Wall clock time and date at job start Sat Apr 11 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47258 * 2 1 4 4 C 1.52999 * 109.46990 * 240.00228 * 2 1 3 5 5 C 1.53007 * 109.46881 * 174.99953 * 4 2 1 6 6 N 1.46498 * 109.46744 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99856 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99848 * 0.02562 * 7 6 5 9 9 C 1.47189 * 120.00170 * 180.02562 * 7 6 5 10 10 C 1.44426 * 123.46049 * 353.46450 * 9 7 6 11 11 C 1.32773 * 113.08452 * 179.80675 * 10 9 7 12 12 S 1.75504 * 110.57448 * 0.44471 * 11 10 9 13 13 C 1.36012 * 123.46290 * 173.75738 * 9 7 6 14 14 C 1.50701 * 124.58984 * 359.97438 * 13 9 7 15 15 F 1.39900 * 109.46996 * 76.02970 * 14 13 9 16 16 F 1.39898 * 109.46869 * 196.03286 * 14 13 9 17 17 F 1.39898 * 109.46826 * 316.02908 * 14 13 9 18 18 N 1.46499 * 109.47169 * 119.99894 * 2 1 3 19 19 C 1.36935 * 120.00171 * 274.99885 * 18 2 1 20 20 H 1.08000 * 119.99955 * 359.97438 * 19 18 2 21 21 C 1.38815 * 119.99941 * 179.72506 * 19 18 2 22 22 N 1.31619 * 119.99799 * 0.27552 * 21 19 18 23 23 Si 1.86801 * 119.99944 * 180.27724 * 21 19 18 24 24 H 1.48503 * 109.46930 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47166 * 119.99752 * 23 21 19 26 26 H 1.48494 * 109.47073 * 239.99919 * 23 21 19 27 27 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47315 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.47152 * 59.99728 * 1 2 3 30 30 H 1.09001 * 109.46733 * 294.99752 * 4 2 1 31 31 H 1.08998 * 109.47640 * 55.00006 * 4 2 1 32 32 H 1.08991 * 109.47265 * 299.99456 * 5 4 2 33 33 H 1.09001 * 109.46688 * 60.00083 * 5 4 2 34 34 H 0.97005 * 120.00511 * 0.02562 * 6 5 4 35 35 H 1.08003 * 123.45654 * 0.02562 * 10 9 7 36 36 H 1.08000 * 124.71356 * 180.21536 * 11 10 9 37 37 H 0.96998 * 119.99634 * 95.00454 * 18 2 1 38 38 H 0.97005 * 119.99516 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0531 -1.3043 -2.5096 7 6 5.3741 -1.3406 -2.7747 8 8 6.1607 -0.8000 -2.0208 9 6 5.8647 -2.0345 -3.9765 10 6 5.0170 -2.8147 -4.8474 11 6 5.6725 -3.3467 -5.8722 12 16 7.3735 -2.9198 -5.8048 13 6 7.1641 -2.0114 -4.3778 14 6 8.2689 -1.2815 -3.6583 15 9 8.6370 -2.0014 -2.5167 16 9 9.3741 -1.1554 -4.5067 17 9 7.8211 -0.0102 -3.2838 18 7 2.0183 -0.6906 1.1962 19 6 2.1491 -0.0075 2.3757 20 1 1.8927 1.0405 2.4241 21 6 2.6064 -0.6632 3.5105 22 7 2.9194 -1.9403 3.4514 23 14 2.7775 0.2667 5.1215 24 1 2.3649 1.6795 4.9237 25 1 1.9119 -0.3628 6.1509 26 1 4.1923 0.2230 5.5704 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7515 -1.7715 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 3.8531 0.4370 -1.3574 33 1 3.9993 -1.0728 -0.4260 34 1 3.4258 -1.7358 -3.1106 35 1 3.9578 -2.9487 -4.6838 36 1 5.2223 -3.9601 -6.6386 37 1 2.2490 -1.6317 1.1526 38 1 3.2393 -2.3984 4.2443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663005519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:33:20 Heat of formation + Delta-G solvation = -143.844597 kcal Electronic energy + Delta-G solvation = -26671.410635 eV Core-core repulsion = 22226.063706 eV Total energy + Delta-G solvation = -4445.346930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.12258 -47.71981 -47.47234 -40.01908 -37.44821 -36.52110 -34.47306 -32.26291 -31.33673 -29.54818 -28.29611 -26.63212 -24.29759 -23.63749 -22.50579 -21.74088 -20.24753 -19.67780 -19.36553 -18.44653 -18.12355 -17.19992 -16.86742 -16.20389 -15.59928 -15.47743 -14.88381 -14.71635 -14.58226 -14.41673 -14.11013 -13.91584 -13.81124 -13.67715 -13.54548 -13.44926 -13.40960 -12.98266 -12.77648 -12.50054 -12.36580 -12.05345 -11.56693 -11.52183 -11.10300 -10.92370 -10.74823 -10.63576 -10.29529 -10.03609 -9.82046 -9.76249 -9.62526 -9.07102 -8.90474 -8.79645 -6.93603 -5.73252 -3.01983 -0.00970 0.75965 1.24560 1.50920 2.49107 3.17616 3.19429 3.46998 3.52730 3.54862 3.57550 4.15953 4.26577 4.32683 4.62922 4.69013 4.74357 5.18092 5.29286 5.36360 5.38124 5.56616 5.58305 5.67419 5.87013 6.05210 6.17005 6.32199 6.38351 6.43629 6.62257 6.69095 6.86074 7.05781 7.50616 7.74604 8.20417 8.45028 9.56639 10.12799 10.47255 11.49433 Molecular weight = 336.09amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002865 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.837042 B = 9769.729713 C =10886.809645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.714 5.714 7 C 0.558 3.442 8 O -0.511 6.511 9 C -0.084 4.084 10 C -0.115 4.115 11 C -0.210 4.210 12 S 0.260 5.740 13 C -0.285 4.285 14 C 0.545 3.455 15 F -0.161 7.161 16 F -0.181 7.181 17 F -0.149 7.149 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.292 1.292 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.396 0.604 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.383 0.617 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.564 -3.835 -25.515 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.366 5.366 7 C 0.341 3.659 8 O -0.387 6.387 9 C -0.104 4.104 10 C -0.144 4.144 11 C -0.346 4.346 12 S 0.528 5.472 13 C -0.406 4.406 14 C 0.489 3.511 15 F -0.143 7.143 16 F -0.163 7.163 17 F -0.130 7.130 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.230 0.770 35 H 0.178 0.822 36 H 0.198 0.802 37 H 0.217 0.783 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.423 -3.619 -25.713 27.007 hybrid contribution -1.359 0.267 1.701 2.194 sum 6.064 -3.352 -24.012 24.992 Atomic orbital electron populations 1.22426 0.99120 1.00816 0.99984 1.20147 0.91884 0.95606 0.85967 0.93241 1.22070 0.93719 1.01862 0.99463 1.21540 0.94509 0.97314 0.86699 1.45918 1.06378 1.56612 1.27649 1.17503 0.83213 0.80702 0.84493 1.90937 1.54950 1.44572 1.48273 1.20451 0.91558 1.00568 0.97854 1.21267 1.01181 0.98135 0.93782 1.25800 0.97634 1.07018 1.04150 1.83154 1.06186 1.41781 1.16090 1.24779 0.98135 1.11233 1.06486 1.16989 0.79229 0.78044 0.76845 1.93260 1.91878 1.77726 1.51395 1.93189 1.56051 1.96099 1.70955 1.93311 1.88653 1.39577 1.91413 1.42460 1.78086 1.10656 1.05384 1.19261 1.36582 0.93815 0.87232 0.91155 1.24724 1.02156 0.95941 0.98037 1.69665 1.51032 1.08648 1.28696 0.86151 0.77326 0.78796 0.84131 1.20573 1.21980 1.21865 0.93533 0.92695 0.94582 0.91548 0.91867 0.91431 0.89359 0.76991 0.82163 0.80150 0.78295 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.15 0.35 -2.44 16 2 C 0.17 3.28 2.89 -67.93 -0.20 3.09 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 C -0.13 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.98 5.56 -4.04 -0.02 1.96 16 6 N -0.71 -9.43 5.53 -61.46 -0.34 -9.77 16 7 C 0.56 8.55 7.62 -12.63 -0.10 8.45 16 8 O -0.51 -10.08 12.89 5.25 0.07 -10.01 16 9 C -0.08 -1.00 5.95 -104.63 -0.62 -1.62 16 10 C -0.11 -0.87 9.90 -39.02 -0.39 -1.26 16 11 C -0.21 -1.22 11.12 28.86 0.32 -0.90 16 12 S 0.26 1.94 22.43 -107.50 -2.41 -0.47 16 13 C -0.29 -3.38 5.80 -35.11 -0.20 -3.59 16 14 C 0.55 7.70 2.83 36.01 0.10 7.80 16 15 F -0.16 -2.58 16.85 2.25 0.04 -2.54 16 16 F -0.18 -2.22 16.80 2.25 0.04 -2.18 16 17 F -0.15 -2.45 14.31 2.25 0.03 -2.42 16 18 N -0.72 -17.62 4.57 -53.43 -0.24 -17.87 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 23 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 34 H 0.40 3.70 7.06 -40.82 -0.29 3.41 16 35 H 0.16 0.78 7.14 -52.48 -0.37 0.41 16 36 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -34.03 349.67 -7.29 -41.32 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.31 Total: 6.30 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.13 Total: 2.25 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.14 Total: -55.26 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.41 Total: -0.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.03 -7.29 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663005519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.529 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds