Wall clock time and date at job start Sat Apr 11 2020 04:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47480 * 2 1 4 4 C 1.34899 * 117.00567 * 180.02562 * 3 2 1 5 5 O 1.21634 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.46441 * 120.00474 * 180.02562 * 4 3 2 7 7 S 1.75550 * 124.74820 * 0.02562 * 6 4 3 8 8 C 1.75940 * 91.56661 * 179.97438 * 7 6 4 9 9 N 1.34743 * 131.03962 * 179.97438 * 8 7 6 10 10 C 1.29897 * 122.30131 * 179.71151 * 9 8 7 11 11 N 1.35572 * 122.61605 * 0.59945 * 10 9 8 12 12 C 1.46500 * 119.80083 * 179.70954 * 11 10 9 13 13 C 1.52997 * 109.47473 * 269.72709 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.34879 * 120.39993 * 359.43585 * 11 10 9 23 23 O 1.21820 * 120.96240 * 180.27564 * 22 11 10 24 24 C 1.39877 * 109.44119 * 0.02562 * 8 7 6 25 25 C 1.34277 * 124.75405 * 179.97438 * 6 4 3 26 26 C 1.50698 * 122.24619 * 359.97438 * 25 6 4 27 27 H 1.09001 * 109.47076 * 300.00040 * 1 2 3 28 28 H 1.09007 * 109.46741 * 59.99940 * 1 2 3 29 29 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47434 * 239.99558 * 2 1 3 31 31 H 1.09002 * 109.47217 * 120.00038 * 2 1 3 32 32 H 1.08005 * 118.69247 * 180.29272 * 10 9 8 33 33 H 1.09002 * 109.47129 * 149.72451 * 12 11 10 34 34 H 1.08998 * 109.46845 * 29.73258 * 12 11 10 35 35 H 1.09002 * 109.47153 * 59.99757 * 13 12 11 36 36 H 1.09001 * 109.46832 * 299.99948 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.46916 * 270.02445 * 26 25 6 39 39 H 1.09005 * 109.47439 * 30.01875 * 26 25 6 40 40 H 1.08991 * 109.47324 * 150.02442 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3514 1.5457 -0.0005 5 8 4.0924 0.5811 -0.0005 6 6 3.9112 2.8989 0.0000 7 16 2.9608 4.3749 0.0020 8 6 4.4135 5.3675 0.0022 9 7 4.5706 6.7057 0.0030 10 6 5.7420 7.2671 0.0086 11 7 6.8945 6.5532 0.0021 12 6 8.1829 7.2505 0.0025 13 6 8.6312 7.4947 -1.4398 14 6 9.9562 8.2126 -1.4392 15 1 10.4313 8.4686 -0.5038 16 6 10.5625 8.5416 -2.6331 17 7 9.9842 8.2293 -3.7722 18 14 12.2053 9.4307 -2.6324 19 1 12.6409 9.6649 -1.2322 20 1 13.2178 8.6005 -3.3330 21 1 12.0635 10.7332 -3.3315 22 6 6.8621 5.2048 0.0007 23 8 7.8914 4.5532 -0.0001 24 6 5.5420 4.5411 0.0002 25 6 5.2233 3.1845 0.0000 26 6 6.2800 2.1101 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.8001 8.3456 0.0138 33 1 8.9261 6.6403 0.5157 34 1 8.0789 8.2056 0.5174 35 1 7.8879 8.1050 -1.9529 36 1 8.7352 6.5396 -1.9545 37 1 10.4106 8.4611 -4.6121 38 1 6.5344 1.8508 1.0278 39 1 5.9005 1.2271 -0.5141 40 1 7.1694 2.4753 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098070121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:33:25 Heat of formation + Delta-G solvation = -74.290057 kcal Electronic energy + Delta-G solvation = -25820.984678 eV Core-core repulsion = 21920.510599 eV Total energy + Delta-G solvation = -3900.474078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49990 -40.53803 -37.89007 -37.48239 -36.51086 -34.70666 -33.06087 -32.09270 -30.18347 -30.15546 -28.58834 -25.86301 -25.39205 -23.90230 -23.33490 -22.06608 -21.39601 -19.78150 -19.21388 -17.85262 -17.71622 -17.02967 -16.81489 -16.37070 -16.00301 -15.82487 -15.33992 -14.66393 -14.47805 -14.38271 -13.92962 -13.68741 -13.53640 -13.28315 -13.16091 -13.08594 -13.00897 -12.56699 -12.40409 -12.21328 -12.01872 -11.94278 -11.45686 -11.17690 -11.09309 -10.87825 -10.81136 -10.58696 -10.35590 -10.29384 -9.95905 -9.89715 -9.47931 -9.35907 -8.72536 -8.54690 -7.98420 -6.18576 -4.24135 -0.11384 0.94247 1.37654 1.61966 1.89605 2.31078 2.64488 2.67963 3.22175 3.30528 3.33305 3.55355 4.03284 4.31541 4.37665 4.56240 4.60793 4.64977 4.69747 4.93232 4.94321 5.18371 5.20449 5.33111 5.43568 5.44923 5.55635 5.61969 5.69249 5.82093 5.98829 6.01706 6.25134 6.32208 6.36898 6.47508 6.62364 7.32876 7.44873 7.53553 7.65768 7.75853 7.91863 8.11084 8.81157 9.41716 10.92652 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.002487 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.562225 B =11255.355262 C =11764.193392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.357 6.357 4 C 0.549 3.451 5 O -0.496 6.496 6 C -0.293 4.293 7 S 0.251 5.749 8 C 0.108 3.892 9 N -0.530 5.530 10 C 0.419 3.581 11 N -0.523 5.523 12 C 0.091 3.909 13 C 0.012 3.988 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.560 3.440 23 O -0.496 6.496 24 C -0.257 4.257 25 C 0.073 3.927 26 C -0.122 4.122 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.023 0.977 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.667 -9.407 9.194 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.394 3.606 5 O -0.386 6.386 6 C -0.411 4.411 7 S 0.517 5.483 8 C -0.128 4.128 9 N -0.255 5.255 10 C 0.130 3.870 11 N -0.240 5.240 12 C -0.029 4.029 13 C -0.026 4.026 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.351 3.649 23 O -0.369 6.369 24 C -0.273 4.273 25 C 0.060 3.940 26 C -0.180 4.180 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.230 0.770 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.119 -9.586 9.005 24.036 hybrid contribution 2.998 -0.236 -0.250 3.017 sum -17.121 -9.822 8.755 21.593 Atomic orbital electron populations 1.21818 0.92454 1.03040 1.03689 1.23052 0.95365 0.79651 1.02848 1.86572 1.23357 1.32764 1.84725 1.19386 0.80602 0.87690 0.72934 1.90842 1.59801 1.41392 1.46573 1.22112 0.96547 0.95352 1.27047 1.84049 1.01408 0.91192 1.71609 1.24387 0.97774 0.93995 0.96602 1.67750 1.22648 1.08586 1.26516 1.25040 0.79441 0.99331 0.83226 1.47032 1.10810 1.07981 1.58162 1.22676 0.80155 0.96052 1.03986 1.19455 0.97112 0.98121 0.87866 1.20981 1.04591 1.38122 0.92849 0.92025 1.25008 0.97953 0.95745 0.95473 1.69970 1.38925 1.46367 0.97448 0.86431 0.83408 0.79280 0.78271 1.19550 1.20859 1.20864 1.17742 0.88516 0.81285 0.77341 1.90894 1.34724 1.63347 1.47951 1.20433 0.93479 0.93804 1.19609 1.18467 0.93222 0.93503 0.88843 1.21073 0.96749 0.96416 1.03722 0.91378 0.91340 0.90116 0.90991 0.91029 0.76975 0.88745 0.89173 0.95876 0.95534 0.92694 0.90075 0.88803 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.36 -4.07 10.04 -41.04 -0.41 -4.49 16 4 C 0.55 7.49 7.91 34.03 0.27 7.75 16 5 O -0.50 -7.51 13.72 -19.37 -0.27 -7.77 16 6 C -0.29 -4.16 6.32 -37.68 -0.24 -4.39 16 7 S 0.25 3.12 23.06 -107.50 -2.48 0.64 16 8 C 0.11 1.62 7.73 -15.66 -0.12 1.50 16 9 N -0.53 -7.53 10.36 -12.54 -0.13 -7.66 16 10 C 0.42 5.56 11.44 -90.39 -1.03 4.53 16 11 N -0.52 -8.62 2.59 -118.78 -0.31 -8.93 16 12 C 0.09 1.62 5.30 -4.04 -0.02 1.60 16 13 C 0.01 0.29 5.30 -27.88 -0.15 0.14 16 14 C -0.53 -13.71 9.11 -34.44 -0.31 -14.02 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.56 10.43 7.68 -12.33 -0.09 10.34 16 23 O -0.50 -10.61 14.74 5.08 0.07 -10.53 16 24 C -0.26 -4.30 6.04 -104.98 -0.63 -4.93 16 25 C 0.07 1.16 5.85 -105.61 -0.62 0.54 16 26 C -0.12 -1.88 9.01 36.00 0.32 -1.55 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.21 1.89 8.00 -52.48 -0.42 1.47 16 33 H 0.09 1.79 7.45 -51.93 -0.39 1.41 16 34 H 0.09 1.30 8.00 -51.93 -0.42 0.88 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.42 5.75 -51.93 -0.30 1.13 16 40 H 0.09 1.48 6.50 -51.93 -0.34 1.15 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.47 359.14 -9.28 -41.76 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.78 Total: -2.47 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.11 Total: 3.35 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.30 Total: -41.50 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.60 Total: -22.79 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.48 Total: 0.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -9.28 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098070121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.535 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds