Wall clock time and date at job start Sat Apr 11 2020 04:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47252 * 2 1 4 4 N 1.46897 * 109.46963 * 120.00476 * 2 1 3 5 5 C 1.47446 * 110.99993 * 57.87728 * 4 2 1 6 6 C 1.54323 * 107.23255 * 123.26010 * 5 4 2 7 7 C 1.55145 * 103.01927 * 22.27894 * 6 5 4 8 8 C 1.47849 * 110.99987 * 178.72352 * 4 2 1 9 9 H 1.09000 * 110.36807 * 332.57007 * 8 4 2 10 10 C 1.52997 * 110.37391 * 94.80297 * 8 4 2 11 11 C 1.50703 * 109.46772 * 185.69379 * 10 8 4 12 12 O 1.21278 * 120.00191 * 358.43330 * 11 10 8 13 13 N 1.34780 * 119.99679 * 178.44112 * 11 10 8 14 14 C 1.47162 * 120.70577 * 179.97438 * 13 11 10 15 15 C 1.53896 * 108.02648 * 132.75680 * 14 13 11 16 16 H 1.09000 * 112.09302 * 181.90978 * 15 14 13 17 17 C 1.54546 * 107.82998 * 306.50335 * 15 14 13 18 18 C 1.54284 * 104.85022 * 89.07449 * 17 15 14 19 19 C 1.54544 * 104.84800 * 359.97438 * 18 17 15 20 20 H 1.08997 * 112.17975 * 146.40843 * 19 18 17 21 21 C 1.47168 * 120.70895 * 359.71973 * 13 11 10 22 22 N 1.48303 * 107.20719 * 58.35919 * 15 14 13 23 23 C 1.36944 * 128.07635 * 106.70370 * 22 15 14 24 24 H 1.08000 * 119.99694 * 17.92386 * 23 22 15 25 25 C 1.38812 * 120.00017 * 197.92537 * 23 22 15 26 26 N 1.31620 * 120.00180 * 356.89119 * 25 23 22 27 27 Si 1.86801 * 119.99710 * 176.88865 * 25 23 22 28 28 H 1.48505 * 109.46839 * 90.00437 * 27 25 23 29 29 H 1.48502 * 109.47229 * 210.00050 * 27 25 23 30 30 H 1.48494 * 109.47272 * 330.00218 * 27 25 23 31 31 H 1.09000 * 109.47073 * 299.99847 * 1 2 3 32 32 H 1.09005 * 109.47358 * 59.99375 * 1 2 3 33 33 H 1.09005 * 109.47641 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47073 * 240.00153 * 2 1 3 35 35 H 1.08997 * 109.47102 * 185.85890 * 3 2 1 36 36 H 1.08994 * 109.47298 * 305.86052 * 3 2 1 37 37 H 1.09004 * 109.46907 * 65.85987 * 3 2 1 38 38 H 1.08999 * 109.89022 * 242.65876 * 5 4 2 39 39 H 1.08997 * 109.89009 * 3.69042 * 5 4 2 40 40 H 1.08996 * 110.70892 * 140.66115 * 6 5 4 41 41 H 1.08998 * 110.70708 * 263.72934 * 6 5 4 42 42 H 1.08992 * 110.99080 * 206.25341 * 7 6 5 43 43 H 1.09006 * 110.98731 * 82.43727 * 7 6 5 44 44 H 1.09003 * 109.46747 * 65.69754 * 10 8 4 45 45 H 1.08999 * 109.47254 * 305.69599 * 10 8 4 46 46 H 1.08992 * 109.74966 * 252.38149 * 14 13 11 47 47 H 1.08995 * 109.75299 * 13.07947 * 14 13 11 48 48 H 1.08995 * 110.36454 * 207.91749 * 17 15 14 49 49 H 1.08999 * 110.36395 * 330.23313 * 17 15 14 50 50 H 1.09000 * 110.36196 * 241.15438 * 18 17 15 51 51 H 1.08997 * 110.45716 * 118.88578 * 18 17 15 52 52 H 1.09001 * 109.75078 * 346.87813 * 21 13 11 53 53 H 1.09000 * 109.74522 * 107.61264 * 21 13 11 54 54 H 0.96999 * 119.99801 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5056 -2.0733 1.2591 6 6 2.7272 -3.0126 1.3430 7 6 3.8420 -2.0875 1.8983 8 6 3.4973 -0.7390 1.2183 9 1 3.8907 -0.7131 0.2021 10 6 4.0564 0.4277 2.0349 11 6 5.5594 0.4425 1.9256 12 8 6.1292 -0.4142 1.2835 13 7 6.2704 1.4076 2.5417 14 6 7.7386 1.4367 2.4459 15 6 8.1650 2.8747 2.1017 16 1 9.2447 2.9645 1.9816 17 6 7.3867 3.3098 0.8394 18 6 6.0798 3.9306 1.3752 19 6 6.1869 3.8137 2.9124 20 1 5.7096 4.6501 3.4230 21 6 5.5946 2.4581 3.3200 22 7 7.6455 3.7554 3.1759 23 6 8.3482 4.3709 4.1772 24 1 9.4190 4.4851 4.0940 25 6 7.6844 4.8478 5.2991 26 7 6.3730 4.7637 5.3732 27 14 8.6524 5.6090 6.7038 28 1 8.7941 7.0692 6.4731 29 1 7.9340 5.3774 7.9827 30 1 9.9985 4.9857 6.7722 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1249 1.4442 -0.1049 36 1 1.5936 1.9857 -0.8328 37 1 1.7649 1.9251 0.9378 38 1 0.8805 -2.1983 2.1431 39 1 0.9270 -2.2927 0.3618 40 1 2.5331 -3.8369 2.0292 41 1 2.9921 -3.3895 0.3551 42 1 4.8280 -2.4378 1.5933 43 1 3.7768 -2.0055 2.9833 44 1 3.7692 0.3104 3.0798 45 1 3.6550 1.3655 1.6507 46 1 8.1758 1.1413 3.3996 47 1 8.0701 0.7558 1.6620 48 1 7.9566 4.0508 0.2790 49 1 7.1669 2.4456 0.2127 50 1 5.2175 3.3716 1.0117 51 1 6.0053 4.9767 1.0783 52 1 4.5258 2.4449 3.1064 53 1 5.7602 2.2920 4.3845 54 1 5.9092 5.0967 6.1574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029338154.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:31:30 Heat of formation + Delta-G solvation = -10.862525 kcal Electronic energy + Delta-G solvation = -31795.457892 eV Core-core repulsion = 27960.199312 eV Total energy + Delta-G solvation = -3835.258579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.69794 -40.51289 -39.10167 -35.42473 -35.25281 -34.27114 -33.09785 -31.98150 -31.02826 -30.06980 -28.51498 -27.73352 -26.89360 -25.38804 -25.24807 -22.69631 -21.96864 -21.31886 -21.00145 -20.66370 -20.07109 -18.56223 -17.74575 -17.28874 -16.97445 -16.89430 -16.59158 -16.01153 -15.65377 -15.52586 -15.28384 -14.67269 -14.59767 -14.49164 -14.40626 -14.06607 -14.00521 -13.53282 -13.39986 -13.32879 -13.18871 -13.05544 -12.94655 -12.84143 -12.77876 -12.68624 -12.54791 -12.22409 -12.02000 -11.98989 -11.84489 -11.83751 -11.70689 -11.56552 -11.51507 -11.41211 -11.39721 -11.11318 -10.85380 -10.50564 -9.67990 -9.25815 -8.65570 -7.82071 -5.21282 1.49660 1.51621 1.58692 1.73639 2.11496 2.51747 2.95855 3.35179 3.51844 3.64086 3.71067 3.84665 3.99503 4.12094 4.14046 4.16571 4.17172 4.23163 4.23559 4.36267 4.39836 4.43510 4.47471 4.49943 4.61103 4.68104 4.74429 4.78831 4.81456 4.83434 4.90103 4.95861 4.99394 5.01255 5.01828 5.04681 5.06155 5.08566 5.16210 5.18318 5.18953 5.32218 5.37111 5.39345 5.40905 5.44402 5.57164 5.65036 5.87927 6.05875 6.24837 6.29741 6.63970 7.11115 7.28391 7.73898 8.53948 9.26844 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.003221 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.232341 B = 8690.352255 C = 8849.493050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 C -0.149 4.149 4 N -0.529 5.529 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.122 4.122 8 C 0.101 3.899 9 H 0.046 0.954 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.585 6.585 13 N -0.593 5.593 14 C 0.109 3.891 15 C 0.130 3.870 16 H 0.080 0.920 17 C -0.113 4.113 18 C -0.126 4.126 19 C 0.158 3.842 20 H 0.098 0.902 21 C 0.120 3.880 22 N -0.605 5.605 23 C -0.237 4.237 24 H 0.073 0.927 25 C -0.046 4.046 26 N -0.932 5.932 27 Si 0.968 3.032 28 H -0.289 1.289 29 H -0.295 1.295 30 H -0.277 1.277 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.088 0.912 53 H 0.041 0.959 54 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -10.188 -10.598 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.207 4.207 4 N -0.254 5.254 5 C -0.084 4.084 6 C -0.175 4.175 7 C -0.160 4.160 8 C -0.008 4.008 9 H 0.064 0.936 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.467 6.467 13 N -0.325 5.325 14 C -0.016 4.016 15 C 0.022 3.978 16 H 0.099 0.901 17 C -0.152 4.152 18 C -0.165 4.165 19 C 0.051 3.949 20 H 0.116 0.884 21 C -0.004 4.004 22 N -0.327 5.327 23 C -0.365 4.365 24 H 0.091 0.909 25 C -0.241 4.241 26 N -0.579 5.579 27 Si 0.797 3.203 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.203 1.203 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.074 0.926 52 H 0.106 0.894 53 H 0.060 0.940 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.647 -10.205 -10.256 18.574 hybrid contribution 1.143 0.140 0.519 1.263 sum -10.504 -10.065 -9.736 17.505 Atomic orbital electron populations 1.21872 0.92807 1.02432 1.02614 1.21842 0.96682 0.95030 0.90257 1.21993 1.00333 0.95499 1.02829 1.63490 1.06329 1.16564 1.39003 1.22864 0.96847 0.86231 1.02435 1.22771 0.94756 0.98399 1.01556 1.22678 0.98919 0.94404 1.00028 1.22001 0.87460 0.93962 0.97369 0.93639 1.21731 0.89533 1.01546 1.03162 1.21028 0.90783 0.80137 0.78073 1.90590 1.73269 1.39004 1.43872 1.48207 1.06972 1.27226 1.50079 1.22146 0.80323 0.98891 1.00210 1.22136 0.97481 0.88821 0.89346 0.90148 1.22367 0.96655 0.99638 0.96490 1.22555 0.97183 0.99776 0.96974 1.21895 0.85358 0.95635 0.92020 0.88407 1.22181 0.95928 0.88214 0.94049 1.45327 1.03932 1.53262 1.30195 1.19244 0.91631 1.30460 0.95210 0.90903 1.25494 0.96767 1.02605 0.99249 1.69896 1.06763 1.51924 1.29313 0.85254 0.77903 0.77908 0.79209 1.21566 1.22175 1.20281 0.92103 0.91146 0.91958 0.94742 0.93814 0.90863 0.91729 0.89918 0.91277 0.89478 0.91534 0.91843 0.91505 0.88574 0.87498 0.94192 0.90088 0.91773 0.91966 0.91511 0.92573 0.89401 0.94026 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.02 71.98 0.65 -1.40 16 2 C 0.07 1.32 2.30 44.92 0.10 1.42 16 3 C -0.15 -2.90 7.81 71.98 0.56 -2.33 16 4 N -0.53 -11.24 4.71 -835.63 -3.93 -15.18 16 5 C 0.04 0.77 6.14 86.65 0.53 1.30 16 6 C -0.14 -2.55 6.94 31.78 0.22 -2.32 16 7 C -0.12 -3.04 5.88 31.98 0.19 -2.85 16 8 C 0.10 2.57 1.45 45.38 0.07 2.64 16 9 H 0.05 1.32 7.40 -2.39 -0.02 1.30 16 10 C -0.12 -3.34 3.54 29.85 0.11 -3.24 16 11 C 0.51 17.67 7.53 87.66 0.66 18.33 16 12 O -0.59 -22.78 14.17 -3.02 -0.04 -22.82 16 13 N -0.59 -22.08 2.26 -815.84 -1.85 -23.93 16 14 C 0.11 4.25 5.90 86.56 0.51 4.77 16 15 C 0.13 5.15 4.32 45.47 0.20 5.34 16 16 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 17 C -0.11 -3.90 6.18 31.56 0.20 -3.71 16 18 C -0.13 -4.48 6.18 31.55 0.20 -4.29 16 19 C 0.16 6.82 3.16 45.31 0.14 6.96 16 20 H 0.10 4.88 6.12 -2.39 -0.01 4.87 16 21 C 0.12 4.74 5.72 86.40 0.49 5.23 16 22 N -0.61 -28.63 2.82 -637.45 -1.80 -30.43 16 23 C -0.24 -12.42 10.38 84.03 0.87 -11.55 16 24 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 25 C -0.05 -2.45 5.49 84.86 0.47 -1.98 16 26 N -0.93 -50.42 10.46 21.65 0.23 -50.20 16 27 Si 0.97 43.63 29.55 68.60 2.03 45.65 16 28 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 29 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 30 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.06 0.82 6.37 -2.38 -0.02 0.80 16 34 H 0.03 0.68 8.06 -2.39 -0.02 0.66 16 35 H 0.04 0.97 6.20 -2.39 -0.01 0.96 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.30 7.79 -2.38 -0.02 1.29 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.04 6.19 -2.39 -0.01 1.03 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.84 7.30 -2.39 -0.02 1.82 16 43 H 0.07 1.69 7.96 -2.38 -0.02 1.68 16 44 H 0.10 2.68 7.99 -2.39 -0.02 2.66 16 45 H 0.11 2.81 4.56 -2.39 -0.01 2.80 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 3.03 7.11 -2.39 -0.02 3.01 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 50 H 0.07 2.12 7.83 -2.39 -0.02 2.10 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.09 2.96 6.07 -2.39 -0.01 2.95 16 53 H 0.04 1.94 8.06 -2.39 -0.02 1.92 16 54 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -58.96 393.64 1.66 -57.30 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.86 Total: 27.28 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.16 Total: 12.32 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -7.35 Total: -119.73 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.04 Total: -22.82 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -58.96 1.66 -57.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029338154.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -58.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds