Wall clock time and date at job start Sat Apr 11 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99537 * 2 1 4 4 C 1.50701 * 109.47133 * 269.99674 * 3 2 1 5 5 H 1.08000 * 120.00150 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00203 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99844 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99837 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47385 * 89.99593 * 8 6 4 10 10 H 1.48503 * 109.47060 * 209.99689 * 8 6 4 11 11 H 1.48498 * 109.47319 * 329.99313 * 8 6 4 12 12 C 1.34774 * 119.99991 * 179.97438 * 2 1 3 13 13 O 1.21586 * 119.99355 * 179.97438 * 12 2 1 14 14 N 1.34769 * 120.00223 * 0.02562 * 12 2 1 15 15 C 1.39847 * 120.00010 * 184.56168 * 14 12 2 16 16 C 1.38995 * 119.94468 * 144.87590 * 15 14 12 17 17 C 1.37856 * 120.07639 * 180.02562 * 16 15 14 18 18 C 1.39364 * 119.96698 * 359.97438 * 17 16 15 19 19 C 1.48402 * 120.06097 * 179.72319 * 18 17 16 20 20 N 1.34076 * 126.66965 * 359.68888 * 19 18 17 21 21 N 1.28993 * 107.25837 * 179.89206 * 20 19 18 22 22 N 1.28727 * 108.95117 * 0.37477 * 21 20 19 23 23 H 0.96999 * 125.33166 * 179.77727 * 22 21 20 24 24 N 1.28863 * 109.32621 * 359.76453 * 22 21 20 25 25 C 1.39464 * 119.88851 * 0.02562 * 18 17 16 26 26 Cl 1.73602 * 120.03621 * 179.97438 * 25 18 17 27 27 C 1.38026 * 119.92402 * 0.02562 * 25 18 17 28 28 H 1.09003 * 109.46619 * 270.00127 * 1 2 3 29 29 H 1.08995 * 109.47080 * 30.00118 * 1 2 3 30 30 H 1.09007 * 109.46765 * 150.00401 * 1 2 3 31 31 H 1.09002 * 109.47864 * 29.99769 * 3 2 1 32 32 H 1.09000 * 109.47255 * 149.99789 * 3 2 1 33 33 H 0.96999 * 119.99745 * 180.02562 * 7 6 4 34 34 H 0.96997 * 119.99977 * 4.56736 * 14 12 2 35 35 H 1.08002 * 119.96122 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.01840 * 180.02562 * 17 16 15 37 37 H 1.07999 * 119.97945 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1259 2.8781 -1.6728 7 7 3.3446 3.2579 -2.9128 8 14 3.7327 3.9294 -0.2530 9 1 5.1062 3.5084 0.1230 10 1 3.7474 5.3562 -0.6646 11 1 2.8267 3.7595 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1670 0.0001 14 7 1.4651 -2.3343 0.0005 15 6 2.1611 -3.5435 0.0974 16 6 1.6066 -4.6090 0.7968 17 6 2.2905 -5.8020 0.8944 18 6 3.5390 -5.9401 0.2908 19 6 4.2797 -7.2214 0.3998 20 7 3.8795 -8.3251 1.0474 21 7 4.8046 -9.2119 0.9001 22 7 5.7598 -8.7073 0.2000 23 1 6.5758 -9.1681 -0.0503 24 7 5.4618 -7.4942 -0.1164 25 6 4.0940 -4.8701 -0.4106 26 17 5.6492 -5.0377 -1.1635 27 6 3.4058 -3.6773 -0.5046 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1385 0.5139 33 1 3.8214 4.0838 -3.0900 34 1 0.4975 -2.3357 -0.0667 35 1 0.6392 -4.5019 1.2650 36 1 1.8586 -6.6295 1.4377 37 1 3.8349 -2.8480 -1.0472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:34:58 Heat of formation + Delta-G solvation = 139.643439 kcal Electronic energy + Delta-G solvation = -25454.886603 eV Core-core repulsion = 21490.398079 eV Total energy + Delta-G solvation = -3964.488524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.084 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.56601 -40.53328 -38.83703 -36.46708 -35.41076 -34.84479 -34.28432 -33.24516 -32.47418 -30.91390 -29.75795 -28.29923 -26.14129 -24.90442 -24.47984 -22.92918 -22.52249 -21.51370 -19.74491 -19.28192 -18.15905 -17.27140 -17.21949 -17.02074 -16.69365 -15.57083 -15.21838 -14.85280 -14.52412 -14.20525 -13.90905 -13.82805 -13.64358 -13.35536 -12.98831 -12.84413 -12.46727 -12.28488 -12.15102 -11.78652 -11.63819 -11.54688 -11.48213 -11.41062 -11.19087 -11.00605 -10.57073 -10.52812 -10.22834 -9.95360 -9.65830 -9.45853 -8.83735 -8.62292 -8.18969 -7.76873 -6.12100 -4.11580 0.52233 1.01855 1.16595 2.07563 2.14606 2.18385 2.91122 3.27525 3.33205 3.35793 3.41626 3.53645 3.78083 4.02324 4.23300 4.36574 4.77942 4.97239 5.08854 5.13382 5.20536 5.27123 5.35244 5.37704 5.67918 5.72034 5.92776 6.00215 6.09421 6.16578 6.22299 6.34594 6.47990 6.79452 6.88674 7.11686 7.32828 7.55888 8.00365 8.28191 8.42366 8.89632 8.97741 9.47471 11.01175 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.002737 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.585784 B =10228.481719 C =11175.962225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.230 3.770 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.699 3.301 13 O -0.562 6.562 14 N -0.692 5.692 15 C 0.216 3.784 16 C -0.155 4.155 17 C -0.044 4.044 18 C -0.046 4.046 19 C 0.223 3.777 20 N -0.270 5.270 21 N -0.056 5.056 22 N -0.232 5.232 23 H 0.474 0.526 24 N -0.275 5.275 25 C 0.019 3.981 26 Cl -0.038 7.038 27 C -0.119 4.119 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.407 0.593 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -21.359 7.538 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.339 5.339 3 C 0.109 3.891 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.400 3.600 13 O -0.438 6.438 14 N -0.341 5.341 15 C 0.117 3.883 16 C -0.176 4.176 17 C -0.065 4.065 18 C -0.052 4.052 19 C -0.056 4.056 20 N -0.144 5.144 21 N -0.051 5.051 22 N -0.078 5.078 23 H 0.328 0.672 24 N -0.126 5.126 25 C -0.011 4.011 26 Cl -0.009 7.009 27 C -0.140 4.140 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.245 0.755 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.838 -21.678 7.567 23.034 hybrid contribution 0.433 0.835 0.107 0.947 sum -1.406 -20.842 7.674 22.255 Atomic orbital electron populations 1.21659 0.80951 1.02968 1.00639 1.47151 1.05961 1.05644 1.75131 1.19659 0.92323 0.78612 0.98502 1.21322 1.37262 1.07220 0.91226 0.90725 1.24846 0.95180 0.97329 0.95584 1.69894 1.41294 1.23554 1.18672 0.86858 0.80220 0.79786 0.82845 1.19826 1.21065 1.19045 1.15877 0.85541 0.80051 0.78486 1.90916 1.11214 1.85361 1.56313 1.42979 1.10374 1.03464 1.77320 1.17542 0.92184 0.85253 0.93358 1.20873 1.02351 0.92912 1.01512 1.20815 0.91688 0.97511 0.96474 1.16983 0.95351 0.87630 1.05208 1.23497 0.89946 0.95581 0.96593 1.76047 1.20051 0.98580 1.19674 1.78848 0.94319 1.21962 1.09956 1.47865 1.18461 1.07883 1.33565 0.67248 1.75447 1.16430 0.98363 1.22393 1.20722 0.89015 0.93899 0.97464 1.98395 1.25253 1.97362 1.79890 1.21324 0.95023 0.96850 1.00832 0.93312 0.89879 0.92758 0.94868 0.94252 0.92499 0.75469 0.84339 0.83638 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.85 0.61 1.72 16 2 N -0.60 -11.63 2.86 -188.74 -0.54 -12.17 16 3 C 0.23 5.37 4.23 -5.20 -0.02 5.35 16 4 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 5 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 8 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 12 C 0.70 13.50 8.12 -86.93 -0.71 12.79 16 13 O -0.56 -13.17 13.34 5.29 0.07 -13.10 16 14 N -0.69 -9.76 5.21 -14.21 -0.07 -9.83 16 15 C 0.22 2.95 6.30 -83.67 -0.53 2.43 16 16 C -0.16 -1.61 9.95 -39.44 -0.39 -2.00 16 17 C -0.04 -0.47 9.69 -39.30 -0.38 -0.85 16 18 C -0.05 -0.59 5.88 -104.84 -0.62 -1.21 16 19 C 0.22 2.81 7.86 -156.29 -1.23 1.58 16 20 N -0.27 -3.30 12.23 32.15 0.39 -2.91 16 21 N -0.06 -0.58 13.47 60.35 0.81 0.23 16 22 N -0.23 -1.92 7.90 60.35 0.48 -1.45 16 23 H 0.47 1.64 8.96 -340.37 -3.05 -1.41 16 24 N -0.27 -3.15 9.75 32.17 0.31 -2.83 16 25 C 0.02 0.27 6.34 -39.20 -0.25 0.02 16 26 Cl -0.04 -0.54 26.19 -51.86 -1.36 -1.90 16 27 C -0.12 -1.88 8.46 -39.41 -0.33 -2.21 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 31 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 32 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.41 4.23 6.52 -40.82 -0.27 3.97 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.15 1.26 7.88 -52.49 -0.41 0.84 16 37 H 0.17 3.10 6.21 -52.49 -0.33 2.77 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -35.71 336.09 -8.98 -44.69 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.96 Total: -0.29 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -4.28 Total: 4.48 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 2.16 Total: -55.35 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.36 Total: -1.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.71 -8.98 -44.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.337 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds