Wall clock time and date at job start Sat Apr 11 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36601 * 126.58376 * 2 1 4 4 C 1.47524 * 125.76873 * 359.97438 * 3 2 1 5 5 O 1.21591 * 119.99774 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99759 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65198 * 4.59953 * 6 4 3 8 8 C 1.54909 * 104.83510 * 204.14832 * 7 6 4 9 9 C 1.55164 * 101.58004 * 322.98920 * 8 7 6 10 10 C 1.47032 * 125.64822 * 184.61761 * 6 4 3 11 11 H 1.09001 * 110.00311 * 59.43204 * 10 6 4 12 12 C 1.53000 * 109.88137 * 298.34222 * 10 6 4 13 13 N 1.46505 * 109.46866 * 175.44413 * 12 10 6 14 14 C 1.46500 * 119.99671 * 267.34436 * 13 12 10 15 15 C 1.36937 * 120.00100 * 87.34689 * 13 12 10 16 16 H 1.08003 * 119.99470 * 3.55470 * 15 13 12 17 17 C 1.38802 * 119.99847 * 183.55609 * 15 13 12 18 18 N 1.31622 * 120.00402 * 352.83134 * 17 15 13 19 19 Si 1.86802 * 119.99926 * 172.83255 * 17 15 13 20 20 H 1.48500 * 109.47279 * 269.99878 * 19 17 15 21 21 H 1.48500 * 109.46952 * 30.00034 * 19 17 15 22 22 H 1.48503 * 109.47140 * 149.99768 * 19 17 15 23 23 N 1.34402 * 108.45878 * 180.26580 * 3 2 1 24 24 N 1.28759 * 109.52089 * 359.58309 * 23 3 2 25 25 N 1.34818 * 126.57801 * 180.02562 * 2 1 3 26 26 C 1.46500 * 126.59653 * 359.94241 * 25 2 1 27 27 C 1.52995 * 109.47247 * 120.00014 * 26 25 2 28 28 C 1.53001 * 109.47160 * 240.00532 * 26 25 2 29 29 H 1.08999 * 109.47244 * 89.97177 * 1 2 3 30 30 H 1.08998 * 109.47198 * 209.97904 * 1 2 3 31 31 H 1.09001 * 109.47069 * 329.97742 * 1 2 3 32 32 H 1.09004 * 110.37000 * 85.30633 * 7 6 4 33 33 H 1.09007 * 110.45689 * 323.03087 * 7 6 4 34 34 H 1.08999 * 111.00718 * 204.91819 * 8 7 6 35 35 H 1.09000 * 111.00433 * 81.05974 * 8 7 6 36 36 H 1.09002 * 110.71440 * 277.13860 * 9 8 7 37 37 H 1.08997 * 110.87493 * 153.93829 * 9 8 7 38 38 H 1.08994 * 109.46967 * 55.44084 * 12 10 6 39 39 H 1.08997 * 109.46646 * 295.43978 * 12 10 6 40 40 H 1.09001 * 109.47232 * 242.04982 * 14 13 12 41 41 H 1.09003 * 109.47094 * 2.05078 * 14 13 12 42 42 H 1.09002 * 109.46722 * 122.04483 * 14 13 12 43 43 H 0.96995 * 120.00699 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.46542 * 359.97438 * 26 25 2 45 45 H 1.09004 * 109.47161 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.46951 * 300.00369 * 27 26 25 47 47 H 1.08999 * 109.47602 * 59.99970 * 27 26 25 48 48 H 1.08995 * 109.47617 * 59.99275 * 28 26 25 49 49 H 1.08997 * 109.47296 * 179.97438 * 28 26 25 50 50 H 1.09007 * 109.46434 * 299.99573 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6861 2.7628 -0.0006 6 7 2.7818 3.4986 0.0000 7 6 4.2432 3.3291 -0.0948 8 6 4.8335 4.6059 0.5541 9 6 3.8254 5.6882 0.0853 10 6 2.4790 4.9342 0.0958 11 1 1.9452 5.1416 1.0232 12 6 1.6303 5.3679 -1.1011 13 7 1.2428 6.7718 -0.9418 14 6 -0.0291 7.1122 -0.2994 15 6 2.0694 7.7658 -1.3933 16 1 2.9794 7.5144 -1.9180 17 6 1.7378 9.0961 -1.1768 18 7 0.5657 9.4073 -0.6651 19 14 2.9549 10.4448 -1.6116 20 1 3.8202 10.7278 -0.4384 21 1 3.7967 10.0029 -2.7524 22 1 2.2154 11.6758 -1.9898 23 7 3.5984 0.6788 -0.0059 24 7 3.6298 -0.6084 -0.0008 25 7 2.3103 -1.0827 -0.0005 26 6 1.8863 -2.4849 0.0001 27 6 2.4280 -3.1821 -1.2494 28 6 2.4299 -3.1817 1.2490 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 4.5499 3.2575 -1.1384 33 1 4.5604 2.4429 0.4548 34 1 5.8334 4.8118 0.1722 35 1 4.8413 4.5239 1.6410 36 1 4.0677 6.0308 -0.9207 37 1 3.8035 6.5263 0.7818 38 1 0.7355 4.7479 -1.1556 39 1 2.2089 5.2525 -2.0175 40 1 -0.6642 7.6424 -1.0091 41 1 -0.5289 6.1990 0.0237 42 1 0.1595 7.7485 0.5653 43 1 0.3338 10.3369 -0.5142 44 1 0.7974 -2.5351 0.0014 45 1 2.1121 -4.2253 -1.2492 46 1 2.0406 -2.6856 -2.1392 47 1 3.5168 -3.1318 -1.2504 48 1 2.0441 -2.6850 2.1392 49 1 2.1141 -4.2249 1.2497 50 1 3.5188 -3.1313 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485073718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:32:12 Heat of formation + Delta-G solvation = 75.000708 kcal Electronic energy + Delta-G solvation = -30151.844153 eV Core-core repulsion = 26216.768540 eV Total energy + Delta-G solvation = -3935.075614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.34995 -40.98592 -38.64344 -37.39980 -37.10806 -34.01815 -33.54184 -32.77124 -31.71771 -30.49357 -28.77388 -28.26813 -27.97155 -26.75829 -25.22974 -24.80414 -23.15003 -22.77904 -21.53939 -21.25943 -20.01305 -18.85480 -18.33395 -17.58930 -17.25935 -17.11410 -16.77488 -16.16585 -15.48602 -15.43927 -15.33124 -15.22042 -15.02896 -14.56249 -14.31537 -14.23060 -14.08896 -13.98298 -13.84109 -13.62363 -13.43640 -13.20213 -13.18283 -12.97749 -12.79489 -12.76462 -12.62276 -12.52451 -12.50601 -12.28107 -12.04046 -12.00456 -11.87148 -11.68805 -11.47983 -11.41629 -11.13027 -10.95070 -10.60940 -10.22759 -9.68772 -8.86627 -7.69456 -5.13705 0.11548 0.62673 1.04508 1.49751 1.51256 1.59454 1.95123 2.21851 2.55761 3.12287 3.27510 3.39383 3.50864 3.65867 3.69054 3.82070 3.87314 3.91574 3.98872 4.10520 4.12194 4.32476 4.44750 4.51356 4.55081 4.59352 4.62878 4.64518 4.70685 4.76129 4.82174 4.82983 4.88801 4.94334 5.03119 5.10872 5.13643 5.15774 5.19034 5.21119 5.24644 5.42582 5.49597 5.56083 5.58197 5.66762 5.84191 6.32350 6.53814 6.85836 7.13760 7.20551 7.90990 8.33676 9.30032 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002696 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.960218 B =10384.375580 C =11102.520084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.130 3.870 3 C -0.125 4.125 4 C 0.607 3.393 5 O -0.563 6.563 6 N -0.600 5.600 7 C 0.102 3.898 8 C -0.124 4.124 9 C -0.104 4.104 10 C 0.128 3.872 11 H 0.045 0.955 12 C 0.156 3.844 13 N -0.620 5.620 14 C 0.190 3.810 15 C -0.238 4.238 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.268 1.268 22 H -0.300 1.300 23 N -0.218 5.218 24 N -0.083 5.083 25 N -0.344 5.344 26 C 0.131 3.869 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.012 0.988 41 H 0.008 0.992 42 H 0.022 0.978 43 H 0.243 0.757 44 H 0.140 0.860 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -29.431 2.881 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.264 4.264 4 C 0.395 3.605 5 O -0.442 6.442 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.162 4.162 9 C -0.142 4.142 10 C 0.022 3.978 11 H 0.063 0.937 12 C 0.028 3.972 13 N -0.344 5.344 14 C 0.046 3.954 15 C -0.367 4.367 16 H 0.102 0.898 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.800 3.200 20 H -0.211 1.211 21 H -0.193 1.193 22 H -0.227 1.227 23 N -0.091 5.091 24 N -0.062 5.062 25 N -0.131 5.131 26 C 0.032 3.968 27 C -0.216 4.216 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.157 0.843 45 H 0.131 0.869 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.358 -29.659 2.885 30.277 hybrid contribution -0.650 1.558 -0.155 1.696 sum 4.708 -28.101 2.730 28.623 Atomic orbital electron populations 1.20805 0.82768 1.06060 1.05567 1.22244 0.97303 0.85875 0.95438 1.21058 0.89889 0.94726 1.20747 1.16715 0.84563 0.82799 0.76433 1.90743 1.16566 1.83830 1.53096 1.48472 1.08270 1.05729 1.70705 1.22629 0.77920 0.99947 1.01531 1.22850 0.99426 0.92842 1.01038 1.22438 0.92299 0.97167 1.02326 1.22260 0.97914 0.78545 0.99053 0.93695 1.21029 0.96805 0.84281 0.95070 1.44198 1.20063 1.00989 1.69197 1.20683 0.85693 0.93241 0.95829 1.19630 1.01910 0.86199 1.28979 0.89815 1.25653 0.98708 0.99514 1.01925 1.70445 1.21301 1.16268 1.52044 0.85185 0.78249 0.78639 0.77954 1.21150 1.19273 1.22708 1.74597 1.19187 1.04516 1.10775 1.81794 0.98066 1.03020 1.23322 1.50934 1.05130 1.08372 1.48692 1.22206 1.02391 0.73062 0.99154 1.22158 1.02109 1.02448 0.94916 1.22165 1.02125 1.02460 0.94908 0.87935 0.86981 0.89118 0.91314 0.88097 0.87520 0.90470 0.91114 0.91487 0.93871 0.94201 0.96981 0.97371 0.95919 0.94749 0.84259 0.86862 0.92478 0.92298 0.92391 0.86871 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.41 71.23 0.67 -0.85 16 2 C 0.13 2.92 7.02 41.72 0.29 3.21 16 3 C -0.12 -3.70 6.84 40.82 0.28 -3.42 16 4 C 0.61 21.63 7.66 86.69 0.66 22.29 16 5 O -0.56 -22.57 13.53 -4.00 -0.05 -22.62 16 6 N -0.60 -21.06 3.06 -791.77 -2.43 -23.49 16 7 C 0.10 2.91 6.28 86.85 0.55 3.46 16 8 C -0.12 -3.27 7.09 31.99 0.23 -3.05 16 9 C -0.10 -3.69 5.47 31.78 0.17 -3.52 16 10 C 0.13 5.12 3.15 45.34 0.14 5.26 16 11 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 12 C 0.16 7.15 5.17 86.38 0.45 7.60 16 13 N -0.62 -33.19 2.90 -726.93 -2.11 -35.30 16 14 C 0.19 10.52 8.99 127.77 1.15 11.67 16 15 C -0.24 -13.14 8.63 84.03 0.73 -12.41 16 16 H 0.08 4.39 6.90 -2.91 -0.02 4.37 16 17 C -0.07 -3.75 5.44 84.86 0.46 -3.28 16 18 N -0.95 -57.85 9.46 21.65 0.20 -57.64 16 19 Si 0.97 45.84 29.56 68.60 2.03 47.87 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 N -0.22 -6.28 9.32 -49.99 -0.47 -6.75 16 24 N -0.08 -2.08 13.67 37.02 0.51 -1.57 16 25 N -0.34 -6.45 3.28 -313.40 -1.03 -7.47 16 26 C 0.13 1.16 3.68 44.99 0.17 1.33 16 27 C -0.16 -1.18 9.47 71.98 0.68 -0.50 16 28 C -0.16 -1.14 9.47 71.98 0.68 -0.46 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.11 0.88 7.18 -2.39 -0.02 0.86 16 31 H 0.09 2.02 6.43 -2.39 -0.02 2.00 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 2.78 5.87 -2.38 -0.01 2.77 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 2.63 6.57 -2.39 -0.02 2.61 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.04 2.08 6.32 -2.39 -0.02 2.06 16 39 H 0.04 1.81 7.95 -2.39 -0.02 1.79 16 40 H 0.01 0.70 7.18 -2.39 -0.02 0.69 16 41 H 0.01 0.40 7.78 -2.39 -0.02 0.38 16 42 H 0.02 1.33 6.89 -2.39 -0.02 1.31 16 43 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.14 0.43 6.78 -2.39 -0.02 0.41 16 45 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 49 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -74.49 391.73 4.90 -69.59 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.93 Total: 10.05 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 7.31 Total: 27.33 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.32 Total: -132.22 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.49 4.90 -69.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485073718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.593 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds