Wall clock time and date at job start Sat Apr 11 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46780 * 2 1 4 4 H 1.09004 * 110.45995 * 56.76581 * 3 2 1 5 5 C 1.54377 * 110.41322 * 294.34608 * 3 2 1 6 6 H 1.09003 * 110.32258 * 336.36979 * 5 3 2 7 7 C 1.50700 * 110.32179 * 98.47730 * 5 3 2 8 8 O 1.21277 * 119.99938 * 358.57142 * 7 5 3 9 9 N 1.34776 * 119.99647 * 178.57590 * 7 5 3 10 10 C 1.46499 * 120.00031 * 179.97438 * 9 7 5 11 11 C 1.51226 * 111.06494 * 61.00994 * 10 9 7 12 12 C 1.55700 * 104.70823 * 84.47129 * 11 10 9 13 13 C 1.56568 * 105.79538 * 7.32122 * 12 11 10 14 14 C 1.50524 * 101.79869 * 24.20031 * 13 12 11 15 15 H 1.08997 * 107.76175 * 66.81235 * 14 13 12 16 16 N 1.42706 * 128.14331 * 198.71855 * 14 13 12 17 17 C 1.36937 * 127.10136 * 331.68110 * 16 14 13 18 18 H 1.07999 * 120.00407 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99884 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47149 * 59.99484 * 21 19 17 23 23 H 1.48490 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46864 * 299.99734 * 21 19 17 25 25 C 1.49293 * 105.79608 * 151.69399 * 16 14 13 26 26 C 1.52129 * 111.08561 * 281.61595 * 10 9 7 27 27 C 1.54260 * 105.14623 * 217.42055 * 5 3 2 28 28 C 1.54374 * 105.06373 * 359.95245 * 27 5 3 29 29 N 1.48562 * 104.59659 * 23.85030 * 28 27 5 30 30 C 1.46894 * 111.00274 * 200.96340 * 29 28 27 31 31 H 1.09004 * 109.47346 * 185.68753 * 1 2 3 32 32 H 1.08998 * 109.47084 * 305.68843 * 1 2 3 33 33 H 1.09003 * 109.47227 * 65.68575 * 1 2 3 34 34 H 1.08999 * 109.46801 * 239.99993 * 2 1 3 35 35 H 1.09000 * 109.46930 * 120.00271 * 2 1 3 36 36 H 0.97003 * 119.99978 * 359.97438 * 9 7 5 37 37 H 1.08998 * 110.41712 * 203.31255 * 11 10 9 38 38 H 1.09008 * 110.41288 * 325.63572 * 11 10 9 39 39 H 1.08994 * 110.15804 * 126.42912 * 12 11 10 40 40 H 1.08999 * 110.15941 * 248.19184 * 12 11 10 41 41 H 1.08994 * 110.92922 * 266.08115 * 13 12 11 42 42 H 1.08994 * 111.00410 * 142.35124 * 13 12 11 43 43 H 0.96997 * 119.99938 * 180.02562 * 20 19 17 44 44 H 1.09004 * 110.05090 * 232.07766 * 25 16 14 45 45 H 1.09001 * 110.08717 * 110.63147 * 25 16 14 46 46 H 1.08998 * 111.14903 * 43.27260 * 26 10 9 47 47 H 1.08998 * 111.15088 * 167.50243 * 26 10 9 48 48 H 1.09009 * 110.31956 * 118.84534 * 27 5 3 49 49 H 1.08999 * 110.32348 * 241.05234 * 27 5 3 50 50 H 1.09003 * 110.41323 * 142.63140 * 28 27 5 51 51 H 1.09002 * 110.40899 * 265.07262 * 28 27 5 52 52 H 1.09001 * 109.47088 * 55.60119 * 30 29 28 53 53 H 1.08996 * 109.47780 * 175.60798 * 30 29 28 54 54 H 1.09000 * 109.47158 * 295.60577 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6392 1.9883 0.8542 5 6 1.6571 2.1490 -1.3182 6 1 1.4957 1.4152 -2.1079 7 6 0.4199 2.9870 -1.1226 8 8 -0.1343 3.0076 -0.0441 9 7 -0.0706 3.7135 -2.1464 10 6 -1.2736 4.5277 -1.9565 11 6 -1.0554 5.5799 -0.8925 12 6 -0.3792 6.7656 -1.6416 13 6 -0.4195 6.3884 -3.1607 14 6 -1.5802 5.4313 -3.2095 15 1 -2.4855 5.9946 -2.9831 16 7 -1.8925 4.4754 -4.2221 17 6 -1.5786 4.5495 -5.5529 18 1 -1.0365 5.4026 -5.9333 19 6 -1.9573 3.5280 -6.4132 20 7 -2.6176 2.4880 -5.9497 21 14 -1.5298 3.6294 -8.2289 22 1 -0.0551 3.7034 -8.3868 23 1 -2.0420 2.4225 -8.9261 24 1 -2.1521 4.8427 -8.8168 25 6 -2.6322 3.3782 -3.5309 26 6 -2.5283 3.6686 -1.9994 27 6 2.8640 3.0470 -1.6595 28 6 3.8762 2.8096 -0.5183 29 7 3.5268 1.4694 0.0192 30 6 4.0392 1.3003 1.3855 31 1 -0.3634 -1.0226 0.1018 32 1 -0.3633 0.5995 0.8347 33 1 -0.3634 0.4231 -0.9365 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.3729 3.6972 -3.0089 37 1 -2.0085 5.8934 -0.4666 38 1 -0.3976 5.1995 -0.1109 39 1 -0.9358 7.6863 -1.4673 40 1 0.6523 6.8808 -1.3090 41 1 0.5046 5.8966 -3.4643 42 1 -0.6122 7.2669 -3.7764 43 1 -2.8818 1.7741 -6.5508 44 1 -2.1742 2.4161 -3.7608 45 1 -3.6772 3.3779 -3.8412 46 1 -2.3937 2.7474 -1.4327 47 1 -3.3970 4.2232 -1.6445 48 1 3.2962 2.7528 -2.6161 49 1 2.5616 4.0938 -1.6857 50 1 4.8945 2.8097 -0.9072 51 1 3.7633 3.5703 0.2542 52 1 3.6656 2.1071 2.0161 53 1 3.7035 0.3428 1.7836 54 1 5.1288 1.3256 1.3707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990760708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:30:35 Heat of formation + Delta-G solvation = -15.284397 kcal Electronic energy + Delta-G solvation = -32249.839822 eV Core-core repulsion = 28414.389495 eV Total energy + Delta-G solvation = -3835.450326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.09702 -40.70680 -38.68038 -36.12991 -34.62512 -34.30428 -33.73707 -32.99040 -31.44749 -28.93218 -28.52638 -27.47659 -26.63889 -25.92265 -24.42113 -22.79858 -22.14936 -21.84355 -21.25925 -20.62619 -19.99807 -18.41936 -18.26740 -17.36513 -16.87074 -16.48933 -16.18785 -16.00026 -15.88385 -15.69161 -15.46961 -15.15832 -14.98285 -14.51189 -14.26984 -14.10580 -14.06718 -13.77662 -13.45990 -13.33035 -13.05879 -12.95973 -12.84866 -12.79661 -12.63895 -12.51784 -12.37343 -12.21329 -12.12990 -12.09191 -12.00272 -11.98881 -11.80412 -11.64726 -11.52544 -11.45507 -11.35786 -10.97936 -10.70655 -10.42579 -9.84550 -9.48547 -8.85933 -7.82316 -5.18118 1.49388 1.50892 1.57148 1.77589 2.27144 2.51849 3.02871 3.11044 3.37835 3.49328 3.66701 3.72178 3.87751 3.92055 4.10924 4.13605 4.17497 4.29641 4.31225 4.35876 4.41536 4.42573 4.43188 4.56617 4.58957 4.60141 4.62761 4.65968 4.72918 4.81411 4.91244 4.92103 4.93859 4.97567 4.99208 5.07463 5.09039 5.11924 5.12067 5.13711 5.23273 5.27404 5.28719 5.41208 5.49403 5.56415 5.61193 5.69883 5.82943 5.86403 6.06010 6.19368 6.74083 7.06039 7.39337 7.78521 8.50706 9.29061 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004118 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.365133 B = 6798.517112 C = 7372.498243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C 0.084 3.916 4 H 0.055 0.945 5 C -0.110 4.110 6 H 0.098 0.902 7 C 0.524 3.476 8 O -0.566 6.566 9 N -0.690 5.690 10 C 0.143 3.857 11 C -0.109 4.109 12 C -0.102 4.102 13 C -0.108 4.108 14 C 0.147 3.853 15 H 0.013 0.987 16 N -0.596 5.596 17 C -0.234 4.234 18 H 0.087 0.913 19 C -0.058 4.058 20 N -0.949 5.949 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.301 1.301 24 H -0.281 1.281 25 C 0.192 3.808 26 C -0.128 4.128 27 C -0.113 4.113 28 C 0.037 3.963 29 N -0.519 5.519 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.245 0.755 44 H 0.032 0.968 45 H -0.001 1.001 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.044 0.956 52 H 0.025 0.975 53 H 0.073 0.927 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.828 2.068 13.120 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.025 4.025 4 H 0.073 0.927 5 C -0.132 4.132 6 H 0.116 0.884 7 C 0.311 3.689 8 O -0.446 6.446 9 N -0.339 5.339 10 C 0.055 3.945 11 C -0.147 4.147 12 C -0.140 4.140 13 C -0.147 4.147 14 C 0.038 3.962 15 H 0.030 0.970 16 N -0.320 5.320 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.252 4.252 20 N -0.598 5.598 21 Si 0.800 3.200 22 H -0.199 1.199 23 H -0.227 1.227 24 H -0.208 1.208 25 C 0.067 3.933 26 C -0.167 4.167 27 C -0.151 4.151 28 C -0.091 4.091 29 N -0.243 5.243 30 C -0.135 4.135 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.119 0.881 51 H 0.062 0.938 52 H 0.043 0.957 53 H 0.092 0.908 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.639 1.550 13.352 18.451 hybrid contribution -0.794 0.206 -1.213 1.464 sum 11.845 1.756 12.139 17.051 Atomic orbital electron populations 1.21656 0.96019 1.01311 1.00838 1.21353 0.94791 0.94725 1.02755 1.22512 0.88116 0.96480 0.95369 0.92731 1.22074 0.93147 0.97865 1.00105 0.88389 1.20599 0.85577 0.79132 0.83620 1.90603 1.61759 1.65659 1.26618 1.45707 1.28021 1.46258 1.13936 1.21397 0.84158 0.90902 0.98057 1.21868 1.01705 0.94365 0.96787 1.22793 1.01238 0.97623 0.92352 1.21877 0.97390 0.98205 0.97211 1.21006 0.96471 0.91122 0.87623 0.96952 1.43768 1.64375 1.20415 1.03398 1.19338 1.29979 1.03892 0.83015 0.89492 1.25530 1.00957 0.96829 1.01867 1.70123 1.44649 1.10454 1.34584 0.85258 0.78094 0.76256 0.80347 1.19921 1.22750 1.20779 1.21666 0.93483 0.91135 0.87000 1.22643 0.97556 0.99839 0.96644 1.22320 0.93429 0.99050 1.00296 1.23137 1.00236 0.89521 0.96203 1.65372 1.08032 1.29099 1.21804 1.22557 1.01510 1.01336 0.88052 0.91798 0.93328 0.95178 0.91375 0.90805 0.76383 0.90690 0.91249 0.90040 0.90552 0.91670 0.91258 0.94581 0.94943 0.98322 0.92427 0.90616 0.89095 0.90768 0.88109 0.93769 0.95664 0.90831 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.74 71.98 0.63 -3.19 16 2 C -0.10 -2.35 5.57 30.60 0.17 -2.18 16 3 C 0.08 2.09 1.73 45.03 0.08 2.17 16 4 H 0.05 1.59 6.74 -2.39 -0.02 1.58 16 5 C -0.11 -2.93 2.42 -10.65 -0.03 -2.95 16 6 H 0.10 2.76 7.81 -2.39 -0.02 2.74 16 7 C 0.52 16.73 5.42 87.66 0.48 17.20 16 8 O -0.57 -20.43 12.42 -3.02 -0.04 -20.47 16 9 N -0.69 -23.15 4.28 -419.68 -1.80 -24.95 16 10 C 0.14 5.01 0.42 4.32 0.00 5.01 16 11 C -0.11 -3.21 5.96 30.95 0.18 -3.02 16 12 C -0.10 -2.53 6.96 32.77 0.23 -2.31 16 13 C -0.11 -3.30 6.48 31.04 0.20 -3.10 16 14 C 0.15 5.65 2.63 46.47 0.12 5.77 16 15 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16 16 N -0.60 -28.60 3.08 -668.60 -2.06 -30.67 16 17 C -0.23 -12.18 10.29 84.03 0.86 -11.32 16 18 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 20 N -0.95 -55.46 10.55 21.65 0.23 -55.23 16 21 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.19 9.39 5.35 86.96 0.46 9.85 16 26 C -0.13 -5.09 6.29 31.43 0.20 -4.89 16 27 C -0.11 -2.43 6.60 31.49 0.21 -2.22 16 28 C 0.04 0.70 6.50 86.45 0.56 1.27 16 29 N -0.52 -11.02 5.34 -882.28 -4.71 -15.74 16 30 C 0.01 0.24 9.45 127.69 1.21 1.45 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.43 7.70 -2.39 -0.02 1.42 16 33 H 0.03 0.94 7.08 -2.39 -0.02 0.93 16 34 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 35 H 0.07 1.54 7.40 -2.39 -0.02 1.52 16 36 H 0.40 14.03 8.04 -92.71 -0.75 13.29 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.17 6.21 -2.38 -0.01 2.16 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.99 7.56 -2.39 -0.02 1.97 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.03 1.78 7.05 -2.38 -0.02 1.77 16 45 H 0.00 -0.08 7.98 -2.39 -0.02 -0.10 16 46 H 0.06 2.36 7.78 -2.39 -0.02 2.34 16 47 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 49 H 0.07 1.61 7.68 -2.39 -0.02 1.59 16 50 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.04 0.85 7.91 -2.39 -0.02 0.83 16 52 H 0.02 0.45 7.98 -2.39 -0.02 0.43 16 53 H 0.07 1.19 7.38 -2.39 -0.02 1.17 16 54 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -62.45 400.61 -0.20 -62.66 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.12 Total: 33.46 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 6.03 Total: 4.83 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -8.35 Total: -126.58 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.04 Total: -20.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.45 -0.20 -62.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990760708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.372 kcal (2) G-P(sol) polarization free energy of solvation -62.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds