Wall clock time and date at job start Sat Apr 11 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.87286 * 2 1 4 4 C 1.54327 * 109.88259 * 238.98711 * 2 1 3 5 5 C 1.55160 * 102.93970 * 218.38765 * 4 2 1 6 6 H 1.09005 * 111.00128 * 153.57391 * 5 4 2 7 7 N 1.46499 * 111.00626 * 277.42952 * 5 4 2 8 8 C 1.36933 * 119.99839 * 205.00590 * 7 5 4 9 9 H 1.07997 * 120.00493 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99905 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99802 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47417 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47184 * 120.00130 * 12 10 8 15 15 H 1.48503 * 109.46917 * 239.99555 * 12 10 8 16 16 C 1.54916 * 101.58228 * 35.50253 * 5 4 2 17 17 N 1.47025 * 109.88356 * 121.17840 * 2 1 3 18 18 C 1.34777 * 125.64664 * 298.33776 * 17 2 1 19 19 O 1.21610 * 119.99970 * 354.12511 * 18 17 2 20 20 C 1.47431 * 120.00092 * 174.12893 * 18 17 2 21 21 C 1.41286 * 126.41070 * 353.12752 * 20 18 17 22 22 N 1.30448 * 108.02043 * 179.97438 * 21 20 18 23 23 N 1.39931 * 108.89800 * 359.97438 * 22 21 20 24 24 C 1.46502 * 125.75578 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47442 * 304.98657 * 24 23 22 26 26 N 1.46899 * 109.46939 * 179.97438 * 25 24 23 27 27 C 1.46905 * 110.99904 * 66.04604 * 26 25 24 28 28 C 1.46899 * 110.99799 * 189.99638 * 26 25 24 29 29 C 1.34262 * 108.49206 * 359.75544 * 23 22 21 30 30 H 1.09004 * 109.46822 * 181.01436 * 1 2 3 31 31 H 1.09000 * 109.47269 * 301.01469 * 1 2 3 32 32 H 1.08999 * 109.46872 * 61.01557 * 1 2 3 33 33 H 1.09001 * 110.71981 * 100.02634 * 4 2 1 34 34 H 1.08997 * 110.87187 * 336.82350 * 4 2 1 35 35 H 0.96999 * 119.99713 * 24.99639 * 7 5 4 36 36 H 0.97005 * 119.99522 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.36419 * 81.82795 * 16 5 4 38 38 H 1.08997 * 110.36551 * 204.14791 * 16 5 4 39 39 H 1.07999 * 125.99281 * 359.97438 * 21 20 18 40 40 H 1.09006 * 109.46514 * 64.98473 * 24 23 22 41 41 H 1.08998 * 109.47336 * 184.98046 * 24 23 22 42 42 H 1.09000 * 109.46747 * 299.99199 * 25 24 23 43 43 H 1.08993 * 109.46977 * 59.99665 * 25 24 23 44 44 H 1.09002 * 109.47197 * 59.99691 * 27 26 25 45 45 H 1.09005 * 109.46905 * 179.97438 * 27 26 25 46 46 H 1.08993 * 109.47156 * 299.99741 * 27 26 25 47 47 H 1.09002 * 109.47231 * 60.00294 * 28 26 25 48 48 H 1.09002 * 109.47305 * 180.02562 * 28 26 25 49 49 H 1.09001 * 109.47438 * 300.00428 * 28 26 25 50 50 H 1.07996 * 126.29398 * 180.23940 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2877 -1.5132 -0.6945 6 1 3.4852 -2.4092 -1.2830 7 7 4.4674 -0.6458 -0.6502 8 6 5.7217 -1.1929 -0.7004 9 1 5.8413 -2.2639 -0.7722 10 6 6.8396 -0.3710 -0.6589 11 7 6.6939 0.9342 -0.5719 12 14 8.5507 -1.1174 -0.7266 13 1 8.4427 -2.5954 -0.8215 14 1 9.2715 -0.5960 -1.9156 15 1 9.2982 -0.7542 0.5041 16 6 2.8145 -1.8804 0.7342 17 7 2.0300 -0.7158 1.1829 18 6 1.8083 -0.3650 2.4652 19 8 1.2354 0.6770 2.7201 20 6 2.2603 -1.2444 3.5588 21 6 2.8123 -2.5376 3.4212 22 7 3.0856 -2.9887 4.6143 23 7 2.7275 -2.0198 5.5582 24 6 2.8764 -2.1432 7.0104 25 6 2.1673 -3.4113 7.4900 26 7 2.3172 -3.5352 8.9460 27 6 1.6077 -2.4535 9.6422 28 6 1.8590 -4.8507 9.4123 29 6 2.2300 -0.9555 4.9083 30 1 -0.3633 -1.0276 0.0182 31 1 -0.3634 0.5295 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.3529 -0.0431 -2.0202 34 1 1.3065 -1.4435 -1.6232 35 1 4.3600 0.3160 -0.5855 36 1 7.4751 1.5085 -0.5426 37 1 2.1887 -2.7725 0.7089 38 1 3.6716 -2.0358 1.3894 39 1 2.9787 -3.0611 2.4913 40 1 3.9351 -2.2011 7.2634 41 1 2.4339 -1.2736 7.4962 42 1 1.1086 -3.3532 7.2370 43 1 2.6099 -4.2808 7.0042 44 1 0.5470 -2.4967 9.3951 45 1 1.7347 -2.5696 10.7186 46 1 2.0147 -1.4919 9.3296 47 1 2.4487 -5.6319 8.9326 48 1 1.9806 -4.9156 10.4936 49 1 0.8073 -4.9808 9.1568 50 1 1.8694 -0.0426 5.3587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989542657.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:31:24 Heat of formation + Delta-G solvation = 53.113265 kcal Electronic energy + Delta-G solvation = -29388.340330 eV Core-core repulsion = 25452.315605 eV Total energy + Delta-G solvation = -3936.024724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.47057 -40.81068 -38.73698 -38.49858 -35.75488 -34.77594 -33.13270 -32.78598 -31.37337 -30.10383 -29.82602 -28.54525 -26.86002 -25.85975 -25.67883 -24.36553 -22.77542 -22.21306 -21.69759 -21.09098 -20.12338 -19.24108 -18.37903 -17.57278 -17.18369 -16.89429 -16.44948 -16.35488 -16.12277 -15.89622 -15.54853 -15.30086 -15.27169 -14.87779 -14.76105 -14.56421 -14.29449 -14.09070 -13.68398 -13.45563 -13.41597 -13.15263 -13.08853 -13.01880 -12.88698 -12.71542 -12.66457 -12.59238 -12.38594 -12.18359 -12.12079 -11.95100 -11.83726 -11.59948 -11.42641 -11.01093 -10.79236 -10.60494 -9.84015 -9.49488 -9.46376 -8.92802 -7.90982 -5.19186 0.50567 1.15648 1.28478 1.48907 1.49840 1.59142 2.15948 2.49630 2.58501 2.89591 3.36295 3.42095 3.64702 3.78123 3.82532 3.91296 3.91616 4.00138 4.09371 4.14671 4.19908 4.25502 4.30939 4.43969 4.44622 4.51515 4.57159 4.61113 4.63556 4.74506 4.75631 4.79367 4.80600 4.83789 4.97522 4.98961 5.00551 5.16660 5.23883 5.26109 5.36681 5.41740 5.58918 5.63036 5.76339 5.89214 5.96574 6.30275 6.48745 6.70209 7.29629 7.36781 8.12738 8.34233 9.32803 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.003020 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.587712 B = 9269.720676 C =11066.096214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.123 4.123 5 C 0.155 3.845 6 H 0.093 0.907 7 N -0.725 5.725 8 C -0.229 4.229 9 H 0.087 0.913 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.259 1.259 14 H -0.297 1.297 15 H -0.303 1.303 16 C 0.070 3.930 17 N -0.598 5.598 18 C 0.602 3.398 19 O -0.597 6.597 20 C -0.309 4.309 21 C 0.076 3.924 22 N -0.315 5.315 23 N -0.356 5.356 24 C 0.130 3.870 25 C 0.055 3.945 26 N -0.555 5.555 27 C 0.013 3.987 28 C 0.025 3.975 29 C 0.131 3.869 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.369 0.631 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.209 0.791 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.028 0.972 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.999 -10.871 15.570 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.162 4.162 5 C 0.045 3.955 6 H 0.110 0.890 7 N -0.363 5.363 8 C -0.361 4.361 9 H 0.105 0.895 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.183 1.183 14 H -0.225 1.225 15 H -0.231 1.231 16 C -0.055 4.055 17 N -0.329 5.329 18 C 0.393 3.607 19 O -0.480 6.480 20 C -0.324 4.324 21 C -0.111 4.111 22 N -0.135 5.135 23 N -0.134 5.134 24 C 0.010 3.990 25 C -0.074 4.074 26 N -0.279 5.279 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.021 4.021 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.225 0.775 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.048 0.952 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.046 0.954 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.175 -11.456 16.705 24.723 hybrid contribution 0.145 1.230 -0.644 1.396 sum -14.030 -10.226 16.061 23.651 Atomic orbital electron populations 1.22014 0.93347 1.02733 1.02293 1.21515 0.95101 0.95200 0.85004 0.94353 1.23009 0.97698 1.00078 0.95384 1.21706 0.86206 0.94546 0.93018 0.88958 1.42550 1.01152 1.05387 1.87235 1.19732 0.84210 0.92553 1.39637 0.89499 1.25536 1.01553 0.95751 1.04258 1.69850 1.29088 1.03554 1.59838 0.85155 0.80585 0.78435 0.76121 1.18299 1.22452 1.23100 1.23595 0.94592 0.88289 0.99021 1.48212 1.51489 1.28885 1.04264 1.17179 0.77959 0.84081 0.81475 1.90675 1.46786 1.26408 1.84138 1.20246 1.19796 0.98773 0.93600 1.24882 0.95115 0.93779 0.97292 1.77111 1.23981 1.14416 0.97985 1.48687 1.45772 1.11270 1.07693 1.22033 1.03936 1.01036 0.72015 1.22160 0.98468 0.97901 0.88872 1.61923 1.57914 1.04646 1.03438 1.22606 0.96094 0.94631 1.00129 1.22430 0.98333 0.89579 1.01984 1.23228 0.94021 0.93294 0.91601 0.91076 0.94033 0.89894 0.90701 0.86765 0.79974 0.94434 0.88413 0.91435 0.77478 0.88343 0.85695 0.94524 0.90475 0.95222 0.89890 0.90290 0.91276 0.89698 0.95353 0.77618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.10 71.98 0.66 -3.22 16 2 C 0.13 4.38 3.42 45.34 0.16 4.54 16 3 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.12 -3.51 6.07 31.79 0.19 -3.32 16 5 C 0.16 5.34 3.72 46.39 0.17 5.51 16 6 H 0.09 2.88 8.09 -2.38 -0.02 2.86 16 7 N -0.73 -34.54 5.23 -316.35 -1.66 -36.20 16 8 C -0.23 -12.06 9.96 84.04 0.84 -11.23 16 9 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 10 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 11 N -0.97 -60.14 13.06 21.65 0.28 -59.85 16 12 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 13 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 16 C 0.07 2.19 4.79 86.86 0.42 2.60 16 17 N -0.60 -20.67 3.06 -791.87 -2.43 -23.10 16 18 C 0.60 22.61 7.58 86.66 0.66 23.27 16 19 O -0.60 -25.50 16.19 -4.06 -0.07 -25.57 16 20 C -0.31 -10.02 6.05 -20.15 -0.12 -10.14 16 21 C 0.08 2.27 10.28 85.65 0.88 3.15 16 22 N -0.31 -9.14 12.33 -56.28 -0.69 -9.84 16 23 N -0.36 -8.66 3.65 -346.29 -1.26 -9.92 16 24 C 0.13 2.16 6.41 86.38 0.55 2.71 16 25 C 0.05 0.89 5.13 86.30 0.44 1.33 16 26 N -0.55 -7.63 5.02 -948.84 -4.76 -12.40 16 27 C 0.01 0.13 9.32 127.69 1.19 1.32 16 28 C 0.02 0.28 9.57 127.69 1.22 1.50 16 29 C 0.13 3.50 11.26 84.27 0.95 4.45 16 30 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.04 1.29 7.11 -2.39 -0.02 1.27 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 2.39 7.86 -2.39 -0.02 2.37 16 35 H 0.37 19.94 7.86 -92.71 -0.73 19.21 16 36 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 37 H 0.10 2.28 7.72 -2.39 -0.02 2.26 16 38 H 0.07 2.39 5.94 -2.39 -0.01 2.38 16 39 H 0.21 5.50 4.87 -2.91 -0.01 5.49 16 40 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.13 1.38 6.47 -2.39 -0.02 1.36 16 42 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 43 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 44 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.66 8.12 -2.38 -0.02 0.64 16 46 H 0.08 0.65 6.47 -2.39 -0.02 0.63 16 47 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 48 H 0.08 0.74 8.12 -2.39 -0.02 0.73 16 49 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -74.63 401.71 0.32 -74.31 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.21 Total: 36.19 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 8.67 Total: 18.47 kcal Atomic # 7 Polarization: -140.79 SS G_CDS: -10.52 Total: -151.30 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.57 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.63 0.32 -74.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989542657.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.423 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds