.97237 1.00895 1.69975 1.22227 1.16746 1.47612 0.86081 0.82778 0.78388 0.78726 1.20595 1.21847 1.21924 1.21728 0.85683 0.92833 0.98101 1.22086 0.94185 0.97398 0.95427 1.21678 0.96398 1.00916 0.99960 1.21592 1.02184 0.98893 0.95595 1.74599 1.10966 1.17970 1.04022 1.81937 1.20562 0.99191 1.03555 1.50431 1.45887 1.11274 1.07323 1.21952 1.00030 1.02042 0.76452 1.22190 0.96622 1.01785 1.02285 0.91120 0.90959 0.93388 0.90691 0.86373 0.76101 0.92766 0.93383 0.93873 0.94118 0.96511 0.92910 0.92674 0.92802 0.91187 0.92912 0.93360 0.87643 0.88101 0.89831 0.91643 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.06 -0.68 5.44 -27.88 -0.15 -0.83 16 3 C 0.12 1.65 6.27 -81.87 -0.51 1.14 16 4 C -0.10 -1.57 6.99 -83.55 -0.58 -2.15 16 5 C 0.60 11.15 7.82 -12.47 -0.10 11.05 16 6 O -0.54 -10.79 14.40 5.29 0.08 -10.71 16 7 N -0.69 -12.76 4.51 -53.07 -0.24 -13.00 16 8 C 0.12 2.45 2.54 -66.10 -0.17 2.28 16 9 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 10 C 0.18 4.41 4.80 -3.06 -0.01 4.39 16 11 N -0.60 -15.40 3.38 -169.76 -0.57 -15.97 16 12 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 15 N -0.92 -27.58 10.31 55.49 0.57 -27.00 16 16 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 20 C 0.14 2.95 6.16 -2.26 -0.01 2.94 16 21 C -0.09 -1.55 0.84 -152.10 -0.13 -1.68 16 22 C -0.13 -1.86 8.23 37.16 0.31 -1.55 16 23 C -0.13 -2.04 8.58 37.16 0.32 -1.72 16 24 N -0.20 -3.39 12.04 32.85 0.40 -2.99 16 25 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 26 N -0.36 -4.25 3.63 -56.86 -0.21 -4.46 16 27 C 0.12 0.77 6.87 -4.05 -0.03 0.75 16 28 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.12 1.48 6.41 -51.93 -0.33 1.14 16 34 H 0.40 7.11 6.70 -40.82 -0.27 6.84 16 35 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 36 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.05 0.76 6.44 -51.93 -0.33 0.42 16 43 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.47 7.76 -51.93 -0.40 0.07 16 48 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -33.75 400.49 -7.06 -40.81 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.35 Total: 3.91 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.58 Total: 6.09 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: 0.78 Total: -63.70 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.75 -7.06 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975039708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.425 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds