Wall clock time and date at job start Sat Apr 11 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99537 * 2 1 4 4 C 1.50701 * 109.47133 * 269.99674 * 3 2 1 5 5 H 1.08000 * 120.00150 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00203 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99844 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99837 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47385 * 89.99593 * 8 6 4 10 10 H 1.48503 * 109.47060 * 209.99689 * 8 6 4 11 11 H 1.48498 * 109.47319 * 329.99313 * 8 6 4 12 12 C 1.34774 * 119.99991 * 179.97438 * 2 1 3 13 13 O 1.21586 * 119.99355 * 179.97438 * 12 2 1 14 14 N 1.34769 * 120.00223 * 0.02562 * 12 2 1 15 15 C 1.39847 * 120.00010 * 184.56168 * 14 12 2 16 16 C 1.38995 * 119.94468 * 144.87590 * 15 14 12 17 17 C 1.37856 * 120.07639 * 180.02562 * 16 15 14 18 18 C 1.39364 * 119.96698 * 359.97438 * 17 16 15 19 19 C 1.48402 * 120.06097 * 179.72319 * 18 17 16 20 20 N 1.34076 * 126.66965 * 359.68888 * 19 18 17 21 21 N 1.28993 * 107.25837 * 179.89206 * 20 19 18 22 22 N 1.28727 * 108.95117 * 0.37477 * 21 20 19 23 23 H 0.96999 * 125.33166 * 179.77727 * 22 21 20 24 24 N 1.28863 * 109.32621 * 359.76453 * 22 21 20 25 25 C 1.39464 * 119.88851 * 0.02562 * 18 17 16 26 26 Cl 1.73602 * 120.03621 * 179.97438 * 25 18 17 27 27 C 1.38026 * 119.92402 * 0.02562 * 25 18 17 28 28 H 1.09003 * 109.46619 * 270.00127 * 1 2 3 29 29 H 1.08995 * 109.47080 * 30.00118 * 1 2 3 30 30 H 1.09007 * 109.46765 * 150.00401 * 1 2 3 31 31 H 1.09002 * 109.47864 * 29.99769 * 3 2 1 32 32 H 1.09000 * 109.47255 * 149.99789 * 3 2 1 33 33 H 0.96999 * 119.99745 * 180.02562 * 7 6 4 34 34 H 0.96997 * 119.99977 * 4.56736 * 14 12 2 35 35 H 1.08002 * 119.96122 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.01840 * 180.02562 * 17 16 15 37 37 H 1.07999 * 119.97945 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1259 2.8781 -1.6728 7 7 3.3446 3.2579 -2.9128 8 14 3.7327 3.9294 -0.2530 9 1 5.1062 3.5084 0.1230 10 1 3.7474 5.3562 -0.6646 11 1 2.8267 3.7595 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1670 0.0001 14 7 1.4651 -2.3343 0.0005 15 6 2.1611 -3.5435 0.0974 16 6 1.6066 -4.6090 0.7968 17 6 2.2905 -5.8020 0.8944 18 6 3.5390 -5.9401 0.2908 19 6 4.2797 -7.2214 0.3998 20 7 3.8795 -8.3251 1.0474 21 7 4.8046 -9.2119 0.9001 22 7 5.7598 -8.7073 0.2000 23 1 6.5758 -9.1681 -0.0503 24 7 5.4618 -7.4942 -0.1164 25 6 4.0940 -4.8701 -0.4106 26 17 5.6492 -5.0377 -1.1635 27 6 3.4058 -3.6773 -0.5046 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6084 2.0285 0.5138 32 1 3.1499 1.1385 0.5139 33 1 3.8214 4.0838 -3.0900 34 1 0.4975 -2.3357 -0.0667 35 1 0.6392 -4.5019 1.2650 36 1 1.8586 -6.6295 1.4377 37 1 3.8349 -2.8480 -1.0472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821597708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:34:58 Heat of formation + Delta-G solvation = 113.434810 kcal Electronic energy + Delta-G solvation = -25456.023095 eV Core-core repulsion = 21490.398079 eV Total energy + Delta-G solvation = -3965.625016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.084 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.41229 -41.80024 -40.01579 -37.57726 -36.81244 -36.14407 -35.21218 -34.68819 -34.04995 -31.91678 -31.05535 -29.86687 -27.44690 -25.77866 -25.67414 -24.29177 -23.74704 -22.61768 -21.06812 -20.17302 -19.40268 -19.12590 -18.47107 -18.10791 -17.70186 -16.85037 -16.74951 -16.28868 -15.77753 -15.39941 -15.17112 -15.08885 -14.73894 -14.63407 -14.42650 -14.01635 -13.88214 -13.65814 -13.26682 -13.14840 -12.85629 -12.78431 -12.59704 -12.43200 -12.40727 -12.35022 -12.14575 -12.00795 -11.72742 -11.56560 -11.16684 -10.95907 -10.80361 -9.87766 -9.53948 -9.04915 -8.31510 -6.36468 -0.45615 0.15166 0.20902 1.05254 1.20619 1.35266 1.40280 1.45603 1.47659 1.65590 2.11530 2.33439 2.64289 2.65593 2.98228 3.04627 3.12352 3.83582 4.07049 4.13427 4.21322 4.28904 4.33427 4.46705 4.64146 4.69648 4.79859 4.90634 4.97270 5.00673 5.13999 5.22262 5.30696 5.47334 5.55578 5.63608 5.79011 5.95521 6.27725 6.65319 6.96391 7.14774 7.25113 7.54760 8.85494 Molecular weight = 336.08amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.002737 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.585784 B =10228.481719 C =11175.962225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.239 3.761 4 C -0.535 4.535 5 H 0.028 0.972 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.233 1.233 12 C 0.693 3.307 13 O -0.614 6.614 14 N -0.670 5.670 15 C 0.196 3.804 16 C -0.125 4.125 17 C -0.034 4.034 18 C -0.046 4.046 19 C 0.209 3.791 20 N -0.281 5.281 21 N -0.055 5.055 22 N -0.206 5.206 23 H 0.492 0.508 24 N -0.287 5.287 25 C 0.006 3.994 26 Cl -0.049 7.049 27 C -0.142 4.142 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.427 0.573 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -22.967 10.346 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.348 5.348 3 C 0.116 3.884 4 C -0.573 4.573 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.203 1.203 11 H -0.156 1.156 12 C 0.394 3.606 13 O -0.494 6.494 14 N -0.321 5.321 15 C 0.098 3.902 16 C -0.146 4.146 17 C -0.055 4.055 18 C -0.051 4.051 19 C -0.070 4.070 20 N -0.154 5.154 21 N -0.050 5.050 22 N -0.056 5.056 23 H 0.351 0.649 24 N -0.139 5.139 25 C -0.024 4.024 26 Cl -0.020 7.020 27 C -0.163 4.163 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.269 0.731 35 H 0.202 0.798 36 H 0.193 0.807 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.909 -23.354 10.384 25.856 hybrid contribution 1.076 1.126 -0.848 1.774 sum -2.832 -22.228 9.536 24.353 Atomic orbital electron populations 1.21999 0.77339 1.04112 1.03327 1.47110 1.08180 1.04344 1.75169 1.19306 0.92693 0.81146 0.95237 1.21583 1.36660 1.06555 0.92532 0.95358 1.25847 0.95363 0.99035 0.98538 1.70056 1.42812 1.24491 1.21369 0.85729 0.79597 0.77649 0.80035 1.20480 1.20283 1.15551 1.16109 0.85097 0.81250 0.78105 1.90890 1.13732 1.86337 1.58402 1.42573 1.11082 1.02019 1.76475 1.17744 0.91885 0.85914 0.94628 1.21240 1.03337 0.90942 0.99035 1.21199 0.90518 0.98321 0.95412 1.17181 0.96144 0.87220 1.04595 1.23493 0.90379 0.95758 0.97365 1.76021 1.20731 0.98524 1.20113 1.78791 0.94468 1.21626 1.10082 1.47898 1.18679 1.06990 1.32052 0.64935 1.75413 1.16415 0.99481 1.22614 1.20723 0.88886 0.94200 0.98579 1.98378 1.25995 1.97393 1.80224 1.21060 0.96656 0.96338 1.02273 0.89649 0.90912 0.89632 0.92401 0.96084 0.92359 0.73087 0.79842 0.80746 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.81 10.24 127.77 1.31 3.12 16 2 N -0.61 -23.24 2.86 -869.31 -2.48 -25.72 16 3 C 0.24 11.14 4.23 85.63 0.36 11.50 16 4 C -0.53 -30.76 9.94 25.60 0.25 -30.51 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.58 5.47 84.66 0.46 1.05 16 7 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 8 Si 0.95 43.73 27.47 68.60 1.88 45.61 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.23 -9.42 6.54 99.48 0.65 -8.77 16 12 C 0.69 26.90 8.12 179.06 1.45 28.35 16 13 O -0.61 -30.12 13.34 -3.99 -0.05 -30.17 16 14 N -0.67 -17.91 5.21 -317.14 -1.65 -19.56 16 15 C 0.20 5.14 6.30 38.21 0.24 5.38 16 16 C -0.13 -2.12 9.95 22.36 0.22 -1.90 16 17 C -0.03 -0.61 9.69 22.45 0.22 -0.39 16 18 C -0.05 -1.12 5.88 -20.00 -0.12 -1.24 16 19 C 0.21 4.96 7.86 137.35 1.08 6.04 16 20 N -0.28 -6.26 12.23 -52.20 -0.64 -6.90 16 21 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 22 N -0.21 -3.07 7.90 37.02 0.29 -2.78 16 23 H 0.49 2.51 8.96 -347.54 -3.12 -0.61 16 24 N -0.29 -6.27 9.75 -52.15 -0.51 -6.78 16 25 C 0.01 0.17 6.34 22.52 0.14 0.31 16 26 Cl -0.05 -1.46 26.19 -2.72 -0.07 -1.53 16 27 C -0.14 -4.64 8.46 22.38 0.19 -4.45 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.09 1.51 6.30 -2.38 -0.02 1.49 16 31 H 0.06 2.42 7.13 -2.39 -0.02 2.41 16 32 H 0.02 1.06 6.85 -2.39 -0.02 1.05 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.43 7.51 6.52 -92.71 -0.60 6.91 16 35 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.18 2.20 7.88 -2.91 -0.02 2.17 16 37 H 0.12 5.09 6.21 -2.91 -0.02 5.07 16 Total: -1.00 -83.95 336.09 0.78 -83.17 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.60 Total: 7.26 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.82 Total: 17.27 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -4.19 Total: -121.61 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -83.95 0.78 -83.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.603 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds