Wall clock time and date at job start Sat Apr 11 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00216 * 2 1 4 4 C 1.38997 * 120.08211 * 359.97438 * 3 2 1 5 5 C 1.38058 * 119.92065 * 180.02562 * 4 3 2 6 6 C 1.38318 * 120.08243 * 0.02562 * 5 4 3 7 7 C 1.38281 * 120.15986 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.08146 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.04092 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46642 * 212.76317 * 9 8 7 11 11 C 1.53003 * 109.46806 * 92.76443 * 9 8 7 12 12 N 1.46502 * 109.46942 * 332.76465 * 9 8 7 13 13 C 1.34775 * 119.99689 * 207.19247 * 12 9 8 14 14 O 1.21353 * 119.99962 * 359.97438 * 13 12 9 15 15 C 1.49446 * 119.99816 * 180.02562 * 13 12 9 16 16 O 1.21343 * 120.00172 * 359.97438 * 15 13 12 17 17 N 1.34783 * 119.99971 * 179.97438 * 15 13 12 18 18 C 1.46496 * 120.00161 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47068 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46900 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00468 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99995 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47085 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47255 * 119.99670 * 24 22 20 27 27 H 1.48502 * 109.46913 * 240.00027 * 24 22 20 28 28 H 1.09005 * 109.47162 * 300.00215 * 1 2 3 29 29 H 1.09003 * 109.47105 * 59.99597 * 1 2 3 30 30 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03662 * 0.05071 * 4 3 2 32 32 H 1.07998 * 119.95672 * 179.72503 * 5 4 3 33 33 H 1.08001 * 119.92527 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.95956 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47282 * 299.99934 * 11 9 8 36 36 H 1.09003 * 109.47103 * 60.00244 * 11 9 8 37 37 H 1.09002 * 109.46565 * 180.02562 * 11 9 8 38 38 H 0.96993 * 120.00030 * 27.19014 * 12 9 8 39 39 H 0.97002 * 119.99561 * 0.02562 * 17 15 13 40 40 H 1.09002 * 109.47155 * 300.00388 * 18 17 15 41 41 H 1.08999 * 109.47030 * 60.00068 * 18 17 15 42 42 H 1.08996 * 109.47188 * 299.99786 * 19 18 17 43 43 H 1.08999 * 109.47200 * 60.00098 * 19 18 17 44 44 H 0.97001 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 -0.0005 5 6 1.5097 4.0105 -0.0011 6 6 2.8330 4.4130 -0.0016 7 6 3.8456 3.4714 -0.0011 8 6 3.5387 2.1248 -0.0005 9 6 4.6430 1.0993 0.0006 10 1 4.3214 0.2186 -0.5552 11 6 4.9685 0.7021 1.4419 12 7 5.8369 1.6667 -0.6311 13 6 6.7279 0.8570 -1.2368 14 8 6.5416 -0.3419 -1.2585 15 6 7.9461 1.4356 -1.8808 16 8 8.1327 2.6344 -1.8587 17 7 8.8375 0.6259 -2.4861 18 6 10.0314 1.1932 -3.1178 19 6 10.8695 0.0675 -3.7272 20 6 12.0980 0.6510 -4.3765 21 1 12.2640 1.7179 -4.3569 22 6 13.0094 -0.1773 -4.9965 23 7 12.8064 -1.4764 -5.0217 24 14 14.5324 0.5459 -5.8008 25 1 14.5261 2.0217 -5.6354 26 1 15.7466 -0.0193 -5.1593 27 1 14.5349 0.2103 -7.2474 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.1618 2.3526 -0.0001 32 1 0.7214 4.7487 -0.0060 33 1 3.0760 5.4653 -0.0024 34 1 4.8778 3.7893 -0.0011 35 1 5.2900 1.5829 1.9977 36 1 4.0802 0.2800 1.9119 37 1 5.7676 -0.0393 1.4427 38 1 5.9860 2.6249 -0.6135 39 1 8.6881 -0.3324 -2.5040 40 1 9.7319 1.8882 -3.9022 41 1 10.6217 1.7221 -2.3697 42 1 11.1690 -0.6278 -2.9431 43 1 10.2789 -0.4611 -4.4754 44 1 13.4478 -2.0591 -5.4576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117514607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:02 Heat of formation + Delta-G solvation = -53.741751 kcal Electronic energy + Delta-G solvation = -25470.111152 eV Core-core repulsion = 21706.361210 eV Total energy + Delta-G solvation = -3763.749942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70472 -39.65664 -38.25412 -36.02862 -34.98070 -32.87547 -32.08390 -31.67577 -29.83424 -29.56669 -29.23325 -25.88121 -24.52576 -23.54671 -23.11206 -21.22546 -20.83710 -20.18838 -18.75633 -17.68292 -17.01138 -16.55756 -16.22755 -15.76805 -15.68770 -15.20634 -14.85603 -14.71583 -14.57134 -14.49252 -14.41216 -14.23563 -13.84398 -13.55448 -13.39067 -13.02506 -12.93305 -12.69126 -12.48963 -12.32115 -12.08353 -11.57284 -11.53281 -11.44474 -11.21523 -11.06948 -10.64348 -10.47448 -10.39658 -10.14781 -9.78647 -9.50490 -9.42264 -9.22728 -9.16097 -8.68505 -8.41175 -7.80322 -6.09407 -4.12907 0.76811 0.87733 1.09558 1.62866 1.98037 2.51575 3.23999 3.28582 3.36168 3.40732 3.44551 3.87410 4.14115 4.36584 4.41019 4.58074 4.58826 4.61443 4.75850 4.88780 4.90144 5.00960 5.06796 5.19170 5.27349 5.27529 5.42080 5.52350 5.60992 5.78592 5.91467 5.96892 6.05430 6.19178 6.23966 6.25100 6.43679 6.60836 6.70563 7.05213 7.47978 7.59131 7.67581 7.88210 7.93855 8.22211 8.35192 8.92968 9.51937 11.02110 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.001967 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.797030 B =14228.797454 C =14908.672124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.101 6.101 3 C -0.078 4.078 4 C -0.130 4.130 5 C -0.101 4.101 6 C -0.117 4.117 7 C -0.097 4.097 8 C -0.073 4.073 9 C 0.180 3.820 10 H 0.108 0.892 11 C -0.158 4.158 12 N -0.702 5.702 13 C 0.510 3.490 14 O -0.516 6.516 15 C 0.498 3.502 16 O -0.534 6.534 17 N -0.685 5.685 18 C 0.119 3.881 19 C 0.010 3.990 20 C -0.522 4.522 21 H 0.061 0.939 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.888 7.453 13.969 32.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.143 5.857 3 C -0.191 4.191 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.079 4.079 9 C 0.075 3.925 10 H 0.126 0.874 11 C -0.217 4.217 12 N -0.358 5.358 13 C 0.291 3.709 14 O -0.390 6.390 15 C 0.277 3.723 16 O -0.412 6.412 17 N -0.336 5.336 18 C -0.003 4.003 19 C -0.027 4.027 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.144 4.144 23 N -0.530 5.530 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.149 6.172 13.882 31.110 hybrid contribution -0.068 1.460 -0.508 1.548 sum -27.217 7.632 13.373 31.271 Atomic orbital electron populations 1.23748 0.95414 1.07273 1.05590 1.85807 1.05813 1.02194 1.91925 1.21543 0.95527 0.97133 1.04885 1.21134 0.98045 0.93180 1.03047 1.21077 0.96743 0.95257 0.98986 1.21184 0.92580 0.99807 1.00151 1.20921 0.99854 0.91758 0.99108 1.19510 0.92075 0.94518 1.01802 1.19863 0.82239 0.95090 0.95282 0.87411 1.22161 1.02992 1.02291 0.94218 1.45923 1.22154 1.11669 1.56042 1.20474 0.84502 0.86847 0.79071 1.90763 1.75850 1.14481 1.57915 1.19939 0.84331 0.87099 0.80881 1.90721 1.76550 1.14463 1.59469 1.46231 1.22599 1.11575 1.53190 1.21937 0.83291 0.98841 0.96222 1.19364 0.94289 0.92804 0.96260 1.21052 1.05544 0.93798 1.35702 0.92109 1.25012 0.98402 0.94831 0.96117 1.69970 1.36375 1.02878 1.43810 0.86442 0.82616 0.79376 0.79028 1.19585 1.20930 1.20937 0.89725 0.89730 0.87244 0.85654 0.85562 0.85340 0.85308 0.91997 0.90678 0.91103 0.75111 0.75345 0.91862 0.91840 0.95635 0.95637 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.15 101.05 0.92 0.19 16 2 S -0.10 -0.86 20.73 -107.50 -2.23 -3.09 16 3 C -0.08 -0.71 6.11 -39.04 -0.24 -0.95 16 4 C -0.13 -0.98 9.36 -39.37 -0.37 -1.35 16 5 C -0.10 -0.69 10.04 -39.62 -0.40 -1.09 16 6 C -0.12 -0.86 10.04 -39.54 -0.40 -1.26 16 7 C -0.10 -0.84 9.22 -39.61 -0.37 -1.20 16 8 C -0.07 -0.72 5.06 -104.40 -0.53 -1.24 16 9 C 0.18 2.00 2.33 -69.08 -0.16 1.84 16 10 H 0.11 1.38 6.28 -51.93 -0.33 1.05 16 11 C -0.16 -1.57 9.49 37.16 0.35 -1.22 16 12 N -0.70 -8.68 4.97 -55.36 -0.28 -8.96 16 13 C 0.51 7.87 7.88 -11.59 -0.09 7.78 16 14 O -0.52 -8.87 16.10 5.49 0.09 -8.78 16 15 C 0.50 8.70 7.89 -11.58 -0.09 8.61 16 16 O -0.53 -10.12 16.48 5.50 0.09 -10.03 16 17 N -0.69 -12.63 5.55 -60.73 -0.34 -12.96 16 18 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 19 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 20 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 21 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.08 0.33 7.75 -51.92 -0.40 -0.08 16 29 H 0.08 0.36 7.75 -51.92 -0.40 -0.04 16 30 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.13 0.68 5.88 -52.49 -0.31 0.37 16 32 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.99 6.17 -52.48 -0.32 0.67 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.41 4.56 5.78 -40.82 -0.24 4.33 16 39 H 0.41 7.23 7.94 -40.82 -0.32 6.91 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -32.12 384.56 -9.18 -41.29 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.09 Total: 6.37 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.94 Total: -0.49 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.12 Total: -47.37 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.18 Total: -18.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.23 Total: -3.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.12 -9.18 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117514607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.450 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds