Wall clock time and date at job start Sat Apr 11 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47227 * 2 1 4 4 C 1.46499 * 119.99877 * 270.00201 * 3 2 1 5 5 C 1.53002 * 109.47122 * 269.99654 * 4 3 2 6 6 C 1.34779 * 120.00095 * 89.99519 * 3 2 1 7 7 O 1.21284 * 119.99578 * 0.02562 * 6 3 2 8 8 C 1.50697 * 119.99948 * 180.02562 * 6 3 2 9 9 N 1.46492 * 109.47008 * 180.02562 * 8 6 3 10 10 C 1.34784 * 120.00217 * 180.02562 * 9 8 6 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.47865 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.09843 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.03832 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67600 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.08999 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47170 * 300.00174 * 1 2 3 29 29 H 1.08999 * 109.47327 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47170 * 239.99826 * 2 1 3 31 31 H 1.09007 * 109.47087 * 119.99632 * 2 1 3 32 32 H 1.09003 * 109.47170 * 29.99473 * 4 3 2 33 33 H 1.08995 * 109.47269 * 149.99690 * 4 3 2 34 34 H 1.09003 * 109.46794 * 60.00004 * 5 4 3 35 35 H 1.08993 * 109.47158 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47014 * 300.00361 * 5 4 3 37 37 H 1.09005 * 109.46791 * 60.00292 * 8 6 3 38 38 H 1.09002 * 109.47038 * 300.00217 * 8 6 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 9 8 6 40 40 H 1.08002 * 119.98607 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.89897 * 180.29644 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0411 1.4447 2.2175 8 6 2.7447 3.4376 1.1672 9 7 2.9081 3.8978 2.5483 10 6 3.3490 5.1474 2.7946 11 8 3.6115 5.8924 1.8707 12 6 3.5134 5.6121 4.1887 13 6 3.2118 4.7580 5.2519 14 6 3.3652 5.1933 6.5529 15 6 3.8233 6.4714 6.8096 16 6 4.1213 7.3328 5.7578 17 16 4.6975 8.9643 6.0907 18 6 3.1749 9.8478 6.0157 19 1 2.2456 9.3125 5.8889 20 6 3.1698 11.2313 6.1198 21 7 4.3023 11.8837 6.2751 22 14 1.5554 12.1678 6.0410 23 1 0.9989 12.3110 7.4103 24 1 1.7919 13.5136 5.4596 25 1 0.5923 11.4235 5.1905 26 6 3.9696 6.9038 4.4457 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.8745 0.7622 -1.8407 35 1 3.8890 2.3448 -2.6546 36 1 4.3883 2.2155 -0.9508 37 1 2.0264 4.0765 0.6535 38 1 3.7048 3.4838 0.6532 39 1 2.6983 3.3035 3.2856 40 1 2.8585 3.7564 5.0561 41 1 3.1309 4.5309 7.3730 42 1 3.9459 6.8047 7.8296 43 1 4.2988 12.8510 6.3475 44 1 4.2040 7.5686 3.6275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079536708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:05 Heat of formation + Delta-G solvation = -51.052982 kcal Electronic energy + Delta-G solvation = -25522.907859 eV Core-core repulsion = 21759.274510 eV Total energy + Delta-G solvation = -3763.633349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73964 -39.67184 -37.79051 -36.74559 -34.66792 -32.69976 -32.49029 -31.11688 -30.51587 -30.09698 -27.82492 -25.55093 -24.13479 -23.92115 -22.92863 -22.11163 -20.47048 -19.62250 -18.46877 -17.54070 -17.30987 -16.82748 -16.23346 -15.90127 -15.51273 -15.10275 -14.84008 -14.82201 -14.46256 -14.30700 -14.12881 -14.02649 -13.56810 -13.44812 -13.29259 -13.09292 -12.91203 -12.73325 -12.51601 -12.20238 -12.14912 -11.65698 -11.61398 -11.47111 -11.13665 -11.11303 -11.06679 -10.68665 -10.30214 -9.99404 -9.81968 -9.32173 -9.22250 -9.14793 -8.98994 -8.56411 -8.00049 -6.69279 -6.26868 -4.00559 1.17997 1.70256 2.11530 2.32304 3.02747 3.12890 3.21721 3.24515 3.29687 3.49383 3.94425 4.10815 4.28321 4.35843 4.58971 4.60424 4.80701 4.82240 4.84796 4.95967 5.05661 5.07139 5.09461 5.13934 5.18381 5.28146 5.29878 5.34598 5.46849 5.49632 5.67618 5.74686 5.76496 5.90211 6.00175 6.03050 6.18578 6.29072 6.61399 6.68158 6.81532 6.95622 7.21926 7.46252 7.59464 7.63279 8.23231 8.34669 9.18991 10.79837 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002228 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.934084 B =12565.749617 C =12972.281331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.610 5.610 4 C 0.098 3.902 5 C -0.174 4.174 6 C 0.512 3.488 7 O -0.534 6.534 8 C 0.102 3.898 9 N -0.722 5.722 10 C 0.568 3.432 11 O -0.535 6.535 12 C -0.155 4.155 13 C -0.087 4.087 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.108 4.108 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.017 4.017 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.411 0.589 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.269 0.731 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -24.020 -13.714 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.344 5.344 4 C -0.025 4.025 5 C -0.232 4.232 6 C 0.300 3.700 7 O -0.410 6.410 8 C -0.025 4.025 9 N -0.380 5.380 10 C 0.357 3.643 11 O -0.413 6.413 12 C -0.160 4.160 13 C -0.106 4.106 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.219 4.219 17 S 0.200 5.800 18 C -0.666 4.666 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.039 4.039 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.249 0.751 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.079 0.921 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.559 -23.177 -13.595 27.105 hybrid contribution -2.364 -0.248 -0.156 2.383 sum -5.923 -23.425 -13.751 27.801 Atomic orbital electron populations 1.22134 0.95646 1.02397 1.02491 1.21455 0.94540 0.81810 1.03327 1.47987 1.65930 1.14579 1.05948 1.21708 0.97409 0.98133 0.85201 1.22231 0.96250 1.02545 1.02213 1.20612 0.77258 0.88461 0.83678 1.90698 1.51894 1.67564 1.30893 1.21097 1.03233 0.92036 0.86173 1.45647 1.69288 1.15367 1.07654 1.18399 0.76032 0.80548 0.89329 1.90770 1.50191 1.54566 1.45747 1.19765 1.08150 0.96500 0.91547 1.21208 0.98405 0.98342 0.92693 1.21069 1.02140 0.96652 0.96193 1.21969 0.93342 0.92598 0.99565 1.22840 1.01998 1.03035 0.94026 1.83595 1.14430 0.90551 1.91433 1.22841 0.92279 0.93575 1.57944 0.90616 1.25004 0.97686 0.96505 0.94417 1.69988 1.25513 1.08673 1.46395 0.86120 0.81917 0.78740 0.78539 1.20181 1.20667 1.19570 1.21936 0.91682 0.93089 0.97183 0.91448 0.92087 0.92516 0.90383 0.89693 0.89777 0.89688 0.92177 0.90914 0.92064 0.88333 0.88266 0.75050 0.86277 0.85780 0.85039 0.92079 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.11 0.68 6.13 -4.04 -0.02 0.65 16 3 N -0.61 -4.35 2.47 -173.68 -0.43 -4.78 16 4 C 0.10 0.46 5.93 -4.04 -0.02 0.43 16 5 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 6 C 0.51 5.13 7.74 -10.99 -0.09 5.05 16 7 O -0.53 -6.93 15.25 5.55 0.08 -6.84 16 8 C 0.10 1.05 4.71 -5.20 -0.02 1.03 16 9 N -0.72 -9.38 5.48 -62.43 -0.34 -9.73 16 10 C 0.57 9.40 7.77 -12.32 -0.10 9.31 16 11 O -0.54 -10.36 16.34 5.32 0.09 -10.28 16 12 C -0.15 -2.71 5.87 -105.00 -0.62 -3.32 16 13 C -0.09 -1.30 9.54 -39.12 -0.37 -1.67 16 14 C -0.14 -2.12 10.02 -39.67 -0.40 -2.52 16 15 C -0.05 -0.98 9.79 -39.25 -0.38 -1.37 16 16 C -0.11 -2.35 5.45 -39.00 -0.21 -2.56 16 17 S -0.03 -0.90 21.40 -107.50 -2.30 -3.20 16 18 C -0.52 -14.75 9.46 30.92 0.29 -14.46 16 19 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 20 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.08 0.65 7.42 -51.92 -0.39 0.26 16 32 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 33 H 0.08 0.38 6.44 -51.93 -0.33 0.05 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.35 7.22 -51.93 -0.38 -0.03 16 37 H 0.10 0.95 7.40 -51.93 -0.38 0.57 16 38 H 0.10 0.94 7.19 -51.93 -0.37 0.57 16 39 H 0.41 5.02 5.47 -40.82 -0.22 4.79 16 40 H 0.12 1.40 6.40 -52.49 -0.34 1.06 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -34.32 387.02 -9.16 -43.48 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.15 Total: 2.96 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.64 Total: -9.18 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.04 Total: -39.34 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.17 Total: -17.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.32 -9.16 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079536708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.573 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds