Wall clock time and date at job start Sat Apr 11 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48503 * 109.46956 * 269.99854 * 3 2 1 5 5 H 1.48496 * 109.47202 * 29.99632 * 3 2 1 6 6 H 1.48502 * 109.47314 * 149.99840 * 3 2 1 7 7 C 1.39949 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00407 * 185.08372 * 7 2 1 9 9 C 1.41070 * 119.99790 * 4.81486 * 7 2 1 10 10 C 1.40740 * 120.29028 * 324.80327 * 9 7 2 11 11 C 1.37545 * 119.80726 * 179.78586 * 10 9 7 12 12 Cl 1.73598 * 119.78814 * 180.23354 * 11 10 9 13 13 C 1.39000 * 120.42230 * 0.49822 * 11 10 9 14 14 C 1.38190 * 120.60581 * 359.73819 * 13 11 10 15 15 C 1.38611 * 120.16779 * 0.02562 * 14 13 11 16 16 N 1.39149 * 120.21154 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99783 * 335.14496 * 16 15 14 18 18 O 1.21285 * 120.00295 * 354.43176 * 17 16 15 19 19 C 1.50701 * 119.99917 * 174.42859 * 17 16 15 20 20 N 1.46503 * 109.47371 * 180.02562 * 19 17 16 21 21 C 1.45755 * 117.94433 * 269.73850 * 20 19 17 22 22 C 1.53106 * 110.38201 * 160.74206 * 21 20 19 23 23 C 1.53338 * 108.52864 * 51.11670 * 22 21 20 24 24 C 1.53072 * 108.42712 * 292.30654 * 23 22 21 25 25 C 1.33351 * 117.94727 * 89.99976 * 20 19 17 26 26 O 1.21285 * 118.24284 * 2.24676 * 25 20 19 27 27 H 0.97005 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.09511 * 0.03037 * 10 9 7 29 29 H 1.08000 * 119.69848 * 179.70992 * 13 11 10 30 30 H 1.07992 * 119.91776 * 179.97438 * 14 13 11 31 31 H 0.96995 * 120.00212 * 155.13937 * 16 15 14 32 32 H 1.09004 * 109.47245 * 299.99776 * 19 17 16 33 33 H 1.09004 * 109.47282 * 59.99857 * 19 17 16 34 34 H 1.08996 * 109.29994 * 281.23181 * 21 20 19 35 35 H 1.09000 * 109.29839 * 40.61265 * 21 20 19 36 36 H 1.09003 * 109.80492 * 291.32257 * 22 21 20 37 37 H 1.09001 * 109.67731 * 170.82706 * 22 21 20 38 38 H 1.09008 * 109.67627 * 172.57476 * 23 22 21 39 39 H 1.08994 * 109.70955 * 52.05890 * 23 22 21 40 40 H 1.09004 * 109.39817 * 288.77842 * 24 23 22 41 41 H 1.08996 * 109.33486 * 168.99136 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4400 2.6527 0.6999 6 1 3.5401 1.4402 0.7001 7 6 2.0083 -1.2120 0.0005 8 1 3.0851 -1.2138 0.0834 9 6 1.3067 -2.4316 -0.1015 10 6 0.0442 -2.5769 0.5033 11 6 -0.6332 -3.7690 0.3939 12 17 -2.1931 -3.9458 1.1349 13 6 -0.0743 -4.8348 -0.3016 14 6 1.1664 -4.7127 -0.8979 15 6 1.8685 -3.5211 -0.8073 16 7 3.1176 -3.3969 -1.4078 17 6 3.8691 -4.4929 -1.6325 18 8 3.5034 -5.5737 -1.2215 19 6 5.1640 -4.3753 -2.3945 20 7 5.7876 -5.6964 -2.5046 21 6 6.7135 -6.1042 -1.4554 22 6 6.8894 -7.6252 -1.4611 23 6 7.2304 -8.0709 -2.8881 24 6 6.0039 -7.8381 -3.7738 25 6 5.4765 -6.4482 -3.5612 26 8 4.7280 -5.9844 -4.3952 27 1 -0.4851 0.8401 -0.0004 28 1 -0.3932 -1.7536 1.0484 29 1 -0.6143 -5.7671 -0.3763 30 1 1.5903 -5.5481 -1.4352 31 1 3.4473 -2.5217 -1.6649 32 1 4.9643 -3.9840 -3.3921 33 1 5.8361 -3.6987 -1.8666 34 1 7.6787 -5.6258 -1.6208 35 1 6.3212 -5.7922 -0.4875 36 1 5.9652 -8.1050 -1.1390 37 1 7.7000 -7.9034 -0.7875 38 1 7.4886 -9.1300 -2.8899 39 1 8.0707 -7.4878 -3.2644 40 1 5.2300 -8.5620 -3.5182 41 1 6.2850 -7.9628 -4.8195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570178310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:33:09 Heat of formation + Delta-G solvation = -60.684657 kcal Electronic energy + Delta-G solvation = -26533.886397 eV Core-core repulsion = 22631.958586 eV Total energy + Delta-G solvation = -3901.927810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73953 -39.35329 -37.35710 -36.49052 -35.45484 -34.12981 -33.77004 -33.58106 -29.88521 -29.78544 -29.05821 -27.23609 -25.37458 -24.50728 -22.69329 -21.79842 -20.93111 -19.59756 -18.70576 -17.63974 -17.12295 -16.78581 -16.56524 -16.05934 -15.54387 -15.21806 -14.68745 -14.58404 -14.35109 -14.15985 -13.75958 -13.47013 -13.40548 -13.11288 -12.90338 -12.55568 -12.38229 -12.02649 -11.77580 -11.58080 -11.50733 -11.44789 -11.24373 -11.18347 -11.17373 -10.90935 -10.54207 -10.46677 -10.22857 -9.74534 -9.69423 -9.45859 -9.38583 -9.04162 -8.54184 -7.50274 -6.97619 -6.70449 -4.58358 2.34889 2.60396 2.73053 2.88552 2.99289 3.01981 3.06639 3.28372 3.34067 3.82737 3.91318 4.42028 4.50751 4.52548 4.54675 4.61346 5.09305 5.13867 5.18662 5.29290 5.33932 5.38636 5.49356 5.50158 5.61864 5.65156 5.71888 5.98381 6.20399 6.28139 6.36982 6.71977 6.81322 6.99661 7.04976 7.34284 7.40292 7.48620 7.71151 7.82550 7.90490 8.14881 8.24991 8.36737 8.63665 8.71169 8.85943 10.11995 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.003496 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.487839 B = 8007.456521 C = 9754.909295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.079 0.921 9 C 0.101 3.899 10 C -0.131 4.131 11 C -0.022 4.022 12 Cl -0.124 7.124 13 C -0.204 4.204 14 C -0.093 4.093 15 C 0.037 3.963 16 N -0.636 5.636 17 C 0.484 3.516 18 O -0.530 6.530 19 C 0.088 3.912 20 N -0.583 5.583 21 C 0.116 3.884 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.521 3.479 26 O -0.552 6.552 27 H 0.282 0.718 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.407 0.593 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.153 -7.551 -2.881 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.097 0.903 9 C 0.096 3.904 10 C -0.152 4.152 11 C -0.049 4.049 12 Cl -0.096 7.096 13 C -0.224 4.224 14 C -0.113 4.113 15 C -0.057 4.057 16 N -0.278 5.278 17 C 0.270 3.730 18 O -0.407 6.407 19 C -0.039 4.039 20 N -0.315 5.315 21 C -0.007 4.007 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.171 4.171 25 C 0.310 3.690 26 O -0.431 6.431 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.243 0.757 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.227 -7.956 -2.996 15.724 hybrid contribution 0.214 1.250 0.056 1.269 sum 13.441 -6.706 -2.941 15.307 Atomic orbital electron populations 1.69737 1.07317 1.29255 1.36356 1.25878 0.94944 1.01216 0.92304 0.86185 0.80141 0.80434 0.79211 1.19392 1.20163 1.18662 1.19249 0.94670 0.89747 1.46281 0.90331 1.17263 0.92373 0.91530 0.89195 1.21359 0.96288 0.95093 1.02425 1.20831 0.86076 0.96759 1.01216 1.98253 1.30674 1.98039 1.82605 1.20235 0.97386 0.97676 1.07143 1.20709 0.93326 0.97100 1.00197 1.17933 0.87209 0.97487 1.03069 1.42917 1.16858 1.09681 1.58390 1.20982 0.86164 0.84856 0.81008 1.90615 1.71927 1.27417 1.50787 1.21353 0.93375 0.86016 1.03176 1.46839 1.44432 1.16904 1.23359 1.21450 0.92325 0.95758 0.91149 1.21899 1.03313 0.94759 0.97396 1.21663 0.97276 1.02279 0.94810 1.21631 0.99279 0.93905 1.02324 1.20119 0.80611 0.87662 0.80582 1.90729 1.36826 1.72136 1.43362 0.90679 0.83911 0.87961 0.85727 0.75744 0.86584 0.87665 0.91601 0.90363 0.90386 0.89840 0.90615 0.91190 0.88148 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.61 10.62 55.55 0.59 -19.02 16 2 C 0.07 1.71 5.42 -17.33 -0.09 1.61 16 3 Si 0.92 17.34 29.56 -169.99 -5.03 12.31 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.47 -11.15 8.16 -37.87 -0.31 -11.45 16 8 H 0.08 1.73 7.47 -52.48 -0.39 1.34 16 9 C 0.10 2.50 5.56 -106.66 -0.59 1.91 16 10 C -0.13 -3.31 8.43 -38.89 -0.33 -3.64 16 11 C -0.02 -0.53 6.31 -39.55 -0.25 -0.78 16 12 Cl -0.12 -2.60 28.94 -51.86 -1.50 -4.10 16 13 C -0.20 -4.75 9.82 -39.32 -0.39 -5.13 16 14 C -0.09 -2.21 8.70 -39.46 -0.34 -2.55 16 15 C 0.04 0.88 6.46 -83.18 -0.54 0.34 16 16 N -0.64 -12.37 5.12 -9.48 -0.05 -12.42 16 17 C 0.48 8.82 7.68 -10.99 -0.08 8.74 16 18 O -0.53 -11.32 13.58 5.55 0.08 -11.24 16 19 C 0.09 1.18 5.70 -5.19 -0.03 1.15 16 20 N -0.58 -7.48 2.30 -176.22 -0.41 -7.89 16 21 C 0.12 1.09 6.33 -4.39 -0.03 1.06 16 22 C -0.14 -1.06 6.03 -26.50 -0.16 -1.22 16 23 C -0.12 -0.86 6.03 -26.52 -0.16 -1.02 16 24 C -0.13 -1.31 6.03 -28.10 -0.17 -1.48 16 25 C 0.52 7.46 7.44 -11.87 -0.09 7.37 16 26 O -0.55 -10.23 16.18 5.55 0.09 -10.14 16 27 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 28 H 0.14 3.76 6.16 -52.49 -0.32 3.44 16 29 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.13 3.00 5.77 -52.49 -0.30 2.69 16 31 H 0.41 6.97 7.71 -40.82 -0.31 6.65 16 32 H 0.12 1.60 7.13 -51.93 -0.37 1.23 16 33 H 0.11 1.04 8.01 -51.93 -0.42 0.62 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -31.10 355.40 -9.48 -40.58 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.05 Total: 11.64 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.56 Total: -5.09 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.14 Total: -39.33 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.17 Total: -21.38 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -1.50 Total: -4.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.10 -9.48 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570178310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.100 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds