Wall clock time and date at job start Sat Apr 11 2020 04:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00663 * 2 1 4 4 O 1.20827 * 119.99925 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00202 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46840 * 180.02562 * 5 3 2 7 7 C 1.37109 * 119.99768 * 269.99576 * 6 5 3 8 8 H 1.07997 * 119.99761 * 142.14005 * 7 6 5 9 9 C 1.38947 * 120.00002 * 322.13570 * 7 6 5 10 10 N 1.31404 * 120.00006 * 158.98339 * 9 7 6 11 11 Si 1.86803 * 119.99884 * 338.98314 * 9 7 6 12 12 H 1.48503 * 109.47425 * 95.28088 * 11 9 7 13 13 H 1.48504 * 109.47020 * 215.27814 * 11 9 7 14 14 H 1.48501 * 109.47312 * 335.28026 * 11 9 7 15 15 C 1.34773 * 120.00236 * 90.00080 * 6 5 3 16 16 O 1.21289 * 120.00292 * 3.54523 * 15 6 5 17 17 C 1.50698 * 119.99938 * 183.55142 * 15 6 5 18 18 H 1.09002 * 110.85854 * 304.27215 * 17 15 6 19 19 C 1.54626 * 110.97474 * 68.06808 * 17 15 6 20 20 C 1.51276 * 104.19771 * 93.35590 * 19 17 15 21 21 O 1.21306 * 124.94609 * 196.27899 * 20 19 17 22 22 N 1.34422 * 110.11558 * 16.25492 * 20 19 17 23 23 C 1.40763 * 124.34977 * 180.40802 * 22 20 19 24 24 C 1.40249 * 126.07950 * 180.02562 * 23 22 20 25 25 N 1.30831 * 108.33935 * 180.02562 * 24 23 22 26 26 N 1.40074 * 108.36676 * 359.97438 * 25 24 23 27 27 H 0.96996 * 126.05409 * 180.02562 * 26 25 24 28 28 C 1.35755 * 126.07950 * 0.02681 * 23 22 20 29 29 C 1.46760 * 111.29825 * 0.67333 * 22 20 19 30 30 H 1.09004 * 109.46980 * 300.00114 * 1 2 3 31 31 H 1.09003 * 109.47137 * 59.99645 * 1 2 3 32 32 H 1.08998 * 109.47568 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47331 * 60.00226 * 5 3 2 34 34 H 1.08995 * 109.46963 * 299.99622 * 5 3 2 35 35 H 0.97008 * 120.00242 * 179.97438 * 10 9 7 36 36 H 1.09005 * 110.47975 * 334.67844 * 19 17 15 37 37 H 1.09001 * 110.60276 * 212.09123 * 19 17 15 38 38 H 1.07999 * 125.83421 * 0.04773 * 24 23 22 39 39 H 1.07997 * 126.22060 * 359.97438 * 28 23 22 40 40 H 1.08999 * 110.24636 * 101.72085 * 29 22 20 41 41 H 1.09003 * 110.24603 * 223.71204 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2746 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.1758 3.3376 -1.1869 8 1 3.8832 4.3726 -1.2846 9 6 4.7489 2.6730 -2.2642 10 7 4.5699 3.1242 -3.4852 11 14 5.7738 1.1379 -1.9765 12 1 4.9218 -0.0659 -2.1502 13 1 6.8913 1.0986 -2.9537 14 1 6.3231 1.1607 -0.5970 15 6 4.1734 3.3250 1.1676 16 8 4.0647 2.7261 2.2167 17 6 4.5226 4.7910 1.1696 18 1 5.4135 4.9785 0.5703 19 6 3.3323 5.6441 0.6736 20 6 2.6028 6.0351 1.9399 21 8 1.4697 6.4658 1.9843 22 7 3.3929 5.8353 3.0089 23 6 3.0099 6.0927 4.3388 24 6 3.8031 5.8985 5.4790 25 7 3.1058 6.2472 6.5297 26 7 1.8440 6.6768 6.0994 27 1 1.1240 6.9926 6.6675 28 6 1.8071 6.5730 4.7457 29 6 4.7083 5.3204 2.6109 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.9557 0.7807 -0.8907 34 1 3.9564 0.7804 0.8891 35 1 4.9703 2.6605 -4.2373 36 1 2.6835 5.0539 0.0264 37 1 3.6882 6.5309 0.1491 38 1 4.8165 5.5253 5.4882 39 1 0.9727 6.8266 4.1087 40 1 5.4480 6.1207 2.6294 41 1 5.0122 4.5097 3.2731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487047607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:34:10 Heat of formation + Delta-G solvation = -44.401616 kcal Electronic energy + Delta-G solvation = -30170.442344 eV Core-core repulsion = 25860.804205 eV Total energy + Delta-G solvation = -4309.638138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37705 -40.33153 -39.78418 -38.46791 -36.23299 -35.75150 -34.96671 -32.81747 -32.17886 -31.23163 -29.28850 -28.21067 -27.40738 -26.59012 -25.17587 -22.93829 -22.49272 -21.14205 -20.73153 -19.26275 -19.00609 -17.99065 -17.70239 -17.27995 -16.87553 -16.12488 -15.97774 -15.65639 -15.40515 -15.25108 -14.81563 -14.55162 -14.40710 -14.00108 -13.90089 -13.43387 -13.29864 -13.04720 -12.93579 -12.74912 -12.58564 -12.47093 -11.92430 -11.84060 -11.63482 -11.45660 -11.07942 -10.99919 -10.91573 -10.62409 -10.38125 -10.19792 -10.14926 -9.98164 -9.61826 -9.48314 -9.42503 -8.88021 -8.13368 -7.53306 -6.66308 -4.30350 1.84852 2.46258 2.69343 2.79199 2.87183 2.92127 3.10605 3.12657 3.26337 3.38072 3.53696 3.90792 4.03317 4.57993 4.72626 4.78885 4.95584 5.12668 5.23616 5.33564 5.35858 5.41654 5.43125 5.57351 5.60696 5.67343 5.73536 5.76312 5.77887 5.91400 6.05431 6.19971 6.23100 6.41333 6.80381 6.98301 7.01003 7.24175 7.27335 7.64641 7.81992 8.02610 8.33414 8.42435 8.68922 9.04487 9.35320 10.43006 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.004212 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.652313 B = 6646.238245 C = 7470.095279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.447 3.553 4 O -0.486 6.486 5 C 0.107 3.893 6 N -0.444 5.444 7 C -0.353 4.353 8 H 0.116 0.884 9 C 0.070 3.930 10 N -0.846 5.846 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.499 3.501 16 O -0.583 6.583 17 C -0.098 4.098 18 H 0.130 0.870 19 C -0.138 4.138 20 C 0.520 3.480 21 O -0.532 6.532 22 N -0.532 5.532 23 C 0.023 3.977 24 C 0.043 3.957 25 N -0.284 5.284 26 N -0.477 5.477 27 H 0.442 0.558 28 C 0.033 3.967 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.278 0.722 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.082 0.918 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 1.418 8.781 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.370 6.370 5 C -0.018 4.018 6 N -0.164 5.164 7 C -0.480 4.480 8 H 0.133 0.867 9 C -0.139 4.139 10 N -0.479 5.479 11 Si 0.687 3.313 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.178 1.178 15 C 0.289 3.711 16 O -0.467 6.467 17 C -0.119 4.119 18 H 0.148 0.852 19 C -0.178 4.178 20 C 0.309 3.691 21 O -0.409 6.409 22 N -0.258 5.258 23 C -0.080 4.080 24 C -0.145 4.145 25 N -0.108 5.108 26 N -0.190 5.190 27 H 0.286 0.714 28 C -0.115 4.115 29 C -0.008 4.008 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.204 0.796 39 H 0.207 0.793 40 H 0.100 0.900 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.095 1.753 10.331 10.535 hybrid contribution -0.107 -0.837 -1.021 1.325 sum -1.202 0.916 9.309 9.431 Atomic orbital electron populations 1.23142 0.77413 1.02858 1.02324 1.86508 1.22759 1.34471 1.84926 1.24678 0.92787 0.81298 0.72474 1.90636 1.66548 1.36163 1.43696 1.21348 0.86995 0.88357 1.05064 1.43311 1.58157 1.08394 1.06572 1.19248 1.42216 0.99390 0.87102 0.86660 1.25352 0.95890 0.97997 0.94709 1.69752 1.39361 1.40594 0.98233 0.87174 0.81257 0.82884 0.79977 1.19674 1.20649 1.17823 1.20001 0.79173 0.88771 0.83177 1.90583 1.55928 1.68482 1.31664 1.21974 1.01139 0.93031 0.95797 0.85219 1.22342 0.97835 1.01826 0.95804 1.21158 0.85347 0.76480 0.86092 1.90609 1.17504 1.46233 1.86514 1.45202 1.15722 1.62248 1.02616 1.17621 0.94950 1.10696 0.84717 1.23659 1.00697 1.01857 0.88303 1.77197 0.91446 1.19487 1.22629 1.46069 1.13325 1.54217 1.05381 0.71365 1.22514 0.99758 1.04168 0.85105 1.22208 0.83151 0.99179 0.96258 0.92351 0.92101 0.88698 0.87714 0.86827 0.91124 0.85711 0.86890 0.79636 0.79334 0.90012 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.82 10.56 -39.24 -0.41 -7.23 16 3 C 0.45 9.63 8.02 36.01 0.29 9.92 16 4 O -0.49 -11.75 16.18 -18.75 -0.30 -12.05 16 5 C 0.11 2.26 4.82 -5.19 -0.03 2.24 16 6 N -0.44 -9.80 1.66 -116.10 -0.19 -10.00 16 7 C -0.35 -8.24 8.57 -14.93 -0.13 -8.36 16 8 H 0.12 2.75 5.66 -52.49 -0.30 2.45 16 9 C 0.07 1.66 5.33 -17.47 -0.09 1.57 16 10 N -0.85 -21.43 13.96 55.50 0.77 -20.66 16 11 Si 0.86 17.89 24.97 -169.99 -4.24 13.64 16 12 H -0.27 -5.44 6.69 56.52 0.38 -5.06 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.25 -5.18 7.11 56.52 0.40 -4.78 16 15 C 0.50 10.42 6.95 -10.99 -0.08 10.34 16 16 O -0.58 -13.18 15.12 5.55 0.08 -13.10 16 17 C -0.10 -1.63 2.65 -90.04 -0.24 -1.87 16 18 H 0.13 1.89 7.97 -51.93 -0.41 1.48 16 19 C -0.14 -2.38 5.31 -26.75 -0.14 -2.52 16 20 C 0.52 9.65 7.98 -10.86 -0.09 9.56 16 21 O -0.53 -11.08 15.64 5.53 0.09 -10.99 16 22 N -0.53 -8.77 3.16 -112.38 -0.36 -9.12 16 23 C 0.02 0.36 6.80 -83.89 -0.57 -0.21 16 24 C 0.04 0.60 11.53 -17.22 -0.20 0.40 16 25 N -0.28 -3.99 12.69 30.70 0.39 -3.60 16 26 N -0.48 -5.88 7.40 30.69 0.23 -5.65 16 27 H 0.44 3.75 8.96 -182.62 -1.64 2.12 16 28 C 0.03 0.48 11.18 -16.67 -0.19 0.29 16 29 C 0.11 1.64 6.27 -3.03 -0.02 1.62 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.18 3.21 -51.93 -0.17 2.01 16 34 H 0.11 2.22 7.37 -51.93 -0.38 1.84 16 35 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.12 2.57 6.49 -51.93 -0.34 2.23 16 37 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.19 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.19 2.79 6.51 -52.49 -0.34 2.45 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.46 7.04 -51.93 -0.37 1.09 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -32.79 348.46 -4.74 -37.53 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.64 Total: 11.40 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: -0.41 Total: 24.58 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.84 Total: -49.03 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.55 Total: -43.38 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.24 Total: 13.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.79 -4.74 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487047607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.874 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds