Wall clock time and date at job start Sat Apr 11 2020 04:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00216 * 2 1 4 4 C 1.38997 * 120.08211 * 359.97438 * 3 2 1 5 5 C 1.38058 * 119.92065 * 180.02562 * 4 3 2 6 6 C 1.38318 * 120.08243 * 0.02562 * 5 4 3 7 7 C 1.38281 * 120.15986 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.08146 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.04092 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46642 * 212.76317 * 9 8 7 11 11 C 1.53003 * 109.46806 * 92.76443 * 9 8 7 12 12 N 1.46502 * 109.46942 * 332.76465 * 9 8 7 13 13 C 1.34775 * 119.99689 * 207.19247 * 12 9 8 14 14 O 1.21353 * 119.99962 * 359.97438 * 13 12 9 15 15 C 1.49446 * 119.99816 * 180.02562 * 13 12 9 16 16 O 1.21343 * 120.00172 * 359.97438 * 15 13 12 17 17 N 1.34783 * 119.99971 * 179.97438 * 15 13 12 18 18 C 1.46496 * 120.00161 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47068 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.46900 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00468 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99799 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99995 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47085 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47255 * 119.99670 * 24 22 20 27 27 H 1.48502 * 109.46913 * 240.00027 * 24 22 20 28 28 H 1.09005 * 109.47162 * 300.00215 * 1 2 3 29 29 H 1.09003 * 109.47105 * 59.99597 * 1 2 3 30 30 H 1.08996 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.03662 * 0.05071 * 4 3 2 32 32 H 1.07998 * 119.95672 * 179.72503 * 5 4 3 33 33 H 1.08001 * 119.92527 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.95956 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47282 * 299.99934 * 11 9 8 36 36 H 1.09003 * 109.47103 * 60.00244 * 11 9 8 37 37 H 1.09002 * 109.46565 * 180.02562 * 11 9 8 38 38 H 0.96993 * 120.00030 * 27.19014 * 12 9 8 39 39 H 0.97002 * 119.99561 * 0.02562 * 17 15 13 40 40 H 1.09002 * 109.47155 * 300.00388 * 18 17 15 41 41 H 1.08999 * 109.47030 * 60.00068 * 18 17 15 42 42 H 1.08996 * 109.47188 * 299.99786 * 19 18 17 43 43 H 1.08999 * 109.47200 * 60.00098 * 19 18 17 44 44 H 0.97001 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1953 2.6662 -0.0005 5 6 1.5097 4.0105 -0.0011 6 6 2.8330 4.4130 -0.0016 7 6 3.8456 3.4714 -0.0011 8 6 3.5387 2.1248 -0.0005 9 6 4.6430 1.0993 0.0006 10 1 4.3214 0.2186 -0.5552 11 6 4.9685 0.7021 1.4419 12 7 5.8369 1.6667 -0.6311 13 6 6.7279 0.8570 -1.2368 14 8 6.5416 -0.3419 -1.2585 15 6 7.9461 1.4356 -1.8808 16 8 8.1327 2.6344 -1.8587 17 7 8.8375 0.6259 -2.4861 18 6 10.0314 1.1932 -3.1178 19 6 10.8695 0.0675 -3.7272 20 6 12.0980 0.6510 -4.3765 21 1 12.2640 1.7179 -4.3569 22 6 13.0094 -0.1773 -4.9965 23 7 12.8064 -1.4764 -5.0217 24 14 14.5324 0.5459 -5.8008 25 1 14.5261 2.0217 -5.6354 26 1 15.7466 -0.0193 -5.1593 27 1 14.5349 0.2103 -7.2474 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.1618 2.3526 -0.0001 32 1 0.7214 4.7487 -0.0060 33 1 3.0760 5.4653 -0.0024 34 1 4.8778 3.7893 -0.0011 35 1 5.2900 1.5829 1.9977 36 1 4.0802 0.2800 1.9119 37 1 5.7676 -0.0393 1.4427 38 1 5.9860 2.6249 -0.6135 39 1 8.6881 -0.3324 -2.5040 40 1 9.7319 1.8882 -3.9022 41 1 10.6217 1.7221 -2.3697 42 1 11.1690 -0.6278 -2.9431 43 1 10.2789 -0.4611 -4.4754 44 1 13.4478 -2.0591 -5.4576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117514607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:01 Heat of formation + Delta-G solvation = -74.206995 kcal Electronic energy + Delta-G solvation = -25470.998592 eV Core-core repulsion = 21706.361210 eV Total energy + Delta-G solvation = -3764.637382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90248 -40.54256 -39.52271 -37.15962 -36.53798 -34.84987 -32.98001 -32.27332 -31.69867 -30.32032 -29.66480 -27.53128 -25.85911 -24.47777 -23.94580 -22.86652 -21.91453 -21.36642 -19.96243 -18.61048 -18.44387 -17.99798 -17.32032 -17.09554 -16.69966 -16.49953 -16.11710 -15.91934 -15.85072 -15.39634 -15.11188 -14.98184 -14.89041 -14.61438 -14.46351 -14.31722 -14.08640 -13.55282 -13.37568 -13.26037 -13.20935 -12.96530 -12.86330 -12.74743 -12.51089 -12.30010 -12.27118 -12.12980 -11.69029 -11.41978 -11.05614 -10.75317 -10.74676 -10.62545 -10.50853 -10.21763 -9.86982 -8.43270 -8.23574 -6.34704 0.15905 0.27294 0.28965 0.54669 1.25168 1.42529 1.43545 1.47458 1.56695 2.07788 2.39225 2.59547 2.68061 3.11388 3.36473 3.42058 3.78607 4.01962 4.14040 4.18414 4.26499 4.27549 4.38157 4.39303 4.44918 4.46085 4.58907 4.70745 4.77156 4.80875 4.86110 4.90192 5.05099 5.06237 5.14329 5.25307 5.40064 5.43216 5.50589 5.54633 5.75072 5.85787 5.91219 6.12606 6.31158 6.65491 6.79271 6.88624 7.34795 8.88695 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.001967 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.797030 B =14228.797454 C =14908.672124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.153 6.153 3 C -0.086 4.086 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.120 4.120 7 C -0.108 4.108 8 C -0.091 4.091 9 C 0.182 3.818 10 H 0.090 0.910 11 C -0.152 4.152 12 N -0.684 5.684 13 C 0.516 3.484 14 O -0.537 6.537 15 C 0.502 3.498 16 O -0.546 6.546 17 N -0.687 5.687 18 C 0.138 3.862 19 C 0.018 3.982 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.278 1.278 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.418 0.582 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.008 0.992 43 H 0.007 0.993 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.366 9.422 14.393 34.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.089 5.911 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.118 4.118 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.097 4.097 9 C 0.078 3.922 10 H 0.107 0.893 11 C -0.210 4.210 12 N -0.340 5.340 13 C 0.296 3.704 14 O -0.413 6.413 15 C 0.283 3.717 16 O -0.425 6.425 17 N -0.338 5.338 18 C 0.015 3.985 19 C -0.020 4.020 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.204 1.204 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.258 0.742 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.662 8.171 14.330 33.070 hybrid contribution 0.251 0.877 -0.600 1.092 sum -28.411 9.048 13.730 32.826 Atomic orbital electron populations 1.23814 0.91745 1.08426 1.06672 1.85973 1.09947 1.03042 1.92099 1.21631 0.95670 0.97262 1.05301 1.21455 0.98702 0.93264 1.02305 1.21460 0.97323 0.95581 0.97470 1.21494 0.92570 1.00651 0.99318 1.21073 1.00653 0.91585 0.99502 1.19433 0.91939 0.94577 1.03798 1.19891 0.81943 0.95062 0.95305 0.89253 1.22100 1.02870 1.02299 0.93746 1.45906 1.21716 1.11782 1.54564 1.20030 0.84270 0.86659 0.79406 1.90763 1.76232 1.15241 1.59090 1.20222 0.84555 0.86738 0.80221 1.90708 1.76951 1.14998 1.59841 1.46070 1.22286 1.11911 1.53564 1.21498 0.83741 0.97153 0.96089 1.19186 0.94121 0.93428 0.95233 1.21477 1.06537 0.94228 1.35897 0.91636 1.25942 1.01744 0.95180 0.96701 1.70087 1.37702 1.04258 1.44742 0.85337 0.78433 0.78968 0.77934 1.18549 1.20383 1.20412 0.88318 0.88859 0.86073 0.83595 0.82797 0.83227 0.84899 0.90936 0.89778 0.92610 0.74247 0.74917 0.91953 0.91851 0.97386 0.97446 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.15 113.37 1.04 -0.05 16 2 S -0.15 -2.58 20.73 -56.49 -1.17 -3.75 16 3 C -0.09 -1.48 6.11 22.62 0.14 -1.35 16 4 C -0.13 -1.71 9.36 22.41 0.21 -1.50 16 5 C -0.10 -1.07 10.04 22.25 0.22 -0.85 16 6 C -0.12 -1.48 10.04 22.30 0.22 -1.26 16 7 C -0.11 -1.74 9.22 22.25 0.21 -1.54 16 8 C -0.09 -1.74 5.06 -19.72 -0.10 -1.84 16 9 C 0.18 4.07 2.33 44.25 0.10 4.17 16 10 H 0.09 2.38 6.28 -2.39 -0.01 2.36 16 11 C -0.15 -3.03 9.49 71.98 0.68 -2.34 16 12 N -0.68 -16.87 4.97 -447.42 -2.22 -19.09 16 13 C 0.52 16.06 7.88 87.27 0.69 16.75 16 14 O -0.54 -18.88 16.10 -3.26 -0.05 -18.93 16 15 C 0.50 17.55 7.89 87.27 0.69 18.24 16 16 O -0.55 -20.45 16.48 -3.23 -0.05 -20.50 16 17 N -0.69 -25.66 5.55 -464.42 -2.58 -28.24 16 18 C 0.14 5.84 5.61 86.38 0.48 6.33 16 19 C 0.02 0.91 5.09 29.85 0.15 1.06 16 20 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 21 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 22 C 0.00 0.16 5.46 84.66 0.46 0.63 16 23 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 24 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.10 0.51 7.75 -2.39 -0.02 0.49 16 29 H 0.09 0.59 7.75 -2.39 -0.02 0.57 16 30 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.15 1.16 5.88 -2.91 -0.02 1.14 16 32 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.13 1.90 6.17 -2.91 -0.02 1.88 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 9.06 5.78 -92.71 -0.54 8.52 16 39 H 0.41 15.00 7.94 -92.71 -0.74 14.26 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -68.97 384.56 1.43 -67.54 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.23 Total: 25.71 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.43 Total: 6.54 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -4.52 Total: -102.26 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.11 Total: -39.43 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -1.17 Total: -3.75 kcal Total: -68.97 1.43 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117514607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.671 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds