Wall clock time and date at job start Sat Apr 11 2020 04:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81402 * 102.99685 * 2 1 4 4 H 1.08998 * 108.46057 * 57.29121 * 3 2 1 5 5 C 1.52527 * 108.52310 * 299.71837 * 3 2 1 6 6 C 1.50124 * 105.41707 * 149.35547 * 5 3 2 7 7 C 1.54842 * 110.81744 * 97.68019 * 6 5 3 8 8 C 1.54900 * 110.14198 * 321.13739 * 7 6 5 9 9 N 1.43430 * 116.08072 * 318.63663 * 8 7 6 10 10 S 1.65593 * 120.54030 * 271.59379 * 9 8 7 11 11 O 1.42104 * 106.40270 * 23.51296 * 10 9 8 12 12 O 1.42101 * 106.40586 * 156.43613 * 10 9 8 13 13 N 1.65598 * 107.21702 * 269.97574 * 10 9 8 14 14 C 1.46500 * 120.00169 * 89.99906 * 13 10 9 15 15 C 1.46503 * 120.00190 * 269.99550 * 13 10 9 16 16 H 1.08998 * 109.46961 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47582 * 240.00500 * 15 13 10 18 18 C 1.50701 * 109.47046 * 119.99840 * 15 13 10 19 19 H 1.08002 * 119.99752 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00057 * 180.02562 * 18 15 13 21 21 N 1.31520 * 119.99834 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00008 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47183 * 60.00132 * 22 20 18 24 24 H 1.48506 * 109.46943 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46994 * 300.00043 * 22 20 18 26 26 C 1.46246 * 108.51704 * 175.00307 * 3 2 1 27 27 H 1.09002 * 109.47211 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46936 * 300.00044 * 1 2 3 29 29 H 1.08996 * 109.47282 * 60.00084 * 1 2 3 30 30 H 1.09003 * 110.24761 * 268.32925 * 5 3 2 31 31 H 1.08998 * 110.24760 * 30.23290 * 5 3 2 32 32 H 1.08990 * 109.20914 * 218.02862 * 6 5 3 33 33 H 1.08999 * 109.20148 * 337.38781 * 6 5 3 34 34 H 1.09003 * 109.35911 * 81.34018 * 7 6 5 35 35 H 1.09001 * 109.36099 * 201.06410 * 7 6 5 36 36 H 1.09002 * 108.16150 * 80.35935 * 8 7 6 37 37 H 1.09005 * 108.16137 * 196.92219 * 8 7 6 38 38 H 1.09006 * 109.47186 * 89.99867 * 14 13 10 39 39 H 1.08999 * 109.47346 * 209.99851 * 14 13 10 40 40 H 1.09001 * 109.46795 * 329.99868 * 14 13 10 41 41 H 1.09011 * 109.46923 * 299.99974 * 17 15 13 42 42 H 1.09000 * 109.47269 * 59.99313 * 17 15 13 43 43 H 1.09002 * 109.47409 * 180.02562 * 17 15 13 44 44 H 0.96995 * 119.99647 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.84460 * 299.15112 * 26 3 2 46 46 H 1.08995 * 109.84790 * 60.13929 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7553 2.2295 0.8699 5 6 1.6324 2.4009 -1.2560 6 6 1.3105 3.8170 -0.8755 7 6 2.4387 4.7776 -1.3248 8 6 3.8216 4.1134 -1.1107 9 7 3.9858 3.3781 0.1098 10 16 4.5118 4.1365 1.4847 11 8 4.1925 5.5126 1.3311 12 8 4.0554 3.3499 2.5766 13 7 6.1649 4.0386 1.4966 14 6 6.9657 5.0931 0.8698 15 6 6.8265 2.8975 2.1342 16 1 6.0741 2.2223 2.5415 17 6 7.7291 3.3972 3.2640 18 6 7.6584 2.1647 1.1134 19 1 7.6913 2.5142 0.0920 20 6 8.3775 1.0480 1.4834 21 7 8.3371 0.6221 2.7271 22 14 9.4093 0.1400 0.2183 23 1 10.4349 1.0597 -0.3362 24 1 10.0789 -1.0174 0.8642 25 1 8.5337 -0.3444 -0.8790 26 6 3.6726 1.9094 0.1208 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 2.3626 2.3844 -2.0652 31 1 0.7269 1.8731 -1.5552 32 1 0.3763 4.1130 -1.3525 33 1 1.1963 3.8803 0.2067 34 1 2.3117 5.0153 -2.3810 35 1 2.3864 5.6955 -0.7391 36 1 4.0050 3.4345 -1.9436 37 1 4.5819 4.8938 -1.1421 38 1 7.1881 5.8662 1.6053 39 1 7.8973 4.6683 0.4961 40 1 6.4074 5.5294 0.0415 41 1 8.4816 4.0723 2.8563 42 1 7.1273 3.9273 4.0023 43 1 8.2217 2.5483 3.7380 44 1 8.8427 -0.1637 2.9872 45 1 4.0110 1.4659 1.0571 46 1 4.1636 1.4200 -0.7202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369214708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:29 Heat of formation + Delta-G solvation = -90.981720 kcal Electronic energy + Delta-G solvation = -27563.966437 eV Core-core repulsion = 23934.045600 eV Total energy + Delta-G solvation = -3629.920837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98678 -38.44101 -37.89794 -36.92401 -34.64745 -34.50022 -33.63382 -30.94260 -29.82672 -27.48351 -27.23470 -26.99294 -26.13021 -22.98957 -22.53865 -21.27509 -19.71336 -18.73756 -18.54626 -18.23507 -17.68209 -17.33871 -16.71846 -16.10106 -16.02971 -15.56516 -15.33424 -15.19453 -14.79267 -14.55227 -14.53034 -14.40611 -13.93322 -13.75715 -13.51529 -13.48907 -13.44904 -13.24309 -13.19310 -13.08116 -12.98965 -12.75198 -12.68087 -12.38793 -12.25482 -12.16194 -12.12708 -12.12138 -11.90475 -11.50510 -11.35329 -11.16790 -10.69297 -10.48258 -10.11609 -9.65845 -8.71078 -8.07875 -6.22884 -0.41965 0.65389 1.47536 1.48158 1.55364 1.62656 1.97743 2.45919 2.52388 3.20757 3.31735 3.44725 3.70009 3.77797 3.99356 4.05961 4.15298 4.23882 4.26781 4.34024 4.39827 4.57398 4.64708 4.70281 4.72002 4.77514 4.83760 4.86651 4.90774 4.94204 4.97496 5.03454 5.13521 5.17050 5.21201 5.24092 5.29459 5.40454 5.58000 5.62073 5.77045 5.86798 6.10394 6.28716 6.85874 7.46893 8.96724 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011344 B = 0.005375 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.752919 B = 5207.952578 C = 6491.998330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.315 6.315 3 C -0.055 4.055 4 H 0.074 0.926 5 C -0.102 4.102 6 C -0.118 4.118 7 C -0.138 4.138 8 C 0.111 3.889 9 N -0.988 5.988 10 S 2.788 3.212 11 O -0.998 6.998 12 O -1.016 7.016 13 N -0.997 5.997 14 C 0.100 3.900 15 C 0.274 3.726 16 H 0.021 0.979 17 C -0.139 4.139 18 C -0.527 4.527 19 H 0.070 0.930 20 C 0.018 3.982 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.268 1.268 24 H -0.290 1.290 25 H -0.271 1.271 26 C 0.150 3.850 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.070 0.930 44 H 0.263 0.737 45 H 0.069 0.931 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 4.573 -11.927 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.089 6.089 3 C -0.185 4.185 4 H 0.092 0.908 5 C -0.141 4.141 6 C -0.157 4.157 7 C -0.177 4.177 8 C -0.015 4.015 9 N -0.828 5.828 10 S 2.799 3.201 11 O -0.982 6.982 12 O -1.001 7.001 13 N -0.839 5.839 14 C -0.045 4.045 15 C 0.170 3.830 16 H 0.039 0.961 17 C -0.198 4.198 18 C -0.566 4.566 19 H 0.088 0.912 20 C -0.182 4.182 21 N -0.557 5.557 22 Si 0.783 3.217 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.196 1.196 26 C 0.025 3.975 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.322 3.981 -11.129 17.810 hybrid contribution 0.261 0.112 0.019 0.284 sum -13.062 4.093 -11.110 17.629 Atomic orbital electron populations 1.23488 0.90445 1.07526 1.05938 1.87276 1.11493 1.12032 1.98113 1.22651 0.99451 0.93386 1.02972 0.90807 1.21419 1.01965 0.95396 0.95272 1.21534 0.99411 0.94567 1.00213 1.22761 0.93449 0.98101 1.03384 1.21054 0.97985 0.96099 0.86369 1.57909 1.80597 1.17096 1.27167 1.01537 0.73056 0.72353 0.73186 1.93516 1.84122 1.33527 1.86990 1.93525 1.81112 1.72242 1.53185 1.57699 1.23879 1.32248 1.70063 1.21400 0.97472 0.88684 0.96963 1.18381 0.91714 0.81809 0.91119 0.96097 1.21947 0.99407 1.00536 0.97951 1.21544 1.28029 1.10939 0.96112 0.91210 1.25675 0.97724 0.97886 0.96912 1.70013 1.42620 1.24987 1.18119 0.85632 0.78988 0.77953 0.79175 1.19343 1.21626 1.19586 1.20374 0.93624 0.79575 1.03976 0.86760 0.90347 0.88395 0.88810 0.89234 0.89454 0.94339 0.87495 0.92464 0.88643 0.91220 0.93154 0.90370 0.90616 0.93660 0.96522 0.91131 0.92769 0.91269 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.37 113.37 1.18 -0.58 16 2 S -0.32 -8.30 21.62 -56.49 -1.22 -9.52 16 3 C -0.05 -1.46 2.18 28.36 0.06 -1.39 16 4 H 0.07 2.19 6.92 -2.44 -0.02 2.17 16 5 C -0.10 -1.91 5.13 29.51 0.15 -1.75 16 6 C -0.12 -2.24 5.65 30.30 0.17 -2.07 16 7 C -0.14 -2.68 6.41 31.87 0.20 -2.47 16 8 C 0.11 2.64 4.74 87.60 0.42 3.06 16 9 N -0.99 -31.33 2.94 -521.22 -1.53 -32.86 16 10 S 2.79 111.38 6.00 -56.49 -0.34 111.04 16 11 O -1.00 -39.73 16.34 -128.00 -2.09 -41.82 16 12 O -1.02 -48.54 15.51 -128.00 -1.99 -50.53 16 13 N -1.00 -41.54 3.12 -520.44 -1.62 -43.17 16 14 C 0.10 3.44 9.28 127.77 1.19 4.63 16 15 C 0.27 13.64 2.62 44.24 0.12 13.75 16 16 H 0.02 1.20 6.91 -2.39 -0.02 1.19 16 17 C -0.14 -6.79 8.97 71.98 0.65 -6.14 16 18 C -0.53 -26.74 7.99 25.60 0.20 -26.54 16 19 H 0.07 3.36 7.33 -2.91 -0.02 3.34 16 20 C 0.02 0.93 5.30 84.65 0.45 1.38 16 21 N -0.92 -51.45 11.32 21.45 0.24 -51.21 16 22 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.15 4.82 5.07 83.58 0.42 5.24 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.22 6.52 -2.39 -0.02 1.20 16 30 H 0.09 1.61 6.29 -2.39 -0.01 1.60 16 31 H 0.09 1.34 5.83 -2.39 -0.01 1.33 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 0.91 6.82 -2.39 -0.02 0.89 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.85 6.89 -2.39 -0.02 1.83 16 37 H 0.07 1.63 7.30 -2.38 -0.02 1.61 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.08 2.71 7.02 -2.39 -0.02 2.69 16 40 H 0.08 2.15 7.29 -2.39 -0.02 2.13 16 41 H 0.04 2.03 7.67 -2.38 -0.02 2.02 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 44 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.07 2.76 7.30 -2.39 -0.02 2.74 16 46 H 0.10 2.85 8.12 -2.39 -0.02 2.83 16 Total: -1.00 -66.46 371.03 -0.36 -66.82 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.96 Total: 20.64 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 5.21 Total: -12.88 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -2.91 Total: -127.23 kcal Atomic # 8 Polarization: -88.27 SS G_CDS: -4.08 Total: -92.35 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 103.08 SS G_CDS: -1.56 Total: 101.52 kcal Total: -66.46 -0.36 -66.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369214708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.160 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds