Wall clock time and date at job start Sat Apr 11 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.36595 * 126.57488 * 269.68768 * 3 2 1 5 5 C 1.47526 * 125.77486 * 0.02562 * 4 3 2 6 6 O 1.21591 * 119.99587 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99785 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99754 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.63875 * 325.70771 * 8 7 5 10 10 C 1.54323 * 110.71667 * 88.84436 * 8 7 5 11 11 N 1.47023 * 107.27045 * 96.17265 * 10 8 7 12 12 C 1.36934 * 125.65476 * 178.90614 * 11 10 8 13 13 H 1.07996 * 120.00407 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99195 * 0.02562 * 12 11 10 15 15 N 1.31611 * 120.00421 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99483 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47383 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47229 * 120.00084 * 16 14 12 19 19 H 1.48503 * 109.47363 * 239.99966 * 16 14 12 20 20 C 1.47434 * 108.70208 * 358.94039 * 11 10 8 21 21 C 1.55150 * 110.72136 * 202.56488 * 8 7 5 22 22 C 1.53001 * 111.00419 * 35.21491 * 21 8 7 23 23 C 1.52998 * 111.00308 * 159.06739 * 21 8 7 24 24 N 1.34408 * 108.45211 * 179.86697 * 4 3 2 25 25 N 1.28753 * 109.52630 * 0.40507 * 24 4 3 26 26 N 1.34812 * 126.57849 * 89.99560 * 3 2 1 27 27 C 1.46491 * 126.60010 * 0.02562 * 26 3 2 28 28 C 1.52997 * 109.47298 * 89.99603 * 27 26 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 34 34 H 0.96993 * 120.00266 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.88247 * 215.58944 * 10 8 7 36 36 H 1.09003 * 109.88315 * 336.76037 * 10 8 7 37 37 H 0.97004 * 119.99779 * 179.97438 * 15 14 12 38 38 H 1.08995 * 110.36506 * 142.96815 * 20 11 10 39 39 H 1.09002 * 110.36398 * 265.18438 * 20 11 10 40 40 H 1.08996 * 109.47023 * 60.00420 * 22 21 8 41 41 H 1.09008 * 109.46697 * 180.02562 * 22 21 8 42 42 H 1.09001 * 109.46914 * 299.99412 * 22 21 8 43 43 H 1.09002 * 109.47359 * 60.00081 * 23 21 8 44 44 H 1.09007 * 109.47070 * 180.02562 * 23 21 8 45 45 H 1.09001 * 109.47320 * 299.99467 * 23 21 8 46 46 H 1.08999 * 109.47119 * 209.99978 * 27 26 3 47 47 H 1.09004 * 109.46600 * 329.99479 * 27 26 3 48 48 H 1.09009 * 109.46920 * 180.02562 * 28 27 26 49 49 H 1.08993 * 109.47099 * 299.99922 * 28 27 26 50 50 H 1.08999 * 109.47110 * 60.00757 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3093 2.1862 -1.0970 5 6 2.1669 1.7621 -2.5027 6 8 1.7714 0.6421 -2.7627 7 7 2.4743 2.6165 -3.4988 8 6 2.3334 2.1952 -4.8948 9 1 2.5697 1.1365 -5.0023 10 6 0.9109 2.4925 -5.4139 11 7 0.9640 3.7818 -6.1186 12 6 -0.0890 4.3928 -6.7454 13 1 0.0533 5.3435 -7.2375 14 6 -1.3395 3.7901 -6.7482 15 7 -1.5131 2.6317 -6.1480 16 14 -2.7758 4.6232 -7.6038 17 1 -2.3216 5.9061 -8.1981 18 1 -3.2942 3.7373 -8.6770 19 1 -3.8536 4.8884 -6.6172 20 6 2.3391 4.3075 -6.0394 21 6 3.2329 3.0552 -5.8213 22 6 4.5432 3.4257 -5.1235 23 6 3.5030 2.3365 -7.1446 24 7 2.7302 3.3923 -0.6789 25 7 2.7405 3.4222 0.6082 26 7 2.3001 2.1783 1.0826 27 6 2.1592 1.7785 2.4848 28 6 3.4702 1.1588 2.9727 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.7894 3.5101 -3.2913 35 1 0.5952 1.7073 -6.1009 36 1 0.2164 2.5564 -4.5762 37 1 -2.3870 2.2108 -6.1497 38 1 2.6082 4.8078 -6.9696 39 1 2.4347 4.9945 -5.1985 40 1 5.0831 2.5168 -4.8580 41 1 5.1545 4.0288 -5.7950 42 1 4.3253 3.9960 -4.2205 43 1 2.5584 2.1456 -7.6539 44 1 4.1361 2.9612 -7.7748 45 1 4.0075 1.3905 -6.9480 46 1 1.9235 2.6537 3.0903 47 1 1.3559 1.0472 2.5751 48 1 3.3651 0.8609 4.0161 49 1 3.7058 0.2837 2.3674 50 1 4.2734 1.8901 2.8825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975039708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:30:19 Heat of formation + Delta-G solvation = 51.371188 kcal Electronic energy + Delta-G solvation = -30528.505016 eV Core-core repulsion = 26592.404749 eV Total energy + Delta-G solvation = -3936.100267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.36900 -41.06199 -39.28921 -36.81450 -35.68284 -34.82433 -34.40658 -32.59731 -31.50516 -31.07599 -29.61554 -28.04161 -27.41313 -26.01601 -25.33223 -24.70155 -23.98266 -22.24949 -21.39641 -21.33208 -20.20494 -18.87335 -18.66861 -17.42416 -17.23254 -17.03050 -16.66283 -15.83076 -15.80140 -15.73024 -15.41260 -15.37294 -15.12416 -14.81006 -14.73775 -14.04683 -13.88683 -13.78710 -13.76398 -13.44770 -13.38221 -13.15090 -13.13543 -12.94339 -12.82341 -12.70972 -12.70118 -12.57636 -12.33398 -12.24626 -12.06507 -11.86824 -11.82858 -11.73157 -11.51012 -11.28899 -11.19826 -11.06171 -10.73407 -10.30264 -9.90341 -8.87211 -7.81713 -5.18116 0.09019 0.60762 1.07038 1.44122 1.45482 1.55796 2.12992 2.29379 2.49891 3.12772 3.35602 3.38013 3.50470 3.52255 3.70401 3.75198 3.95919 3.97776 4.08887 4.14261 4.25219 4.28049 4.38038 4.40412 4.51109 4.54669 4.61157 4.73218 4.75145 4.86773 4.88194 4.91169 4.92322 4.96359 5.05262 5.12615 5.16625 5.18319 5.18713 5.28456 5.32998 5.35542 5.47115 5.52144 5.58003 5.73153 5.76938 6.19416 6.48003 6.89469 7.10151 7.19882 7.79147 8.44123 9.27611 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.003483 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.773973 B = 8036.080489 C = 9067.504815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C 0.135 3.865 4 C -0.127 4.127 5 C 0.598 3.402 6 O -0.560 6.560 7 N -0.691 5.691 8 C 0.138 3.862 9 H 0.088 0.912 10 C 0.195 3.805 11 N -0.620 5.620 12 C -0.236 4.236 13 H 0.085 0.915 14 C -0.069 4.069 15 N -0.951 5.951 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.292 1.292 19 H -0.297 1.297 20 C 0.137 3.863 21 C -0.074 4.074 22 C -0.124 4.124 23 C -0.121 4.121 24 N -0.225 5.225 25 N -0.088 5.088 26 N -0.346 5.346 27 C 0.101 3.899 28 C -0.165 4.165 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.407 0.593 35 H 0.013 0.987 36 H -0.002 1.002 37 H 0.243 0.757 38 H 0.050 0.950 39 H 0.022 0.978 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.033 0.967 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.114 0.886 49 H 0.064 0.936 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.899 -5.888 18.461 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.004 4.004 4 C -0.267 4.267 5 C 0.384 3.616 6 O -0.439 6.439 7 N -0.341 5.341 8 C 0.032 3.968 9 H 0.106 0.894 10 C 0.069 3.931 11 N -0.346 5.346 12 C -0.365 4.365 13 H 0.103 0.897 14 C -0.262 4.262 15 N -0.600 5.600 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.219 1.219 19 H -0.224 1.224 20 C 0.012 3.988 21 C -0.076 4.076 22 C -0.181 4.181 23 C -0.179 4.179 24 N -0.098 5.098 25 N -0.067 5.067 26 N -0.132 5.132 27 C -0.018 4.018 28 C -0.223 4.223 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.244 0.756 35 H 0.031 0.969 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.137 0.863 47 H 0.149 0.851 48 H 0.133 0.867 49 H 0.083 0.917 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.923 -5.259 18.674 23.310 hybrid contribution -1.639 0.044 -0.712 1.787 sum 11.284 -5.215 17.961 21.843 Atomic orbital electron populations 1.21658 0.92998 1.03819 1.01337 1.20571 0.97186 0.85692 1.06432 1.22262 0.95218 0.97043 0.85872 1.21232 1.17025 0.93047 0.95365 1.17001 0.76830 0.84508 0.83287 1.90726 1.48054 1.21024 1.84062 1.45703 1.66053 1.16983 1.05322 1.22194 0.96007 0.98813 0.79742 0.89416 1.21090 0.91512 0.87264 0.93240 1.44686 1.05802 1.21036 1.63091 1.19494 0.88051 1.02506 1.26439 0.89733 1.25663 1.00335 0.98042 1.02176 1.70235 1.22148 1.18333 1.49280 0.85019 0.79119 0.77950 0.77312 1.18735 1.21909 1.22416 1.21957 0.83843 0.94398 0.98583 1.22062 0.94842 0.94959 0.95691 1.21633 0.94432 1.02007 1.00045 1.21576 1.01004 1.00431 0.94868 1.74556 1.11924 1.18385 1.04946 1.81817 1.21030 1.00910 1.02919 1.50790 1.43766 1.09811 1.08798 1.22578 1.01985 1.03615 0.73616 1.22187 0.95028 1.01034 1.04065 0.89095 0.95526 0.91294 0.86038 0.88358 0.75571 0.96897 0.98378 0.94741 0.93167 0.96052 0.91524 0.90180 0.92825 0.94793 0.90328 0.91259 0.86319 0.85131 0.86739 0.91733 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.89 71.98 0.71 -2.17 16 2 C -0.06 -1.18 5.44 29.85 0.16 -1.02 16 3 C 0.14 3.49 6.27 41.72 0.26 3.75 16 4 C -0.13 -4.26 6.99 40.82 0.29 -3.98 16 5 C 0.60 23.17 7.82 86.69 0.68 23.85 16 6 O -0.56 -23.71 14.40 -4.00 -0.06 -23.77 16 7 N -0.69 -26.35 4.51 -440.08 -1.98 -28.34 16 8 C 0.14 5.62 2.54 46.18 0.12 5.74 16 9 H 0.09 3.61 7.53 -2.39 -0.02 3.59 16 10 C 0.20 10.41 4.80 86.73 0.42 10.83 16 11 N -0.62 -32.87 3.38 -691.00 -2.34 -35.21 16 12 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 13 H 0.08 4.65 7.83 -2.91 -0.02 4.62 16 14 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 15 N -0.95 -60.42 10.31 21.65 0.22 -60.20 16 16 Si 0.98 47.76 29.55 68.60 2.03 49.78 16 17 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 C 0.14 5.65 6.16 87.02 0.54 6.19 16 21 C -0.07 -2.51 0.84 -50.62 -0.04 -2.55 16 22 C -0.12 -3.17 8.23 71.98 0.59 -2.58 16 23 C -0.12 -3.81 8.58 71.98 0.62 -3.19 16 24 N -0.23 -7.62 12.04 -49.99 -0.60 -8.22 16 25 N -0.09 -2.57 13.78 37.02 0.51 -2.06 16 26 N -0.35 -7.50 3.63 -333.79 -1.21 -8.71 16 27 C 0.10 1.00 6.87 86.38 0.59 1.59 16 28 C -0.17 -1.17 10.24 71.98 0.74 -0.44 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.12 1.28 7.82 -2.39 -0.02 1.26 16 33 H 0.10 2.44 6.41 -2.39 -0.02 2.42 16 34 H 0.41 14.70 6.70 -92.71 -0.62 14.08 16 35 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 36 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 37 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 39 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.05 1.40 6.44 -2.39 -0.02 1.38 16 43 H 0.03 1.30 7.91 -2.39 -0.02 1.28 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.13 0.60 7.76 -2.39 -0.02 0.58 16 48 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -80.13 400.49 3.88 -76.25 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.31 Total: 20.90 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 7.00 Total: 19.58 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -5.40 Total: -142.74 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -80.13 3.88 -76.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975039708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.620 kcal (2) G-P(sol) polarization free energy of solvation -80.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds