Wall clock time and date at job start Sat Apr 11 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87286 * 2 1 4 4 C 1.54327 * 109.88259 * 238.98711 * 2 1 3 5 5 C 1.55160 * 102.93970 * 218.38765 * 4 2 1 6 6 H 1.09005 * 111.00128 * 153.57391 * 5 4 2 7 7 N 1.46499 * 111.00626 * 277.42952 * 5 4 2 8 8 C 1.36933 * 119.99839 * 205.00590 * 7 5 4 9 9 H 1.07997 * 120.00493 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99905 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99802 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47417 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47184 * 120.00130 * 12 10 8 15 15 H 1.48503 * 109.46917 * 239.99555 * 12 10 8 16 16 C 1.54916 * 101.58228 * 35.50253 * 5 4 2 17 17 N 1.47025 * 109.88356 * 121.17840 * 2 1 3 18 18 C 1.34777 * 125.64664 * 298.33776 * 17 2 1 19 19 O 1.21610 * 119.99970 * 354.12511 * 18 17 2 20 20 C 1.47431 * 120.00092 * 174.12893 * 18 17 2 21 21 C 1.41286 * 126.41070 * 353.12752 * 20 18 17 22 22 N 1.30448 * 108.02043 * 179.97438 * 21 20 18 23 23 N 1.39931 * 108.89800 * 359.97438 * 22 21 20 24 24 C 1.46502 * 125.75578 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47442 * 304.98657 * 24 23 22 26 26 N 1.46899 * 109.46939 * 179.97438 * 25 24 23 27 27 C 1.46905 * 110.99904 * 66.04604 * 26 25 24 28 28 C 1.46899 * 110.99799 * 189.99638 * 26 25 24 29 29 C 1.34262 * 108.49206 * 359.75544 * 23 22 21 30 30 H 1.09004 * 109.46822 * 181.01436 * 1 2 3 31 31 H 1.09000 * 109.47269 * 301.01469 * 1 2 3 32 32 H 1.08999 * 109.46872 * 61.01557 * 1 2 3 33 33 H 1.09001 * 110.71981 * 100.02634 * 4 2 1 34 34 H 1.08997 * 110.87187 * 336.82350 * 4 2 1 35 35 H 0.96999 * 119.99713 * 24.99639 * 7 5 4 36 36 H 0.97005 * 119.99522 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.36419 * 81.82795 * 16 5 4 38 38 H 1.08997 * 110.36551 * 204.14791 * 16 5 4 39 39 H 1.07999 * 125.99281 * 359.97438 * 21 20 18 40 40 H 1.09006 * 109.46514 * 64.98473 * 24 23 22 41 41 H 1.08998 * 109.47336 * 184.98046 * 24 23 22 42 42 H 1.09000 * 109.46747 * 299.99199 * 25 24 23 43 43 H 1.08993 * 109.46977 * 59.99665 * 25 24 23 44 44 H 1.09002 * 109.47197 * 59.99691 * 27 26 25 45 45 H 1.09005 * 109.46905 * 179.97438 * 27 26 25 46 46 H 1.08993 * 109.47156 * 299.99741 * 27 26 25 47 47 H 1.09002 * 109.47231 * 60.00294 * 28 26 25 48 48 H 1.09002 * 109.47305 * 180.02562 * 28 26 25 49 49 H 1.09001 * 109.47438 * 300.00428 * 28 26 25 50 50 H 1.07996 * 126.29398 * 180.23940 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2877 -1.5132 -0.6945 6 1 3.4852 -2.4092 -1.2830 7 7 4.4674 -0.6458 -0.6502 8 6 5.7217 -1.1929 -0.7004 9 1 5.8413 -2.2639 -0.7722 10 6 6.8396 -0.3710 -0.6589 11 7 6.6939 0.9342 -0.5719 12 14 8.5507 -1.1174 -0.7266 13 1 8.4427 -2.5954 -0.8215 14 1 9.2715 -0.5960 -1.9156 15 1 9.2982 -0.7542 0.5041 16 6 2.8145 -1.8804 0.7342 17 7 2.0300 -0.7158 1.1829 18 6 1.8083 -0.3650 2.4652 19 8 1.2354 0.6770 2.7201 20 6 2.2603 -1.2444 3.5588 21 6 2.8123 -2.5376 3.4212 22 7 3.0856 -2.9887 4.6143 23 7 2.7275 -2.0198 5.5582 24 6 2.8764 -2.1432 7.0104 25 6 2.1673 -3.4113 7.4900 26 7 2.3172 -3.5352 8.9460 27 6 1.6077 -2.4535 9.6422 28 6 1.8590 -4.8507 9.4123 29 6 2.2300 -0.9555 4.9083 30 1 -0.3633 -1.0276 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.3529 -0.0431 -2.0202 34 1 1.3065 -1.4435 -1.6232 35 1 4.3600 0.3160 -0.5855 36 1 7.4751 1.5085 -0.5426 37 1 2.1887 -2.7725 0.7089 38 1 3.6716 -2.0358 1.3894 39 1 2.9787 -3.0611 2.4913 40 1 3.9351 -2.2011 7.2634 41 1 2.4339 -1.2736 7.4962 42 1 1.1086 -3.3532 7.2370 43 1 2.6099 -4.2808 7.0042 44 1 0.5470 -2.4967 9.3951 45 1 1.7347 -2.5696 10.7186 46 1 2.0147 -1.4919 9.3296 47 1 2.4487 -5.6319 8.9326 48 1 1.9806 -4.9156 10.4936 49 1 0.8073 -4.9808 9.1568 50 1 1.8694 -0.0426 5.3587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989542657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:31:25 Heat of formation + Delta-G solvation = 76.984934 kcal Electronic energy + Delta-G solvation = -29387.305176 eV Core-core repulsion = 25452.315605 eV Total energy + Delta-G solvation = -3934.989571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34060 -39.46603 -38.06564 -37.07244 -33.94747 -33.80656 -31.59248 -31.27904 -30.29272 -28.90274 -28.39134 -28.05629 -25.60724 -25.00348 -23.81637 -23.07006 -21.99066 -20.92441 -20.71366 -19.75987 -18.84522 -17.37551 -17.16309 -16.33950 -16.08135 -15.96792 -15.42046 -15.28036 -14.94482 -14.57931 -14.46010 -14.00898 -13.81811 -13.70528 -13.44747 -13.39094 -12.95287 -12.87525 -12.72306 -12.50110 -12.34234 -12.18130 -12.17087 -12.02544 -11.77160 -11.61480 -11.52717 -11.10213 -10.92350 -10.82556 -10.67351 -10.56825 -10.25245 -9.96575 -9.70109 -9.52502 -9.42471 -9.00069 -8.91085 -8.60434 -8.08307 -7.00477 -5.79802 -3.09965 1.64651 2.24062 2.37433 3.42066 3.47508 3.47748 3.50141 3.51541 3.83363 4.19848 4.52221 4.55824 4.66617 4.76566 4.80795 4.88421 4.92810 5.02291 5.08973 5.13680 5.19613 5.29045 5.35648 5.41372 5.43241 5.45300 5.48219 5.55945 5.60942 5.63382 5.72890 5.76806 5.86034 5.93114 6.05855 6.23154 6.27121 6.40347 6.45621 6.46250 6.48032 6.52839 6.66318 6.75228 6.83957 6.94087 7.61612 7.67119 8.07847 8.37373 8.69854 9.49402 10.05202 10.39521 11.42170 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.003020 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.587712 B = 9269.720676 C =11066.096214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.168 3.832 6 H 0.075 0.925 7 N -0.711 5.711 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.292 1.292 16 C 0.061 3.939 17 N -0.594 5.594 18 C 0.610 3.390 19 O -0.563 6.563 20 C -0.277 4.277 21 C 0.078 3.922 22 N -0.299 5.299 23 N -0.365 5.365 24 C 0.135 3.865 25 C 0.045 3.955 26 N -0.545 5.545 27 C 0.016 3.984 28 C 0.026 3.974 29 C 0.121 3.879 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.200 0.800 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.027 0.973 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 -8.783 14.898 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.056 3.944 6 H 0.092 0.908 7 N -0.350 5.350 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.206 4.206 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.066 4.066 17 N -0.325 5.325 18 C 0.400 3.600 19 O -0.444 6.444 20 C -0.292 4.292 21 C -0.109 4.109 22 N -0.119 5.119 23 N -0.144 5.144 24 C 0.014 3.986 25 C -0.084 4.084 26 N -0.270 5.270 27 C -0.133 4.133 28 C -0.122 4.122 29 C -0.030 4.030 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.217 0.783 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.111 0.889 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.046 0.954 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.021 -9.274 16.031 22.639 hybrid contribution -0.119 0.629 -0.521 0.825 sum -13.140 -8.645 15.510 22.090 Atomic orbital electron populations 1.22125 0.95593 1.01666 1.02268 1.21435 0.93360 0.96807 0.84653 0.90811 1.23083 0.98288 1.00054 0.96416 1.21353 0.87066 0.94435 0.91592 0.90751 1.42339 1.00056 1.05555 1.87056 1.19275 0.83175 0.92040 1.43180 0.90880 1.24769 0.97932 0.95354 1.02538 1.69684 1.28882 1.02160 1.56756 0.86143 0.84816 0.78182 0.77173 1.20430 1.21860 1.21910 1.23691 0.94497 0.87249 1.01130 1.48092 1.51669 1.28587 1.04194 1.16787 0.78320 0.84168 0.80729 1.90710 1.45088 1.24955 1.83606 1.20232 1.17591 0.98213 0.93158 1.24764 0.95321 0.94105 0.96727 1.77154 1.23517 1.13482 0.97731 1.48422 1.47202 1.12141 1.06678 1.21716 1.03473 0.99455 0.73985 1.22346 0.99121 0.98920 0.88024 1.61896 1.57247 1.03630 1.04201 1.22528 0.96185 0.94908 0.99644 1.22384 0.98393 0.90202 1.01237 1.22869 0.95331 0.92626 0.92124 0.92885 0.91838 0.92043 0.89837 0.90803 0.77978 0.93479 0.92586 0.89570 0.78342 0.88400 0.88519 0.94067 0.88887 0.95296 0.90925 0.91040 0.90953 0.90986 0.95449 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.10 37.16 0.34 -1.89 16 2 C 0.14 2.32 3.42 -66.95 -0.23 2.09 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.14 -2.13 6.07 -24.89 -0.15 -2.29 16 5 C 0.17 3.05 3.72 -65.78 -0.24 2.80 16 6 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 7 N -0.71 -16.93 5.23 -51.34 -0.27 -17.20 16 8 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 11 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 12 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 C 0.06 1.00 4.79 -2.53 -0.01 0.98 16 17 N -0.59 -10.43 3.06 -164.27 -0.50 -10.93 16 18 C 0.61 11.41 7.58 -12.52 -0.09 11.31 16 19 O -0.56 -11.78 16.19 5.27 0.09 -11.70 16 20 C -0.28 -4.55 6.05 -105.07 -0.64 -5.18 16 21 C 0.08 1.20 10.28 -16.98 -0.17 1.02 16 22 N -0.30 -4.49 12.33 30.86 0.38 -4.11 16 23 N -0.36 -4.68 3.65 -60.81 -0.22 -4.91 16 24 C 0.14 1.24 6.41 -4.04 -0.03 1.22 16 25 C 0.04 0.39 5.13 -3.82 -0.02 0.37 16 26 N -0.55 -4.21 5.02 -251.26 -1.26 -5.48 16 27 C 0.02 0.09 9.32 60.07 0.56 0.65 16 28 C 0.03 0.17 9.57 60.06 0.57 0.74 16 29 C 0.12 1.68 11.26 -16.56 -0.19 1.50 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.39 10.15 7.86 -40.82 -0.32 9.83 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 38 H 0.09 1.57 5.94 -51.93 -0.31 1.26 16 39 H 0.20 2.77 4.87 -52.49 -0.26 2.51 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.66 6.47 -51.93 -0.34 0.33 16 42 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.09 0.93 8.06 -51.93 -0.42 0.52 16 44 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.07 0.38 6.47 -51.93 -0.34 0.05 16 47 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 48 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 49 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -33.52 401.71 -8.77 -42.29 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.19 Total: 9.70 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.55 Total: 6.31 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.15 Total: -69.73 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.52 -8.77 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989542657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.271 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds