Wall clock time and date at job start Sat Apr 11 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47415 * 271.95458 * 3 2 1 5 5 S 1.65595 * 120.00403 * 164.99842 * 4 3 2 6 6 O 1.42104 * 106.40528 * 311.46726 * 5 4 3 7 7 O 1.42098 * 106.40734 * 178.54274 * 5 4 3 8 8 C 1.76207 * 107.21571 * 65.00462 * 5 4 3 9 9 C 1.38367 * 119.85128 * 270.25222 * 8 5 4 10 10 C 1.37954 * 120.14173 * 180.25436 * 9 8 5 11 11 C 1.39581 * 119.85304 * 359.49191 * 10 9 8 12 12 C 1.47846 * 120.14415 * 180.27302 * 11 10 9 13 13 O 1.21558 * 119.99978 * 328.11092 * 12 11 10 14 14 N 1.34777 * 119.99957 * 148.11157 * 12 11 10 15 15 C 1.46497 * 119.99676 * 4.29405 * 14 12 11 16 16 C 1.46500 * 119.99778 * 184.29976 * 14 12 11 17 17 C 1.50702 * 109.47249 * 89.99600 * 16 14 12 18 18 H 1.08000 * 119.99664 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99982 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47020 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46928 * 120.00085 * 21 19 17 24 24 H 1.48497 * 109.46867 * 239.99923 * 21 19 17 25 25 C 1.39573 * 119.71225 * 0.25561 * 11 10 9 26 26 C 1.37955 * 119.85245 * 359.97438 * 25 11 10 27 27 H 4.40639 * 5.51414 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47139 * 151.95770 * 3 2 1 29 29 H 1.09002 * 109.47538 * 31.95466 * 3 2 1 30 30 H 0.97001 * 119.99702 * 345.00612 * 4 3 2 31 31 H 1.07997 * 119.92715 * 0.02562 * 9 8 5 32 32 H 1.08002 * 120.07071 * 179.77053 * 10 9 8 33 33 H 1.09003 * 109.46683 * 94.49074 * 15 14 12 34 34 H 1.09003 * 109.46605 * 214.48789 * 15 14 12 35 35 H 1.08994 * 109.47647 * 334.48547 * 15 14 12 36 36 H 1.08996 * 109.46737 * 209.99608 * 16 14 12 37 37 H 1.09002 * 109.47242 * 329.99738 * 16 14 12 38 38 H 0.97000 * 119.99917 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.07760 * 180.02562 * 25 11 10 40 40 H 1.08004 * 119.93016 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0462 1.3804 5 16 4.7166 -0.4274 1.6865 6 8 5.0017 -1.5956 0.9293 7 8 4.8813 -0.3554 3.0960 8 6 5.7050 0.8616 1.0036 9 6 6.1448 0.7725 -0.3052 10 6 6.9234 1.7757 -0.8443 11 6 7.2584 2.8874 -0.0695 12 6 8.0874 3.9692 -0.6426 13 8 8.9309 3.7105 -1.4789 14 7 7.9079 5.2421 -0.2379 15 6 6.9583 5.5421 0.8365 16 6 8.6625 6.3258 -0.8724 17 6 7.8856 6.8564 -2.0497 18 1 6.9261 6.4289 -2.3004 19 6 8.3999 7.8876 -2.8067 20 7 9.5687 8.4079 -2.5016 21 14 7.4367 8.5459 -4.2656 22 1 6.1619 7.7956 -4.3962 23 1 7.1445 9.9867 -4.0563 24 1 8.2384 8.3783 -5.5043 25 6 6.8071 2.9735 1.2484 26 6 6.0332 1.9611 1.7768 27 1 -1.0499 0.0002 0.0001 28 1 3.0089 0.9079 -0.4832 29 1 3.0098 -0.8711 -0.5439 30 1 2.5310 0.1459 2.1151 31 1 5.8811 -0.0860 -0.9050 32 1 7.2691 1.7032 -1.8649 33 1 7.4872 5.5799 1.7888 34 1 6.4854 6.5054 0.6449 35 1 6.1957 4.7643 0.8751 36 1 8.8226 7.1275 -0.1516 37 1 9.6256 5.9464 -1.2139 38 1 9.9306 9.1331 -3.0344 39 1 7.0625 3.8312 1.8530 40 1 5.6829 2.0267 2.7964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072034821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:32:12 Heat of formation + Delta-G solvation = -1.015361 kcal Electronic energy + Delta-G solvation = -25858.305774 eV Core-core repulsion = 21961.009125 eV Total energy + Delta-G solvation = -3897.296649 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19779 -38.09451 -37.59656 -36.47760 -36.16773 -35.18569 -32.92726 -32.69642 -31.55595 -31.27579 -27.90565 -26.95151 -26.40431 -24.41042 -22.98437 -22.40168 -20.06386 -19.42149 -19.19787 -18.24640 -17.47364 -16.95636 -16.65191 -16.64116 -15.92053 -15.37472 -15.05703 -14.85980 -14.76119 -14.59130 -14.32479 -14.08721 -13.73718 -13.68792 -13.12158 -12.68853 -12.55831 -12.51529 -12.41560 -12.34257 -12.23679 -11.99044 -11.35426 -11.34803 -11.12168 -11.03808 -10.98471 -10.87958 -10.68754 -10.26612 -9.96428 -9.76548 -9.49671 -9.23467 -9.12289 -8.53213 -7.84362 -6.14084 -4.19798 -0.03158 0.39696 1.11354 2.08970 2.35787 2.77573 3.01920 3.23561 3.31160 3.33906 3.39643 3.58313 3.76448 3.83357 4.06043 4.35892 4.55574 4.65081 4.68030 4.76925 4.97884 5.05763 5.16256 5.20767 5.27816 5.37776 5.49185 5.51371 5.67447 5.72360 5.83330 5.88373 6.07434 6.16763 6.43301 6.57283 6.89797 7.09604 7.29105 7.35888 7.81278 8.10354 8.16715 8.70880 8.87901 9.45734 10.94146 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002771 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.363540 B =10104.029232 C =11058.684047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.202 4.202 3 C 0.227 3.773 4 N -1.117 6.117 5 S 2.701 3.299 6 O -0.953 6.953 7 O -0.953 6.953 8 C -0.672 4.672 9 C -0.031 4.031 10 C -0.089 4.089 11 C -0.055 4.055 12 C 0.537 3.463 13 O -0.528 6.528 14 N -0.588 5.588 15 C 0.062 3.938 16 C 0.243 3.757 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.900 3.100 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.127 4.127 26 C -0.028 4.028 27 H 0.222 0.778 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.422 0.578 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.305 -15.364 9.725 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.203 4.203 3 C 0.102 3.898 4 N -0.876 5.876 5 S 2.791 3.209 6 O -0.943 6.943 7 O -0.944 6.944 8 C -0.760 4.760 9 C -0.050 4.050 10 C -0.108 4.108 11 C -0.058 4.058 12 C 0.323 3.677 13 O -0.406 6.406 14 N -0.319 5.319 15 C -0.082 4.082 16 C 0.124 3.876 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.728 3.272 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.146 4.146 26 C -0.047 4.047 27 H 0.239 0.761 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.257 0.743 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.172 0.828 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.252 -16.081 9.498 24.113 hybrid contribution -0.815 1.398 -0.884 1.844 sum -16.067 -14.683 8.614 23.408 Atomic orbital electron populations 1.25032 0.95969 1.00593 0.97262 1.22704 0.94028 1.00977 1.02640 1.18167 0.85223 1.03801 0.82575 1.55615 1.28987 1.89255 1.13777 1.01704 0.71984 0.73835 0.73364 1.93600 1.83556 1.44230 1.72907 1.93608 1.84916 1.87004 1.28842 1.30880 1.20750 1.18608 1.05728 1.20881 0.93779 0.97767 0.92571 1.21409 0.96402 0.92046 1.00971 1.20725 0.95285 0.95284 0.94534 1.18184 0.84020 0.82723 0.82797 1.90785 1.34642 1.82566 1.32609 1.48112 1.41054 1.07163 1.35566 1.22333 0.93020 1.02943 0.89888 1.19407 0.92433 0.83017 0.92718 1.21432 1.05228 1.17580 1.12727 0.92325 1.24942 0.95039 0.96386 0.97684 1.69937 1.17397 1.25878 1.39910 0.86413 0.79964 0.78519 0.82349 1.19789 1.20862 1.20766 1.22145 0.97589 0.99586 0.95265 1.20851 0.94407 0.90621 0.98815 0.76148 0.88877 0.87679 0.74321 0.83739 0.83818 0.92841 0.90584 0.90665 0.94555 0.93415 0.92613 0.82767 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 19.25 29.55 0.57 -0.48 16 2 C -0.20 -1.48 13.49 -37.12 -0.50 -1.98 16 3 C 0.23 1.48 6.70 -6.83 -0.05 1.44 16 4 N -1.12 -7.54 5.98 -13.15 -0.08 -7.62 16 5 S 2.70 25.26 5.73 -107.50 -0.62 24.65 16 6 O -0.95 -11.24 16.74 -57.17 -0.96 -12.20 16 7 O -0.95 -11.17 17.27 -57.17 -0.99 -12.16 16 8 C -0.67 -6.97 5.95 -39.49 -0.24 -7.20 16 9 C -0.03 -0.34 9.50 -39.64 -0.38 -0.71 16 10 C -0.09 -1.22 9.60 -39.18 -0.38 -1.60 16 11 C -0.05 -0.85 5.47 -104.97 -0.57 -1.43 16 12 C 0.54 11.03 7.44 -12.33 -0.09 10.94 16 13 O -0.53 -13.08 16.31 5.32 0.09 -12.99 16 14 N -0.59 -12.06 2.86 -184.08 -0.53 -12.59 16 15 C 0.06 0.91 8.80 59.85 0.53 1.44 16 16 C 0.24 6.17 5.21 -5.19 -0.03 6.15 16 17 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 21 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.13 -1.56 7.44 -39.19 -0.29 -1.85 16 26 C -0.03 -0.29 9.50 -39.64 -0.38 -0.67 16 27 H 0.22 0.62 7.80 -54.09 -0.42 0.20 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.11 0.61 7.75 -51.93 -0.40 0.20 16 30 H 0.42 2.22 8.63 -34.47 -0.30 1.92 16 31 H 0.14 1.22 7.61 -52.49 -0.40 0.82 16 32 H 0.14 1.99 7.95 -52.49 -0.42 1.57 16 33 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 34 H 0.08 1.16 8.11 -51.93 -0.42 0.73 16 35 H 0.08 0.92 4.72 -51.93 -0.25 0.68 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.16 1.64 4.80 -52.49 -0.25 1.39 16 40 H 0.14 1.16 7.60 -52.48 -0.40 0.76 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -37.30 364.36 -8.50 -45.81 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.41 Total: -0.15 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.22 Total: -9.30 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.13 Total: -45.44 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.86 Total: -37.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 25.26 SS G_CDS: -0.62 Total: 24.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.30 -8.50 -45.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072034821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.790 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds