Wall clock time and date at job start Sat Apr 11 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81402 * 102.99685 * 2 1 4 4 H 1.08998 * 108.46057 * 57.29121 * 3 2 1 5 5 C 1.52527 * 108.52310 * 299.71837 * 3 2 1 6 6 C 1.50124 * 105.41707 * 149.35547 * 5 3 2 7 7 C 1.54842 * 110.81744 * 97.68019 * 6 5 3 8 8 C 1.54900 * 110.14198 * 321.13739 * 7 6 5 9 9 N 1.43430 * 116.08072 * 318.63663 * 8 7 6 10 10 S 1.65593 * 120.54030 * 271.59379 * 9 8 7 11 11 O 1.42104 * 106.40270 * 23.51296 * 10 9 8 12 12 O 1.42101 * 106.40586 * 156.43613 * 10 9 8 13 13 N 1.65598 * 107.21702 * 269.97574 * 10 9 8 14 14 C 1.46500 * 120.00169 * 89.99906 * 13 10 9 15 15 C 1.46503 * 120.00190 * 269.99550 * 13 10 9 16 16 H 1.08998 * 109.46961 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47582 * 240.00500 * 15 13 10 18 18 C 1.50701 * 109.47046 * 119.99840 * 15 13 10 19 19 H 1.08002 * 119.99752 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00057 * 180.02562 * 18 15 13 21 21 N 1.31520 * 119.99834 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00008 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47183 * 60.00132 * 22 20 18 24 24 H 1.48506 * 109.46943 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46994 * 300.00043 * 22 20 18 26 26 C 1.46246 * 108.51704 * 175.00307 * 3 2 1 27 27 H 1.09002 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46936 * 300.00044 * 1 2 3 29 29 H 1.08996 * 109.47282 * 60.00084 * 1 2 3 30 30 H 1.09003 * 110.24761 * 268.32925 * 5 3 2 31 31 H 1.08998 * 110.24760 * 30.23290 * 5 3 2 32 32 H 1.08990 * 109.20914 * 218.02862 * 6 5 3 33 33 H 1.08999 * 109.20148 * 337.38781 * 6 5 3 34 34 H 1.09003 * 109.35911 * 81.34018 * 7 6 5 35 35 H 1.09001 * 109.36099 * 201.06410 * 7 6 5 36 36 H 1.09002 * 108.16150 * 80.35935 * 8 7 6 37 37 H 1.09005 * 108.16137 * 196.92219 * 8 7 6 38 38 H 1.09006 * 109.47186 * 89.99867 * 14 13 10 39 39 H 1.08999 * 109.47346 * 209.99851 * 14 13 10 40 40 H 1.09001 * 109.46795 * 329.99868 * 14 13 10 41 41 H 1.09011 * 109.46923 * 299.99974 * 17 15 13 42 42 H 1.09000 * 109.47269 * 59.99313 * 17 15 13 43 43 H 1.09002 * 109.47409 * 180.02562 * 17 15 13 44 44 H 0.96995 * 119.99647 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.84460 * 299.15112 * 26 3 2 46 46 H 1.08995 * 109.84790 * 60.13929 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7553 2.2295 0.8699 5 6 1.6324 2.4009 -1.2560 6 6 1.3105 3.8170 -0.8755 7 6 2.4387 4.7776 -1.3248 8 6 3.8216 4.1134 -1.1107 9 7 3.9858 3.3781 0.1098 10 16 4.5118 4.1365 1.4847 11 8 4.1925 5.5126 1.3311 12 8 4.0554 3.3499 2.5766 13 7 6.1649 4.0386 1.4966 14 6 6.9657 5.0931 0.8698 15 6 6.8265 2.8975 2.1342 16 1 6.0741 2.2223 2.5415 17 6 7.7291 3.3972 3.2640 18 6 7.6584 2.1647 1.1134 19 1 7.6913 2.5142 0.0920 20 6 8.3775 1.0480 1.4834 21 7 8.3371 0.6221 2.7271 22 14 9.4093 0.1400 0.2183 23 1 10.4349 1.0597 -0.3362 24 1 10.0789 -1.0174 0.8642 25 1 8.5337 -0.3444 -0.8790 26 6 3.6726 1.9094 0.1208 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 2.3626 2.3844 -2.0652 31 1 0.7269 1.8731 -1.5552 32 1 0.3763 4.1130 -1.3525 33 1 1.1963 3.8803 0.2067 34 1 2.3117 5.0153 -2.3810 35 1 2.3864 5.6955 -0.7391 36 1 4.0050 3.4345 -1.9436 37 1 4.5819 4.8938 -1.1421 38 1 7.1881 5.8662 1.6053 39 1 7.8973 4.6683 0.4961 40 1 6.4074 5.5294 0.0415 41 1 8.4816 4.0723 2.8563 42 1 7.1273 3.9273 4.0023 43 1 8.2217 2.5483 3.7380 44 1 8.8427 -0.1637 2.9872 45 1 4.0110 1.4659 1.0571 46 1 4.1636 1.4200 -0.7202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369214708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:30 Heat of formation + Delta-G solvation = -72.294729 kcal Electronic energy + Delta-G solvation = -27563.156108 eV Core-core repulsion = 23934.045600 eV Total energy + Delta-G solvation = -3629.110508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.91315 -36.78714 -36.14120 -35.25725 -33.54361 -32.60741 -32.57961 -29.10291 -29.03098 -26.37923 -25.53554 -25.17732 -25.09405 -21.78564 -20.72737 -20.29447 -18.24207 -17.33012 -16.90350 -16.55519 -16.35804 -15.94778 -15.09777 -15.04002 -14.63497 -14.45202 -14.11710 -13.66853 -13.65125 -13.45261 -13.20152 -12.93517 -12.70842 -12.52256 -12.30125 -12.19965 -11.94726 -11.80861 -11.60400 -11.38956 -11.32374 -11.22454 -11.20012 -11.00282 -10.92054 -10.86611 -10.58283 -10.44728 -10.40412 -10.21153 -10.06189 -9.69669 -9.32367 -8.85535 -8.47895 -7.96307 -7.66211 -6.09150 -4.17962 1.09513 1.68918 2.54325 3.26279 3.32460 3.32677 3.45069 4.04901 4.35694 4.48093 4.70873 4.76333 4.87990 4.99348 5.02901 5.05968 5.12017 5.20949 5.21734 5.36054 5.54190 5.58435 5.64558 5.68090 5.79430 5.86225 5.90511 6.02475 6.05602 6.15926 6.17230 6.19206 6.30424 6.38753 6.64110 6.80003 6.86904 6.92588 7.11362 7.48246 7.61732 7.77346 8.04374 8.25467 8.84773 9.48555 10.95843 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005375 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.752919 B = 5207.952578 C = 6491.998330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.259 6.259 3 C -0.065 4.065 4 H 0.091 0.909 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.141 4.141 8 C 0.127 3.873 9 N -0.995 5.995 10 S 2.778 3.222 11 O -0.993 6.993 12 O -0.978 6.978 13 N -0.989 5.989 14 C 0.107 3.893 15 C 0.268 3.732 16 H 0.058 0.942 17 C -0.144 4.144 18 C -0.526 4.526 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.896 3.104 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.146 3.854 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.011 0.989 43 H 0.093 0.907 44 H 0.264 0.736 45 H 0.107 0.893 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 3.923 -8.868 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.033 6.033 3 C -0.194 4.194 4 H 0.109 0.891 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.181 4.181 8 C -0.001 4.001 9 N -0.832 5.832 10 S 2.788 3.212 11 O -0.977 6.977 12 O -0.962 6.962 13 N -0.832 5.832 14 C -0.039 4.039 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.204 4.204 18 C -0.566 4.566 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C 0.021 3.979 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.280 3.294 -8.059 15.053 hybrid contribution 0.016 0.293 -0.935 0.980 sum -12.263 3.587 -8.994 15.626 Atomic orbital electron populations 1.23417 0.94659 1.06163 1.04774 1.87100 1.06772 1.11433 1.97957 1.22763 1.01319 0.93525 1.01836 0.89108 1.21422 1.01140 0.95723 0.96825 1.21528 0.98252 0.94594 1.01334 1.22746 0.94693 0.99045 1.01575 1.20666 0.96392 0.95626 0.87404 1.58227 1.80995 1.16928 1.27030 1.02049 0.73409 0.72719 0.73054 1.93533 1.84201 1.33246 1.86738 1.93579 1.80563 1.71423 1.50625 1.57779 1.23318 1.32519 1.69550 1.21191 0.97431 0.89315 0.95987 1.18732 0.92700 0.81135 0.90948 0.92463 1.22056 0.99238 1.01240 0.97887 1.21313 1.28546 1.10988 0.95739 0.91982 1.24912 0.96486 0.96966 0.95336 1.69868 1.41641 1.24551 1.16324 0.86607 0.80395 0.79229 0.81433 1.20332 1.21242 1.20194 1.20433 0.91714 0.80055 1.05678 0.88248 0.90589 0.90549 0.89749 0.91223 0.92133 0.92105 0.90836 0.90924 0.90995 0.91454 0.93912 0.90155 0.93351 0.94881 0.96957 0.88872 0.92547 0.87447 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.37 101.05 1.05 -0.09 16 2 S -0.26 -3.46 21.62 -107.50 -2.32 -5.79 16 3 C -0.06 -0.87 2.18 -30.18 -0.07 -0.94 16 4 H 0.09 1.31 6.92 -51.85 -0.36 0.95 16 5 C -0.11 -1.20 5.13 -28.40 -0.15 -1.35 16 6 C -0.12 -1.28 5.65 -27.19 -0.15 -1.43 16 7 C -0.14 -1.58 6.41 -24.76 -0.16 -1.74 16 8 C 0.13 1.65 4.74 -4.66 -0.02 1.63 16 9 N -0.99 -15.95 2.94 -116.10 -0.34 -16.29 16 10 S 2.78 54.66 6.00 -107.50 -0.65 54.01 16 11 O -0.99 -19.99 16.34 -57.17 -0.93 -20.92 16 12 O -0.98 -22.22 15.51 -57.17 -0.89 -23.10 16 13 N -0.99 -20.48 3.12 -115.85 -0.36 -20.84 16 14 C 0.11 1.90 9.28 59.85 0.56 2.46 16 15 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 16 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 17 C -0.14 -3.45 8.97 37.16 0.33 -3.12 16 18 C -0.53 -13.28 7.99 -34.44 -0.28 -13.55 16 19 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 20 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 22 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.15 2.32 5.07 -5.19 -0.03 2.29 16 27 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 30 H 0.08 0.88 6.29 -51.93 -0.33 0.55 16 31 H 0.07 0.65 5.83 -51.93 -0.30 0.35 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.75 6.82 -51.93 -0.35 0.40 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.82 6.89 -51.93 -0.36 0.46 16 37 H 0.07 0.87 7.30 -51.93 -0.38 0.49 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.45 7.02 -51.93 -0.36 1.08 16 40 H 0.05 0.74 7.29 -51.93 -0.38 0.36 16 41 H 0.03 0.73 7.67 -51.92 -0.40 0.34 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.11 2.00 7.30 -51.93 -0.38 1.62 16 46 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -29.91 371.03 -10.99 -40.91 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.51 Total: 2.63 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.81 Total: -7.90 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.08 Total: -60.66 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.82 Total: -44.03 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 51.19 SS G_CDS: -2.97 Total: 48.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.91 -10.99 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369214708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.389 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds