Wall clock time and date at job start Sat Apr 11 2020 04:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 C 1.53001 * 109.47187 * 119.99847 * 2 1 3 5 5 C 1.53001 * 109.47035 * 175.00094 * 4 2 1 6 6 H 1.09008 * 109.47105 * 55.00059 * 5 4 2 7 7 C 1.52997 * 109.47049 * 174.99875 * 5 4 2 8 8 N 1.46506 * 109.47289 * 174.99938 * 7 5 4 9 9 C 1.36930 * 120.00258 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00439 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99225 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00268 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46935 * 90.00259 * 13 11 9 15 15 H 1.48507 * 109.47218 * 210.00042 * 13 11 9 16 16 H 1.48492 * 109.47204 * 330.00019 * 13 11 9 17 17 N 1.46500 * 109.47196 * 295.00088 * 5 4 2 18 18 C 1.34772 * 120.00014 * 84.99784 * 17 5 4 19 19 O 1.21281 * 120.00299 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99783 * 179.97438 * 18 17 5 21 21 H 1.09003 * 109.45596 * 60.05203 * 20 18 17 22 22 C 1.53149 * 109.45142 * 180.02562 * 20 18 17 23 23 C 1.53459 * 109.30627 * 189.46253 * 22 20 18 24 24 C 1.50799 * 108.13501 * 311.28923 * 23 22 20 25 25 N 1.29842 * 128.52358 * 195.90483 * 24 23 22 26 26 N 1.28905 * 109.47886 * 179.90211 * 25 24 23 27 27 C 1.30836 * 109.74206 * 0.02787 * 26 25 24 28 28 N 1.34693 * 107.07073 * 0.02960 * 27 26 25 29 29 C 1.46261 * 128.84778 * 179.87254 * 28 27 26 30 30 H 1.09002 * 109.47260 * 299.99892 * 1 2 3 31 31 H 1.08997 * 109.47042 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47163 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47260 * 240.00108 * 2 1 3 34 34 H 1.09001 * 109.46912 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46647 * 299.99585 * 3 2 1 36 36 H 1.08997 * 109.47262 * 60.00437 * 3 2 1 37 37 H 1.08992 * 109.46939 * 55.00133 * 4 2 1 38 38 H 1.09002 * 109.47368 * 294.99833 * 4 2 1 39 39 H 1.09001 * 109.47289 * 54.99809 * 7 5 4 40 40 H 1.09004 * 109.47261 * 295.00065 * 7 5 4 41 41 H 0.97001 * 119.99251 * 0.02562 * 8 7 5 42 42 H 0.97000 * 119.99950 * 179.97438 * 12 11 9 43 43 H 0.96994 * 119.99416 * 265.00201 * 17 5 4 44 44 H 1.08997 * 109.49969 * 309.41354 * 22 20 18 45 45 H 1.09004 * 109.49624 * 69.51307 * 22 20 18 46 46 H 1.09003 * 109.72990 * 70.94785 * 23 22 20 47 47 H 1.09000 * 109.73342 * 191.62848 * 23 22 20 48 48 H 1.08001 * 126.46773 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.58965 * 77.35380 * 29 28 27 50 50 H 1.08995 * 109.59554 * 316.89299 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 3.9954 0.1613 1.0527 7 6 4.0852 -1.4392 2.4918 8 7 5.5305 -1.6549 2.3875 9 6 6.2200 -2.1945 3.4403 10 1 5.6983 -2.4615 4.3475 11 6 7.5894 -2.3994 3.3413 12 7 8.2250 -2.0744 2.2356 13 14 8.5301 -3.1348 4.7778 14 1 8.5505 -4.6142 4.6506 15 1 9.9225 -2.6184 4.7741 16 1 7.8652 -2.7565 6.0505 17 7 3.9480 -1.6871 0.0626 18 6 4.0652 -1.1630 -1.1735 19 8 3.8539 0.0175 -1.3542 20 6 4.4598 -2.0436 -2.3310 21 1 3.7227 -2.8376 -2.4509 22 6 4.5206 -1.2058 -3.6116 23 6 4.6881 -2.1372 -4.8197 24 6 5.8060 -3.1028 -4.5165 25 7 6.4639 -3.8623 -5.3389 26 7 7.3445 -4.5409 -4.6864 27 6 7.2817 -4.2393 -3.4149 28 7 6.3056 -3.3219 -3.2738 29 6 5.8354 -2.6624 -2.0559 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -1.7197 1.2952 38 1 1.7517 -0.1583 2.1370 39 1 3.5877 -2.3922 2.6722 40 1 3.8780 -0.7592 3.3182 41 1 5.9990 -1.4154 1.5726 42 1 9.1820 -2.2171 2.1664 43 1 4.1173 -2.6311 0.2072 44 1 3.5980 -0.6352 -3.7172 45 1 5.3679 -0.5221 -3.5591 46 1 3.7629 -2.6875 -4.9911 47 1 4.9377 -1.5513 -5.7043 48 1 7.8964 -4.6487 -2.6269 49 1 6.5378 -1.8796 -1.7697 50 1 5.7528 -3.3943 -1.2525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714945708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:32:06 Heat of formation + Delta-G solvation = 19.906374 kcal Electronic energy + Delta-G solvation = -30498.540359 eV Core-core repulsion = 26561.075676 eV Total energy + Delta-G solvation = -3937.464683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.31724 -41.38691 -38.65414 -37.38353 -36.40060 -35.05085 -34.57688 -33.13093 -32.10739 -30.65180 -29.86039 -27.90474 -27.15076 -26.10276 -24.79865 -24.31763 -23.29601 -22.43470 -21.49351 -20.76773 -20.42813 -19.25043 -18.34574 -18.10083 -17.33620 -16.99533 -16.92882 -16.51275 -16.11746 -15.53058 -15.41928 -15.28581 -15.22316 -15.08559 -14.73025 -14.59138 -14.47001 -14.21781 -13.67621 -13.34539 -13.20754 -13.04188 -12.94575 -12.80920 -12.80011 -12.64054 -12.49885 -12.30160 -12.23671 -12.09656 -12.03212 -11.87031 -11.58579 -11.41854 -11.34069 -11.20020 -11.14515 -10.95616 -10.66459 -10.21981 -9.86521 -8.97414 -7.93691 -5.20742 0.84455 1.36772 1.48951 1.51045 1.57624 1.73434 1.80875 2.22076 2.56910 3.15084 3.35115 3.41473 3.46684 3.54777 3.71185 3.83861 4.01218 4.03054 4.11563 4.14111 4.18706 4.29305 4.31247 4.42226 4.45627 4.47688 4.61081 4.71487 4.77855 4.85296 4.93098 4.94555 4.96645 4.98408 5.01028 5.05097 5.11975 5.14947 5.20829 5.22151 5.29076 5.43782 5.54257 5.62172 5.65534 5.70955 5.87241 6.28113 6.63553 7.31438 7.37256 7.66644 8.10222 8.35057 9.28583 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006941 B = 0.004920 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.761665 B = 5690.043765 C = 9269.336896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.115 4.115 5 C 0.148 3.852 6 H 0.069 0.931 7 C 0.143 3.857 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.074 0.926 11 C -0.064 4.064 12 N -0.961 5.961 13 Si 0.962 3.038 14 H -0.287 1.287 15 H -0.302 1.302 16 H -0.274 1.274 17 N -0.705 5.705 18 C 0.523 3.477 19 O -0.545 6.545 20 C -0.110 4.110 21 H 0.131 0.869 22 C -0.098 4.098 23 C -0.027 4.027 24 C 0.177 3.823 25 N -0.335 5.335 26 N -0.345 5.345 27 C 0.162 3.838 28 N -0.466 5.466 29 C 0.118 3.882 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.377 0.623 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.244 0.756 49 H 0.085 0.915 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 0.981 -8.303 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.191 4.191 4 C -0.154 4.154 5 C 0.043 3.957 6 H 0.087 0.913 7 C 0.016 3.984 8 N -0.382 5.382 9 C -0.372 4.372 10 H 0.092 0.908 11 C -0.257 4.257 12 N -0.612 5.612 13 Si 0.792 3.208 14 H -0.214 1.214 15 H -0.229 1.229 16 H -0.199 1.199 17 N -0.356 5.356 18 C 0.309 3.691 19 O -0.422 6.422 20 C -0.131 4.131 21 H 0.149 0.851 22 C -0.136 4.136 23 C -0.066 4.066 24 C -0.092 4.092 25 N -0.175 5.175 26 N -0.183 5.183 27 C -0.126 4.126 28 N -0.157 5.157 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.209 0.791 42 H 0.058 0.942 43 H 0.243 0.757 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.138 0.862 47 H 0.132 0.868 48 H 0.260 0.740 49 H 0.104 0.896 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.977 1.100 -9.484 17.761 hybrid contribution 1.226 -0.176 2.039 2.385 sum -13.751 0.924 -7.445 15.664 Atomic orbital electron populations 1.21822 0.94757 1.01744 1.01669 1.21072 0.95437 0.96189 0.97861 1.21775 1.01402 0.95975 0.99998 1.21962 0.92918 1.01574 0.98910 1.21142 0.95402 0.94232 0.84892 0.91334 1.21113 0.84355 0.97998 0.94886 1.42447 1.03403 1.75740 1.16615 1.19551 0.90731 1.31909 0.95054 0.90803 1.25347 0.97541 1.03373 0.99471 1.69764 1.08312 1.55420 1.27697 0.85313 0.77633 0.77989 0.79826 1.21400 1.22892 1.19940 1.45972 1.69123 1.13396 1.07061 1.20233 0.76793 0.88306 0.83796 1.90727 1.50556 1.16612 1.84351 1.21630 0.96810 0.99659 0.95044 0.85091 1.21486 1.05093 0.96751 0.90278 1.20437 0.93050 0.93287 0.99810 1.25481 1.01061 1.01353 0.81272 1.73946 1.06817 1.09316 1.27394 1.74388 1.18306 1.22484 1.03167 1.26854 0.94238 0.93297 0.98255 1.46217 1.27799 1.32075 1.09567 1.21994 0.95883 0.98380 0.84258 0.92650 0.92839 0.92355 0.91498 0.92938 0.93823 0.93745 0.90574 0.90633 0.94429 0.95152 0.79071 0.94214 0.75704 0.87435 0.91925 0.86246 0.86780 0.73994 0.89622 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 2 C -0.09 -1.81 2.38 -10.79 -0.03 -1.84 16 3 C -0.13 -3.19 8.04 71.98 0.58 -2.62 16 4 C -0.11 -2.41 4.36 30.60 0.13 -2.28 16 5 C 0.15 3.93 2.33 44.99 0.10 4.04 16 6 H 0.07 2.19 5.92 -2.38 -0.01 2.18 16 7 C 0.14 4.69 5.82 86.38 0.50 5.20 16 8 N -0.74 -32.13 5.43 -343.44 -1.87 -34.00 16 9 C -0.24 -12.04 9.99 84.04 0.84 -11.20 16 10 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 11 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 12 N -0.96 -53.51 13.06 21.65 0.28 -53.23 16 13 Si 0.96 43.14 29.55 68.60 2.03 45.16 16 14 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 N -0.70 -16.25 4.37 -442.53 -1.93 -18.19 16 18 C 0.52 11.73 5.69 87.66 0.50 12.23 16 19 O -0.54 -14.92 10.79 -3.03 -0.03 -14.95 16 20 C -0.11 -1.88 2.54 -11.38 -0.03 -1.91 16 21 H 0.13 1.65 8.12 -2.39 -0.02 1.63 16 22 C -0.10 -1.60 4.68 30.80 0.14 -1.45 16 23 C -0.03 -0.41 6.34 30.03 0.19 -0.22 16 24 C 0.18 4.33 7.75 138.14 1.07 5.40 16 25 N -0.34 -10.56 12.21 -50.28 -0.61 -11.18 16 26 N -0.34 -11.14 12.23 -60.31 -0.74 -11.88 16 27 C 0.16 4.22 12.83 180.28 2.31 6.53 16 28 N -0.47 -10.96 3.11 -519.39 -1.62 -12.58 16 29 C 0.12 2.42 6.14 86.53 0.53 2.95 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.50 5.19 -2.39 -0.01 1.49 16 34 H 0.05 1.51 4.76 -2.39 -0.01 1.50 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.38 17.48 7.33 -92.71 -0.68 16.80 16 42 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.41 8.73 8.24 -92.71 -0.76 7.97 16 44 H 0.11 1.59 7.79 -2.39 -0.02 1.57 16 45 H 0.06 1.26 8.12 -2.38 -0.02 1.24 16 46 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.24 4.74 8.06 -2.91 -0.02 4.71 16 49 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 50 H 0.12 2.21 7.86 -2.39 -0.02 2.19 16 Total: -1.00 -67.56 390.86 3.00 -64.56 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.49 Total: 36.11 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 7.98 Total: 10.17 kcal Atomic # 7 Polarization: -134.57 SS G_CDS: -6.49 Total: -141.05 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.03 Total: -14.95 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.56 3.00 -64.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714945708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.468 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds