Wall clock time and date at job start Sat Apr 11 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39908 * 109.47119 * 2 1 4 4 F 1.39897 * 109.47147 * 239.99942 * 2 1 3 5 5 C 1.50698 * 109.47252 * 119.99532 * 2 1 3 6 6 O 1.21276 * 120.00000 * 335.00477 * 5 2 1 7 7 N 1.34777 * 120.00158 * 154.99824 * 5 2 1 8 8 C 1.46498 * 120.00300 * 174.79358 * 7 5 2 9 9 C 1.53004 * 112.84868 * 293.92130 * 8 7 5 10 10 N 1.46509 * 109.47003 * 311.65624 * 9 8 7 11 11 C 1.34780 * 119.99794 * 174.96824 * 10 9 8 12 12 O 1.21281 * 119.99746 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99823 * 179.97438 * 11 10 9 14 14 S 1.81006 * 109.46977 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99822 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99593 * 0.02562 * 15 14 13 17 17 C 1.38798 * 119.99826 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99858 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99684 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47478 * 60.00347 * 19 17 15 21 21 H 1.48506 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47413 * 299.99920 * 19 17 15 23 23 C 1.53776 * 113.61707 * 162.61948 * 8 7 5 24 24 C 1.53781 * 87.07670 * 270.88219 * 23 8 7 25 25 C 1.53777 * 87.08428 * 334.56586 * 24 23 8 26 26 H 1.09000 * 109.47254 * 299.99912 * 1 2 3 27 27 H 1.08996 * 109.47411 * 60.00396 * 1 2 3 28 28 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99900 * 355.07277 * 7 5 2 30 30 H 1.09003 * 109.47231 * 71.65031 * 9 8 7 31 31 H 1.09000 * 109.47224 * 191.65576 * 9 8 7 32 32 H 0.96993 * 119.99974 * 354.97350 * 10 9 8 33 33 H 1.08996 * 109.47461 * 300.00489 * 13 11 10 34 34 H 1.08999 * 109.46852 * 60.00667 * 13 11 10 35 35 H 0.96999 * 119.99820 * 179.97438 * 18 17 15 36 36 H 1.08997 * 113.61535 * 25.42681 * 23 8 7 37 37 H 1.08998 * 113.61929 * 156.33826 * 23 8 7 38 38 H 1.09010 * 113.61216 * 220.01719 * 24 23 8 39 39 H 1.08996 * 113.61829 * 89.11743 * 24 23 8 40 40 H 1.08999 * 113.61456 * 270.88777 * 25 24 23 41 41 H 1.08996 * 113.61593 * 139.97880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3370 -0.7704 2.2223 7 7 3.2543 -1.2789 1.2287 8 6 3.7892 -1.8693 2.4581 9 6 4.0559 -0.8303 3.5491 10 7 4.8046 0.2935 2.9807 11 6 5.0658 1.3795 3.7350 12 8 4.6814 1.4262 4.8844 13 6 5.8365 2.5351 3.1506 14 16 6.0237 3.8297 4.4017 15 6 6.9325 5.0215 3.4751 16 1 7.1974 4.8191 2.4478 17 6 7.3069 6.2207 4.0652 18 7 6.9836 6.4674 5.3170 19 14 8.2697 7.4844 3.0826 20 1 7.4762 7.8998 1.8981 21 1 8.5449 8.6690 3.9348 22 1 9.5540 6.8889 2.6340 23 6 4.9661 -2.8297 2.2188 24 6 3.9211 -3.9484 2.0730 25 6 2.9952 -3.0904 2.9513 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.7812 -1.2935 0.4145 30 1 3.1073 -0.4703 3.9477 31 1 4.6373 -1.2860 4.3506 32 1 5.1123 0.2559 2.0617 33 1 6.8211 2.1918 2.8333 34 1 5.2968 2.9345 2.2920 35 1 7.2455 7.3054 5.7295 36 1 5.5173 -2.6248 1.3010 37 1 5.6155 -2.9493 3.0860 38 1 4.2188 -4.8875 2.5397 39 1 3.5591 -4.0776 1.0531 40 1 3.1058 -3.2811 4.0187 41 1 1.9553 -3.0959 2.6248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:33:46 Heat of formation + Delta-G solvation = -150.106314 kcal Electronic energy + Delta-G solvation = -27365.468789 eV Core-core repulsion = 23043.310636 eV Total energy + Delta-G solvation = -4322.158153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.57601 -47.56461 -41.15120 -39.05577 -38.46869 -34.32727 -33.68816 -32.40818 -31.92377 -29.98337 -27.51884 -26.27227 -25.56383 -25.34192 -22.86591 -21.35127 -20.34516 -19.73732 -19.03641 -18.12109 -17.92738 -17.03829 -16.53244 -16.30879 -15.87209 -15.71111 -15.32288 -15.05213 -14.78527 -14.68134 -14.34912 -13.97990 -13.91706 -13.88093 -13.74453 -13.31888 -13.01416 -12.98298 -12.79456 -12.75444 -12.59361 -12.35461 -12.19932 -11.75247 -11.41974 -11.31223 -11.02621 -11.02234 -10.85189 -10.75286 -10.24869 -9.82458 -9.64091 -9.34711 -9.04404 -8.86994 -8.21656 -6.47606 -6.19415 -3.89923 1.72111 2.11529 3.03571 3.12647 3.24969 3.26401 3.29009 3.32531 3.52725 3.68072 3.90586 4.01725 4.12713 4.21645 4.22506 4.34816 4.40735 4.87873 5.00231 5.12490 5.15520 5.17754 5.23083 5.31162 5.37733 5.46009 5.46828 5.52327 5.61507 5.62900 5.77703 5.85667 5.91701 6.08070 6.15577 6.59322 6.74649 7.41371 7.61134 7.69751 8.37066 8.63116 9.25615 10.88003 Molecular weight = 336.11amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.003001 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.177440 B = 9328.129302 C =10453.812636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.280 3.720 3 F -0.175 7.175 4 F -0.191 7.191 5 C 0.492 3.508 6 O -0.486 6.486 7 N -0.694 5.694 8 C 0.134 3.866 9 C 0.123 3.877 10 N -0.735 5.735 11 C 0.532 3.468 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.131 4.131 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.409 0.591 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.394 0.606 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -22.425 -13.682 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.241 3.759 3 F -0.156 7.156 4 F -0.173 7.173 5 C 0.273 3.727 6 O -0.358 6.358 7 N -0.347 5.347 8 C 0.048 3.952 9 C -0.002 4.002 10 N -0.390 5.390 11 C 0.318 3.682 12 O -0.389 6.389 13 C -0.303 4.303 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.172 4.172 24 C -0.178 4.178 25 C -0.170 4.170 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.227 0.773 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.517 -22.231 -10.871 26.889 hybrid contribution 1.613 0.913 -3.040 3.560 sum -8.904 -21.319 -13.911 26.968 Atomic orbital electron populations 1.22650 0.88732 1.06212 1.06521 1.21380 0.96013 0.76580 0.81959 1.93154 1.90410 1.35573 1.96453 1.93053 1.90495 1.80705 1.52999 1.20723 0.82574 0.80084 0.89346 1.90807 1.55456 1.56716 1.32861 1.45615 1.17432 1.58333 1.13279 1.21766 0.96382 0.92250 0.84795 1.21566 0.97688 0.86433 0.94511 1.45859 1.59016 1.17994 1.16113 1.20308 0.79275 0.82578 0.86056 1.90706 1.50894 1.79958 1.17378 1.23522 1.01823 0.99133 1.05852 1.85400 1.72763 1.10728 1.14317 1.22832 1.40923 1.04065 1.00622 0.91002 1.24986 0.95865 0.97513 0.95178 1.70010 1.43943 1.24788 1.11566 0.86227 0.79923 0.79838 0.79527 1.19927 1.20810 1.19950 1.23291 0.95667 0.94567 1.03630 1.22874 0.96639 0.97776 1.00510 1.23183 0.99714 0.93128 1.00949 0.87820 0.88981 0.88893 0.75481 0.90133 0.90416 0.77266 0.89291 0.89326 0.92136 0.90478 0.87825 0.90650 0.90068 0.88444 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 8.92 37.15 0.33 -1.01 16 2 C 0.28 2.63 2.48 -27.89 -0.07 2.56 16 3 F -0.17 -2.08 17.05 2.25 0.04 -2.04 16 4 F -0.19 -1.61 16.46 2.25 0.04 -1.57 16 5 C 0.49 5.14 6.79 -10.99 -0.07 5.06 16 6 O -0.49 -6.42 14.09 5.56 0.08 -6.34 16 7 N -0.69 -5.67 4.48 -46.86 -0.21 -5.88 16 8 C 0.13 1.14 0.64 -131.01 -0.08 1.05 16 9 C 0.12 1.52 4.93 -4.03 -0.02 1.50 16 10 N -0.74 -10.19 5.38 -60.28 -0.32 -10.51 16 11 C 0.53 10.31 7.85 -10.99 -0.09 10.22 16 12 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 13 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 18 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 19 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.13 -0.80 7.37 -25.92 -0.19 -0.99 16 24 C -0.14 -0.78 7.99 -25.92 -0.21 -0.99 16 25 C -0.13 -1.01 6.95 -25.92 -0.18 -1.19 16 26 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.41 2.44 8.16 -40.82 -0.33 2.11 16 30 H 0.08 1.24 7.36 -51.93 -0.38 0.86 16 31 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.39 4.37 8.11 -40.82 -0.33 4.04 16 33 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 35 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.10 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.08 0.72 7.18 -51.93 -0.37 0.34 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -36.31 368.78 -6.97 -43.28 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.57 Total: 2.45 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.16 Total: 0.10 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.20 Total: -42.14 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.40 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.31 -6.97 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.823 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds