Wall clock time and date at job start Sat Apr 11 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00367 * 2 1 4 4 O 1.20821 * 119.99828 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00394 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47177 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.46831 * 180.02562 * 6 5 3 8 8 C 1.36756 * 119.99960 * 268.93017 * 7 6 5 9 9 H 1.08004 * 120.00146 * 136.82215 * 8 7 6 10 10 C 1.39124 * 120.00288 * 316.82152 * 8 7 6 11 11 N 1.31316 * 119.99869 * 343.72388 * 10 8 7 12 12 Si 1.86803 * 120.00344 * 163.72896 * 10 8 7 13 13 H 1.48496 * 109.47309 * 89.99387 * 12 10 8 14 14 H 1.48497 * 109.46995 * 209.99841 * 12 10 8 15 15 H 1.48499 * 109.46496 * 329.99610 * 12 10 8 16 16 C 1.34778 * 120.00004 * 88.93127 * 7 6 5 17 17 O 1.21599 * 119.99917 * 4.60707 * 16 7 6 18 18 C 1.47742 * 119.99971 * 184.60482 * 16 7 6 19 19 C 1.39772 * 119.99410 * 324.37413 * 18 16 7 20 20 C 1.37630 * 120.03085 * 179.69406 * 19 18 16 21 21 C 1.39749 * 120.01841 * 0.60513 * 20 19 18 22 22 C 1.43203 * 120.00792 * 179.69559 * 21 20 19 23 23 N 9.57141 * 167.04050 * 32.85478 * 5 1 2 24 24 C 1.39820 * 119.98271 * 359.41356 * 21 20 19 25 25 Cl 1.73597 * 120.01968 * 180.30285 * 24 21 20 26 26 C 1.37861 * 119.96658 * 0.28162 * 24 21 20 27 27 H 1.09004 * 109.46889 * 299.99724 * 1 2 3 28 28 H 1.08999 * 109.47270 * 59.99512 * 1 2 3 29 29 H 1.08999 * 109.47446 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46600 * 59.99991 * 5 3 2 31 31 H 1.09002 * 109.46933 * 300.00703 * 5 3 2 32 32 H 1.08995 * 109.47135 * 60.00488 * 6 5 3 33 33 H 1.09000 * 109.47201 * 299.99846 * 6 5 3 34 34 H 0.96997 * 120.00150 * 180.02562 * 11 10 8 35 35 H 1.07992 * 119.97967 * 0.02562 * 19 18 16 36 36 H 1.07997 * 119.98669 * 180.29461 * 20 19 18 37 37 H 1.08003 * 120.01193 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1450 2.8760 1.1852 9 1 7.0378 2.2843 1.3235 10 6 5.6884 3.6966 2.2117 11 7 4.8143 4.6427 1.9564 12 14 6.3190 3.4527 3.9531 13 1 7.5308 4.2851 4.1619 14 1 5.2680 3.8567 4.9212 15 1 6.6594 2.0222 4.1603 16 6 6.1373 2.8325 -1.1660 17 8 5.5296 2.8661 -2.2187 18 6 7.6145 2.8070 -1.1662 19 6 8.3251 3.4782 -0.1671 20 6 9.7011 3.4496 -0.1630 21 6 10.3891 2.7600 -1.1651 22 6 11.8209 2.7359 -1.1643 23 7 12.9567 2.7170 -1.1633 24 6 9.6789 2.0886 -2.1651 25 17 10.5325 1.2251 -3.4058 26 6 8.3005 2.1124 -2.1650 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.9564 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6103 3.2359 0.8911 33 1 3.6109 3.2363 -0.8889 34 1 4.4963 5.2151 2.6720 35 1 7.7940 4.0149 0.6049 36 1 10.2493 3.9645 0.6120 37 1 7.7513 1.5944 -2.9373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:33:59 Heat of formation + Delta-G solvation = -64.433785 kcal Electronic energy + Delta-G solvation = -25778.702152 eV Core-core repulsion = 21740.778672 eV Total energy + Delta-G solvation = -4037.923479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19847 -39.78908 -38.28404 -36.46155 -36.35774 -36.12781 -35.25053 -32.31662 -31.68375 -30.92357 -30.21594 -27.61300 -25.48200 -25.03304 -23.03897 -22.45419 -20.47777 -19.65005 -18.92893 -18.00564 -17.32324 -16.39054 -16.29183 -16.14503 -15.67170 -15.15284 -14.62282 -14.42138 -14.23564 -14.11847 -13.81185 -13.66577 -13.61802 -13.10170 -12.79596 -12.68978 -12.66330 -12.34504 -12.18305 -12.08966 -11.81749 -11.45852 -11.38275 -11.24210 -11.13464 -10.95321 -10.88664 -10.62846 -10.59331 -10.25354 -10.13103 -9.43104 -8.93708 -8.80553 -8.53461 -7.80394 -6.66173 -4.44009 0.61889 1.36964 2.03511 2.56382 2.68570 2.82925 2.92586 2.99258 3.07537 3.09169 3.59968 3.84629 3.88470 4.09644 4.38566 4.69435 4.88050 5.15069 5.18336 5.24257 5.36799 5.45138 5.51341 5.56003 5.66093 5.71225 5.81775 5.92555 6.12035 6.17823 6.42632 6.62321 6.66736 6.72710 6.90745 7.08216 7.20164 7.48489 7.59896 8.02533 8.08055 8.72415 9.09314 9.54473 10.34283 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003723 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.493216 B = 7518.938877 C = 9319.137323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.128 3.872 7 N -0.421 5.421 8 C -0.362 4.362 9 H 0.098 0.902 10 C 0.051 3.949 11 N -0.842 5.842 12 Si 0.910 3.090 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.507 3.493 17 O -0.588 6.588 18 C -0.047 4.047 19 C -0.065 4.065 20 C -0.078 4.078 21 C -0.024 4.024 22 C 0.261 3.739 23 N -0.418 5.418 24 C -0.008 4.008 25 Cl -0.065 7.065 26 C -0.075 4.075 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.277 0.723 35 H 0.179 0.821 36 H 0.141 0.859 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -6.092 -0.729 6.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.004 3.996 7 N -0.137 5.137 8 C -0.489 4.489 9 H 0.115 0.885 10 C -0.159 4.159 11 N -0.476 5.476 12 Si 0.735 3.265 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.189 1.189 16 C 0.296 3.704 17 O -0.473 6.473 18 C -0.052 4.052 19 C -0.083 4.083 20 C -0.099 4.099 21 C -0.029 4.029 22 C -0.054 4.054 23 N -0.094 5.094 24 C -0.038 4.038 25 Cl -0.036 7.036 26 C -0.095 4.095 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.196 0.804 36 H 0.159 0.841 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.391 -5.708 -1.224 6.001 hybrid contribution -0.346 -0.172 0.869 0.952 sum 1.045 -5.880 -0.354 5.982 Atomic orbital electron populations 1.23180 0.77220 1.03107 1.02380 1.86533 1.22843 1.34310 1.84602 1.24003 0.92328 0.80948 0.71818 1.90660 1.67271 1.36218 1.45006 1.21882 0.86103 1.02997 1.05438 1.21186 0.81751 0.91134 1.05501 1.43160 1.04603 1.61424 1.04514 1.19496 1.12424 1.26223 0.90741 0.88451 1.25515 0.96459 0.93511 1.00388 1.69844 1.28863 1.14856 1.34002 0.86198 0.79001 0.79512 0.81824 1.19638 1.20469 1.18882 1.18246 0.86162 0.81399 0.84621 1.90691 1.69305 1.55693 1.31633 1.20255 0.95134 0.95985 0.93785 1.22381 0.92468 0.95928 0.97510 1.21222 0.94614 0.97498 0.96550 1.15917 0.84340 1.04292 0.98327 1.25526 0.92512 0.93682 0.93657 1.81180 1.11889 1.08442 1.07847 1.20647 0.92259 0.98953 0.91900 1.98375 1.77239 1.75373 1.52628 1.21022 0.90674 0.98842 0.98919 0.92130 0.92120 0.88569 0.88353 0.87496 0.86950 0.91035 0.91254 0.80382 0.84134 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.46 10.56 -39.25 -0.41 -5.87 16 3 C 0.47 8.14 7.96 36.01 0.29 8.43 16 4 O -0.50 -10.15 15.73 -18.75 -0.29 -10.45 16 5 C -0.13 -2.20 6.13 -27.88 -0.17 -2.37 16 6 C 0.13 2.71 4.29 -4.04 -0.02 2.69 16 7 N -0.42 -8.92 2.47 -115.93 -0.29 -9.21 16 8 C -0.36 -7.41 6.07 -15.03 -0.09 -7.50 16 9 H 0.10 1.87 6.48 -52.48 -0.34 1.53 16 10 C 0.05 1.07 4.96 -17.44 -0.09 0.99 16 11 N -0.84 -19.43 11.57 55.50 0.64 -18.79 16 12 Si 0.91 16.50 29.58 -169.99 -5.03 11.47 16 13 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 14 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 15 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 16 C 0.51 10.65 7.36 -12.38 -0.09 10.56 16 17 O -0.59 -13.79 16.40 5.28 0.09 -13.70 16 18 C -0.05 -0.83 5.46 -104.91 -0.57 -1.40 16 19 C -0.06 -1.02 7.77 -39.23 -0.30 -1.32 16 20 C -0.08 -1.04 9.73 -39.24 -0.38 -1.42 16 21 C -0.02 -0.33 5.74 -106.81 -0.61 -0.95 16 22 C 0.26 3.77 14.36 -22.47 -0.32 3.45 16 23 N -0.42 -6.59 18.54 41.84 0.78 -5.81 16 24 C -0.01 -0.12 6.34 -39.13 -0.25 -0.37 16 25 Cl -0.07 -0.87 28.01 -51.86 -1.45 -2.32 16 26 C -0.07 -1.16 9.37 -39.19 -0.37 -1.53 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.11 2.60 5.72 -51.93 -0.30 2.30 16 33 H 0.07 1.65 7.35 -51.93 -0.38 1.27 16 34 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 35 H 0.18 3.06 5.65 -52.49 -0.30 2.76 16 36 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.15 2.20 8.00 -52.48 -0.42 1.78 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -26.41 350.56 -6.01 -32.42 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.41 Total: 6.26 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -1.92 Total: 10.72 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 1.13 Total: -33.81 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.62 Total: -30.02 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.47 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.45 Total: -2.32 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.41 -6.01 -32.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.017 kcal (2) G-P(sol) polarization free energy of solvation -26.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds