Wall clock time and date at job start Sat Apr 11 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 C 1.53001 * 109.47187 * 119.99847 * 2 1 3 5 5 C 1.53001 * 109.47035 * 175.00094 * 4 2 1 6 6 H 1.09008 * 109.47105 * 55.00059 * 5 4 2 7 7 C 1.52997 * 109.47049 * 174.99875 * 5 4 2 8 8 N 1.46506 * 109.47289 * 174.99938 * 7 5 4 9 9 C 1.36930 * 120.00258 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00439 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99225 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00268 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46935 * 90.00259 * 13 11 9 15 15 H 1.48507 * 109.47218 * 210.00042 * 13 11 9 16 16 H 1.48492 * 109.47204 * 330.00019 * 13 11 9 17 17 N 1.46500 * 109.47196 * 295.00088 * 5 4 2 18 18 C 1.34772 * 120.00014 * 84.99784 * 17 5 4 19 19 O 1.21281 * 120.00299 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99783 * 179.97438 * 18 17 5 21 21 H 1.09003 * 109.45596 * 60.05203 * 20 18 17 22 22 C 1.53149 * 109.45142 * 180.02562 * 20 18 17 23 23 C 1.53459 * 109.30627 * 189.46253 * 22 20 18 24 24 C 1.50799 * 108.13501 * 311.28923 * 23 22 20 25 25 N 1.29842 * 128.52358 * 195.90483 * 24 23 22 26 26 N 1.28905 * 109.47886 * 179.90211 * 25 24 23 27 27 C 1.30836 * 109.74206 * 0.02787 * 26 25 24 28 28 N 1.34693 * 107.07073 * 0.02960 * 27 26 25 29 29 C 1.46261 * 128.84778 * 179.87254 * 28 27 26 30 30 H 1.09002 * 109.47260 * 299.99892 * 1 2 3 31 31 H 1.08997 * 109.47042 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47260 * 240.00108 * 2 1 3 34 34 H 1.09001 * 109.46912 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46647 * 299.99585 * 3 2 1 36 36 H 1.08997 * 109.47262 * 60.00437 * 3 2 1 37 37 H 1.08992 * 109.46939 * 55.00133 * 4 2 1 38 38 H 1.09002 * 109.47368 * 294.99833 * 4 2 1 39 39 H 1.09001 * 109.47289 * 54.99809 * 7 5 4 40 40 H 1.09004 * 109.47261 * 295.00065 * 7 5 4 41 41 H 0.97001 * 119.99251 * 0.02562 * 8 7 5 42 42 H 0.97000 * 119.99950 * 179.97438 * 12 11 9 43 43 H 0.96994 * 119.99416 * 265.00201 * 17 5 4 44 44 H 1.08997 * 109.49969 * 309.41354 * 22 20 18 45 45 H 1.09004 * 109.49624 * 69.51307 * 22 20 18 46 46 H 1.09003 * 109.72990 * 70.94785 * 23 22 20 47 47 H 1.09000 * 109.73342 * 191.62848 * 23 22 20 48 48 H 1.08001 * 126.46773 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.58965 * 77.35380 * 29 28 27 50 50 H 1.08995 * 109.59554 * 316.89299 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 3.9954 0.1613 1.0527 7 6 4.0852 -1.4392 2.4918 8 7 5.5305 -1.6549 2.3875 9 6 6.2200 -2.1945 3.4403 10 1 5.6983 -2.4615 4.3475 11 6 7.5894 -2.3994 3.3413 12 7 8.2250 -2.0744 2.2356 13 14 8.5301 -3.1348 4.7778 14 1 8.5505 -4.6142 4.6506 15 1 9.9225 -2.6184 4.7741 16 1 7.8652 -2.7565 6.0505 17 7 3.9480 -1.6871 0.0626 18 6 4.0652 -1.1630 -1.1735 19 8 3.8539 0.0175 -1.3542 20 6 4.4598 -2.0436 -2.3310 21 1 3.7227 -2.8376 -2.4509 22 6 4.5206 -1.2058 -3.6116 23 6 4.6881 -2.1372 -4.8197 24 6 5.8060 -3.1028 -4.5165 25 7 6.4639 -3.8623 -5.3389 26 7 7.3445 -4.5409 -4.6864 27 6 7.2817 -4.2393 -3.4149 28 7 6.3056 -3.3219 -3.2738 29 6 5.8354 -2.6624 -2.0559 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -1.7197 1.2952 38 1 1.7517 -0.1583 2.1370 39 1 3.5877 -2.3922 2.6722 40 1 3.8780 -0.7592 3.3182 41 1 5.9990 -1.4154 1.5726 42 1 9.1820 -2.2171 2.1664 43 1 4.1173 -2.6311 0.2072 44 1 3.5980 -0.6352 -3.7172 45 1 5.3679 -0.5221 -3.5591 46 1 3.7629 -2.6875 -4.9911 47 1 4.9377 -1.5513 -5.7043 48 1 7.8964 -4.6487 -2.6269 49 1 6.5378 -1.8796 -1.7697 50 1 5.7528 -3.3943 -1.2525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714945708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:32:07 Heat of formation + Delta-G solvation = 37.519790 kcal Electronic energy + Delta-G solvation = -30497.776584 eV Core-core repulsion = 26561.075676 eV Total energy + Delta-G solvation = -3936.700908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.30151 -40.38603 -37.65218 -36.32699 -35.10456 -33.80048 -33.54489 -31.72988 -30.86595 -29.47707 -28.81845 -27.00315 -25.71303 -25.17019 -23.69329 -22.89392 -22.27627 -21.26198 -20.45122 -19.81884 -19.53787 -17.68008 -17.19060 -17.04101 -16.35042 -15.89275 -15.85263 -15.24679 -14.77255 -14.56384 -14.46136 -14.24444 -14.07812 -13.88001 -13.73525 -13.36182 -13.14582 -13.00202 -12.47956 -12.40222 -12.18926 -12.13956 -11.89995 -11.64961 -11.60855 -11.42253 -11.23797 -11.15424 -11.09344 -10.92421 -10.66037 -10.39787 -10.36885 -10.34478 -10.15507 -10.12810 -9.85931 -9.67285 -9.18478 -9.05916 -8.81724 -7.11611 -5.93735 -3.23049 1.82399 2.32348 2.68098 2.87450 3.19155 3.32717 3.39444 3.40531 4.00631 4.22266 4.30381 4.36965 4.44744 4.73086 4.81205 4.86105 4.94280 5.02776 5.05687 5.06886 5.10675 5.32482 5.38527 5.40176 5.46804 5.52007 5.55023 5.58952 5.73110 5.75475 5.83689 5.89397 5.90315 5.91499 5.99004 6.01145 6.05594 6.14192 6.16702 6.31025 6.34778 6.51576 6.53843 6.70443 6.77010 6.81574 7.55231 7.61661 8.24520 8.28246 8.71927 9.37285 9.90972 10.26719 11.28613 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006941 B = 0.004920 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.761665 B = 5690.043765 C = 9269.336896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.136 3.864 6 H 0.093 0.907 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.932 5.932 13 Si 0.907 3.093 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.522 3.478 19 O -0.523 6.523 20 C -0.122 4.122 21 H 0.106 0.894 22 C -0.105 4.105 23 C -0.033 4.033 24 C 0.172 3.828 25 N -0.297 5.297 26 N -0.307 5.307 27 C 0.162 3.838 28 N -0.467 5.467 29 C 0.113 3.887 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.403 0.597 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.221 0.779 49 H 0.105 0.895 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 1.395 -8.715 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.162 4.162 5 C 0.031 3.969 6 H 0.110 0.890 7 C 0.015 3.985 8 N -0.375 5.375 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.207 1.207 17 N -0.357 5.357 18 C 0.306 3.694 19 O -0.400 6.400 20 C -0.144 4.144 21 H 0.124 0.876 22 C -0.144 4.144 23 C -0.072 4.072 24 C -0.096 4.096 25 N -0.137 5.137 26 N -0.146 5.146 27 C -0.126 4.126 28 N -0.157 5.157 29 C -0.010 4.010 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.237 0.763 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.121 0.879 48 H 0.237 0.763 49 H 0.123 0.877 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.709 1.523 -9.905 16.185 hybrid contribution 0.581 -0.373 2.125 2.234 sum -12.128 1.150 -7.781 14.455 Atomic orbital electron populations 1.21873 0.96363 1.00954 1.01243 1.21134 0.94209 0.97230 0.98421 1.21836 1.02997 0.94947 0.99777 1.22024 0.94997 1.00636 0.98508 1.21418 0.93996 0.95584 0.85875 0.88955 1.20980 0.86985 0.97391 0.93154 1.42315 1.01428 1.76113 1.17690 1.19209 0.90422 1.33436 0.94366 0.91155 1.24710 0.96512 1.01875 0.97457 1.69636 1.08689 1.53588 1.26153 0.86204 0.79432 0.78756 0.81857 1.21678 1.21725 1.20738 1.46031 1.69044 1.13379 1.07249 1.19927 0.77499 0.88398 0.83582 1.90720 1.49666 1.15562 1.84050 1.21688 0.97152 0.99501 0.96034 0.87643 1.21548 1.05283 0.97057 0.90479 1.20251 0.93401 0.93878 0.99679 1.24815 1.01202 1.02049 0.81565 1.74029 1.05673 1.07780 1.26172 1.74475 1.17195 1.21089 1.01853 1.26382 0.94186 0.93557 0.98442 1.46139 1.28008 1.32295 1.09288 1.22019 0.95669 0.98769 0.84576 0.93084 0.93191 0.93336 0.90830 0.90569 0.93795 0.94255 0.91962 0.91067 0.95795 0.94835 0.78163 0.93455 0.76262 0.88564 0.90201 0.88762 0.87931 0.76257 0.87731 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.09 -1.05 2.38 -90.62 -0.22 -1.26 16 3 C -0.14 -1.72 8.04 37.16 0.30 -1.42 16 4 C -0.12 -1.42 4.36 -26.73 -0.12 -1.54 16 5 C 0.14 1.87 2.33 -67.93 -0.16 1.71 16 6 H 0.09 1.48 5.92 -51.92 -0.31 1.17 16 7 C 0.14 2.43 5.82 -4.04 -0.02 2.41 16 8 N -0.73 -16.08 5.43 -59.90 -0.33 -16.41 16 9 C -0.24 -6.18 9.99 -15.06 -0.15 -6.33 16 10 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -25.74 13.06 55.49 0.72 -25.01 16 13 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 N -0.71 -8.62 4.37 -53.81 -0.24 -8.85 16 18 C 0.52 6.17 5.69 -10.99 -0.06 6.11 16 19 O -0.52 -7.36 10.79 5.56 0.06 -7.30 16 20 C -0.12 -1.15 2.54 -91.53 -0.23 -1.39 16 21 H 0.11 0.84 8.12 -51.93 -0.42 0.42 16 22 C -0.11 -0.96 4.68 -26.42 -0.12 -1.08 16 23 C -0.03 -0.29 6.34 -27.60 -0.17 -0.46 16 24 C 0.17 2.19 7.75 -155.30 -1.20 0.98 16 25 N -0.30 -4.69 12.21 32.76 0.40 -4.29 16 26 N -0.31 -4.92 12.23 29.58 0.36 -4.56 16 27 C 0.16 2.13 12.83 -90.41 -1.16 0.97 16 28 N -0.47 -5.67 3.11 -115.52 -0.36 -6.03 16 29 C 0.11 1.21 6.14 -4.01 -0.02 1.18 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.91 5.19 -51.93 -0.27 0.64 16 34 H 0.08 1.10 4.76 -51.93 -0.25 0.85 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.38 8.89 7.33 -40.82 -0.30 8.59 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.40 4.67 8.24 -40.82 -0.34 4.33 16 44 H 0.10 0.83 7.79 -51.93 -0.40 0.42 16 45 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.22 2.20 8.06 -52.49 -0.42 1.78 16 49 H 0.10 1.28 8.12 -51.93 -0.42 0.86 16 50 H 0.11 1.09 7.86 -51.93 -0.41 0.69 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -31.31 390.86 -9.76 -41.07 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.16 Total: 11.01 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.10 Total: -1.57 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: 0.57 Total: -65.15 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.06 Total: -7.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.31 -9.76 -41.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714945708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.594 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds